public PeptideTerminalAAResult calculateForAnalysis(int analysisId) { DAOFactory daoFactory = DAOFactory.instance(); MsRunSearchAnalysisDAO rsaDao = daoFactory.getMsRunSearchAnalysisDAO(); List<Integer> runSearchAnalysisIds = rsaDao.getRunSearchAnalysisIdsForAnalysis(analysisId); PeptideTerminalAAResult result = calculateForRunSearchAnalysisIds(analysisId, runSearchAnalysisIds); result.setEnzyme(enzyme); return result; }
public PeptideTerminalAAResult calculateForRunSearchAnalysisIds( int analysisId, List<Integer> runSearchAnalysisIds) { long s = System.currentTimeMillis(); PeptideTerminalAAResult result = new PeptideTerminalAAResult(); result.setAnalysisId(analysisId); result.setScoreCutoff(this.scoreCutoff); result.setScoreType("PERC_PSM_QVAL"); result.setEnzyme(this.enzyme); for (Integer rsaId : runSearchAnalysisIds) { PeptideTerminalAAResult rsaResult = calculateForRunSearchAnalysis(analysisId, rsaId); result.combineWith(rsaResult); } long e = System.currentTimeMillis(); log.info("Total time to get results " + TimeUtils.timeElapsedSeconds(s, e) + " seconds"); log.info("Total filtered results: " + result.getTotalResultCount()); result.setEnzyme(enzyme); return result; }