public void parseStatsMessage(Message<Map<String, Map<String, byte[]>>> message)
throws IOException {
Map<String, Map<String, byte[]>> a = message.getPayload();
for (String type : a.keySet()) {
Map<String, byte[]> b = a.get(type);
for (String filename : b.keySet()) {
log.info("Processing stats for: " + filename);
BufferedInputStream bis =
new BufferedInputStream(new ByteArrayInputStream(b.get(filename)));
File outFile = null;
OutputStream out = null;
try {
outFile = new File(new File("/tmp/"), filename);
try {
out = new FileOutputStream(outFile);
byte[] buf = new byte[16884];
int len;
while ((len = bis.read(buf)) > 0) {
out.write(buf, 0, len);
}
} catch (IOException e) {
log.error("Could not write temporary file: " + outFile.getAbsolutePath());
e.printStackTrace();
} finally {
try {
bis.close();
} catch (IOException e) {
// ignore
}
}
} finally {
if (out != null) {
out.close();
}
if (outFile != null) {
File newFile = misoFileManager.storeFile(Run.class, "stats", outFile);
if (newFile != null && outFile.delete()) {
File destination = new File(newFile.getParentFile(), newFile.getName().split("-")[0]);
if (LimsUtils.checkDirectory(destination, true)) {
if (LimsUtils.unzipFile(newFile, destination)) {
newFile.delete();
}
}
}
}
}
}
}
}
