/** Calculate the frequency of every one of the keys of the X axis */
@Override
protected void processData(ExperimentSummaryData summaryData) {
Map<Integer, Integer> valuesIdentified = new HashMap<Integer, Integer>();
Map<Integer, Integer> valuesUnidentified = new HashMap<Integer, Integer>();
List<Double> chargeIdentified = summaryData.getPrecChargeVecExp(true);
int maxChargeFound = 0;
for (double key : chargeIdentified) {
int auxKey = (int) key;
int value = valuesIdentified.containsKey(auxKey) ? valuesIdentified.get(auxKey) + 1 : 1;
valuesIdentified.put(auxKey, value);
if (auxKey > maxChargeFound) maxChargeFound = auxKey;
}
List<Double> chargeUnidentified = summaryData.getPrecChargeVecExp(false);
for (double key : chargeUnidentified) {
int auxKey = (int) key;
int value = valuesUnidentified.containsKey(auxKey) ? valuesUnidentified.get(auxKey) + 1 : 1;
valuesUnidentified.put(auxKey, value);
if (auxKey > maxChargeFound) maxChargeFound = auxKey;
}
if (maxChargeFound == 0) {
recordError("No correct charges has been found");
return;
}
List<SeriesPair<Integer, Integer>> identified = new ArrayList<SeriesPair<Integer, Integer>>();
// List<SeriesPair<Integer,Integer>> unidentified = new
// ArrayList<SeriesPair<Integer,Integer>>();
// With the 'for' loop we ensure that the SeriesPair are added in an ordered way
for (int key = 1; key <= maxChargeFound; key++) {
// Only the charges found are stored int the intermediate identified
if (valuesIdentified.containsKey(key))
identified.add(new SeriesPair<Integer, Integer>(key, valuesIdentified.get(key)));
// if(valuesUnidentified.containsKey(key))
// unidentified.add(new SeriesPair<Integer, Integer>(key,valuesUnidentified.get(key)));
}
if (identified.isEmpty()) {
recordError("The experiment does not contain identified spectra");
return;
}
intermediateData = new IntermediateData();
// In this case the type and the name of the series are the same
intermediateData.addPrideChartSerie(
new DataSeries<Integer, Integer>(
DataSeriesType.IDENTIFIED_SPECTRA, "Identified Spectra", identified));
// intermediateData.addPrideChartSerie(new
// DataSeries<Integer,Integer>(DataSeriesType.UNIDENTIFIED_SPECTRA, "Unidentified Spectra",
// unidentified));
try {
intermediateData.setVariable("experimentSize", summaryData.size());
} catch (JSONException e) {
e.printStackTrace();
}
}
