/*
* Add specified closure of OWLObject to annotation and bioentity docs.
* Not the map for bio.
*/
private Map<String, String> addClosureToAnnAndBio(
List<String> relations,
String closureName,
String closureNameLabel,
String closureMap,
OWLObject cls,
OWLGraphWrapper graph,
SolrInputDocument ann_doc,
SolrInputDocument bio_doc,
boolean isNegated) {
// Add closures to doc; label and id.
graph.addPropertyIdsForMaterialization(relations);
final Map<String, String> cmap = graph.getRelationClosureMap(cls, relations);
List<String> idClosure = new ArrayList<String>(cmap.keySet());
List<String> labelClosure = new ArrayList<String>(cmap.values());
ann_doc.addField(closureName, idClosure);
ann_doc.addField(closureNameLabel, labelClosure);
// WARNING this is a side effect for the bio-entity
// only add the class and closure, if it is a non-negated annotation
if (isNegated == false) {
for (String tid : idClosure) {
addFieldUnique(bio_doc, closureName, tid);
}
for (String tlabel : labelClosure) {
addFieldUnique(bio_doc, closureNameLabel, tlabel);
}
}
// Compile closure maps to JSON.
if (!cmap.isEmpty()) {
String jsonized_cmap = gson.toJson(cmap);
ann_doc.addField(closureMap, jsonized_cmap);
// NOTE: This is harder since we'd be adding multiple, so the is done on a collector variable
// elsewhere.
// bio_doc.addField(closureMap, jsonized_cmap);
}
if (isNegated) {
// WARNING this is a side effect for the bio-entity
// only add the class and closure, if it is a non-negated annotation
return Collections.emptyMap();
}
return cmap;
}
