public void setValue(String value) {
synchronized (DOMUtils.getDOMLock(elt)) {
{
String oldValue = getValue();
if (oldValue == null ? value == null : oldValue.equals(value)) return;
synchronized (DOMUtils.getDOMLock(elt)) {
// Get rid of any text nodes that are children of the element.
elt.normalize();
}
NodeList nl = elt.getChildNodes();
for (int i = (nl.getLength() - 1); i >= 0; i--) {
Node n = nl.item(i);
if (n.getNodeType() == Node.TEXT_NODE) {
synchronized (DOMUtils.getDOMLock(elt)) {
elt.removeChild(n);
}
IXArch context = getXArch();
if (context != null) {
context.fireXArchEvent(
new XArchEvent(
this,
XArchEvent.CLEAR_EVENT,
XArchEvent.SIMPLE_TYPE_VALUE_CHANGED,
"$SIMPLETYPEVALUE$",
null,
XArchUtils.getDefaultXArchImplementation().isContainedIn(xArch, this),
true));
}
}
}
}
elt.normalize();
Document doc = elt.getOwnerDocument();
Text txt = doc.createTextNode(value);
elt.appendChild(txt);
}
IXArch context = getXArch();
if (context != null) {
context.fireXArchEvent(
new XArchEvent(
this,
XArchEvent.SET_EVENT,
XArchEvent.SIMPLE_TYPE_VALUE_CHANGED,
"$SIMPLETYPEVALUE$",
value,
XArchUtils.getDefaultXArchImplementation().isContainedIn(xArch, this)));
}
}
public static void write() {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
Document doc;
System.out.println("Writing patient data file\n");
try {
DocumentBuilder builder = factory.newDocumentBuilder();
doc = builder.newDocument();
Element root = doc.createElement("patientdata");
root.appendChild(XMLInterface.nl(doc));
// get first PatientData from DataStore
Iterator<PatientDataStore> pdsIt = GlobalVars.pds.iterator();
while (pdsIt.hasNext()) {
PatientDataStore pds = pdsIt.next();
Node n = pds.createXMLNode(doc);
XMLInterface.addNode(doc, root, n, 0);
}
root.normalize();
// create junk to write it out (see java xml tutorial)
TransformerFactory tFactory = TransformerFactory.newInstance();
Transformer transformer = tFactory.newTransformer();
DOMSource src = new DOMSource(root);
StreamResult result = new StreamResult(new File(GlobalVars.XMLDataFile));
transformer.transform(src, result);
} catch (Exception e) {
System.err.println("Error WRITING xml patient data file");
e.printStackTrace();
}
}
/*
* Work down the children tree
* @param parent
* @param el
*/
private void processChildren(ESBNodeWithChildren parent, Element el) {
el.normalize();
parent.setData(el);
if (parent.getEsbObjectType() == null) {
String tag = el.getTagName();
if (tag.endsWith("-bus") && el.getAttribute("busid") != null) { // $NON-NLS-1$ //$NON-NLS-2$
parent.setEsbObjectType(ESBType.BUS);
} else if (tag.endsWith("-listener")
&& el.getAttribute("busidref") != null) { // $NON-NLS-1$ //$NON-NLS-2$
parent.setEsbObjectType(ESBType.LISTENER);
} else if (tag.endsWith("-provider")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.PROVIDER);
} else if (tag.equalsIgnoreCase("service")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.SERVICE);
} else if (tag.equalsIgnoreCase("listeners")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.LISTENER);
} else if (tag.equalsIgnoreCase("Actions")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.ACTION);
} else if (tag.equalsIgnoreCase("action")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.ACTION);
} else if (tag.equalsIgnoreCase("property")) { // $NON-NLS-1$
parent.setEsbObjectType(ESBType.PROPERTY);
return;
}
}
NodeList children = el.getChildNodes();
for (int i = 0; i < children.getLength(); i++) {
if (children.item(i) instanceof Element) {
Element child = (Element) children.item(i);
String name = child.getAttribute("name"); // $NON-NLS-1$
if (name == null || name.trim().length() == 0) {
name = child.getAttribute("busid"); // $NON-NLS-1$
}
if (name == null || name.trim().length() == 0) {
name = child.getAttribute("dest-name"); // $NON-NLS-1$
}
if (name == null || name.trim().length() == 0) {
name = child.getTagName();
}
if (name.equalsIgnoreCase("actions")) { // $NON-NLS-1$
name = JBossESBUIMessages.ESBDomParser_Actions_Node_Label;
} else if (name.equalsIgnoreCase("listeners")) { // $NON-NLS-1$
name = JBossESBUIMessages.ESBDomParser_Listeners_Node_Label;
}
ESBNodeWithChildren childNode = new ESBNodeWithChildren(name);
String ref = child.getAttribute("busidref"); // $NON-NLS-1$
if (ref != null && ref.trim().length() > 0) {
childNode.setRef(ref);
}
processChildren(childNode, child);
if (childNode.getEsbObjectType() != null
&& !childNode.getEsbObjectType().equals(ESBType.PROPERTY)) {
parent.addChild(childNode);
childNode.setEsbObjectType(parent.getEsbObjectType());
}
}
}
}
@Test
public final void testMove() {
try {
fs._move(new Move(basePath, sess, uri, null, newProj));
} catch (SyncFailedException e) {
fail("SyncFailedException thrown " + e);
}
File newXml = new File(newTsdir + "/" + sess + ".xml");
DocumentBuilderFactory docFactory = DocumentBuilderFactory.newInstance();
DocumentBuilder docBuilder;
Document doc = null;
try {
docBuilder = docFactory.newDocumentBuilder();
doc = docBuilder.parse(newXml);
} catch (ParserConfigurationException e) {
fail("Exception thrown " + e.getMessage());
} catch (SAXException e) {
fail("Exception thrown " + e.getMessage());
} catch (IOException e) {
fail("Exception thrown " + e.getMessage());
}
Element e = doc.getDocumentElement();
e.normalize();
Assert.assertEquals(newProj, e.getAttribute("project"));
}
public void clearValue() {
synchronized (DOMUtils.getDOMLock(elt)) {
// Get rid of any text nodes that are children of the element.
elt.normalize();
}
NodeList nl = elt.getChildNodes();
for (int i = (nl.getLength() - 1); i >= 0; i--) {
Node n = nl.item(i);
if (n.getNodeType() == Node.TEXT_NODE) {
synchronized (DOMUtils.getDOMLock(elt)) {
elt.removeChild(n);
}
IXArch context = getXArch();
if (context != null) {
context.fireXArchEvent(
new XArchEvent(
this,
XArchEvent.CLEAR_EVENT,
XArchEvent.SIMPLE_TYPE_VALUE_CHANGED,
"$SIMPLETYPEVALUE$",
null,
XArchUtils.getDefaultXArchImplementation().isContainedIn(xArch, this)));
}
}
}
}
public boolean loadURDF(String filename) {
System.out.println("[INFO]\tLoading URDF file '" + filename + "' ...");
try {
File file = new File(filename);
DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
DocumentBuilder db = dbf.newDocumentBuilder();
urdf = db.parse(file);
Element el = urdf.getDocumentElement();
el.normalize();
String docElementName = urdf.getDocumentElement().getNodeName();
if (!docElementName.equalsIgnoreCase("robot")) {
throw new RuntimeException(
"Document element is '" + docElementName + "', but should be 'robot'");
}
srdl = new StringBuffer();
} catch (Exception e) {
System.out.println("[ERROR]\tCould not load URDF file:");
e.printStackTrace();
return false;
}
System.out.println("[INFO]\tLoading URDF file '" + filename + "' -> DONE");
return true;
}
/**
* Extract the normalized text from within an element
*
* @param fromElement
* @return extracted Text node (could be null)
*/
protected Text extractText(Element fromElement) {
fromElement.normalize();
NodeList fromNodeList = fromElement.getChildNodes();
Node currentNode;
for (int i = 0; i < fromNodeList.getLength(); ++i) {
currentNode = fromNodeList.item(i);
if (currentNode.getNodeType() == Node.TEXT_NODE) {
return (Text) currentNode;
}
}
return null;
}
public static String textInElement(Element elem) {
StringBuilder buf = new StringBuilder(100);
elem.normalize();
NodeList nlst = elem.getChildNodes();
for (int i = 0, nlen = nlst.getLength(); i < nlen; i++) {
Node n = nlst.item(i);
if (n instanceof Text) {
final String data = ((Text) n).getData();
buf.append(data);
}
}
return buf.toString();
}
public String getValue() {
synchronized (DOMUtils.getDOMLock(elt)) {
elt.normalize();
NodeList nl = elt.getChildNodes();
for (int i = (nl.getLength() - 1); i >= 0; i--) {
Node n = nl.item(i);
if (n.getNodeType() == Node.TEXT_NODE) {
return n.getNodeValue();
}
}
return null;
}
}
@Override
public void endElement(final String uri, final String localName, final String qName) {
if (current == null) {
return;
}
Node parent = current.getParentNode();
// If the parent is the document itself, then we're done.
if (parent.getParentNode() == null) {
current.normalize();
current = null;
} else {
current = (Element) current.getParentNode();
}
}
/**
* Read device configuration from XML stream
*
* @param stream Stream for XML content
* @return {@link DeviceInfo}s read from stream
* @throws Exception on error
*/
private DeviceInfo[] read(final InputStream stream) throws Exception {
final DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
final DocumentBuilder db = dbf.newDocumentBuilder();
final Document doc = db.parse(stream);
// Check root element for <scan_config>, but still allow <beamline>
final Element root_node = doc.getDocumentElement();
root_node.normalize();
final String root_name = root_node.getNodeName();
if (!root_name.equals(XML_SCAN_CONFIG)) {
if (root_name.equals(XML_BEAMLINE))
Logger.getLogger(ScanConfig.class.getName())
.log(
Level.WARNING,
"<" + XML_BEAMLINE + "> is deprecated, use <" + XML_SCAN_CONFIG + ">");
else throw new Exception("Got " + root_name + " instead of " + XML_SCAN_CONFIG);
}
final NodeList hooks = root_node.getElementsByTagName(XML_SIMULATION_HOOK);
if (hooks.getLength() == 1) simulation_hook = XMLUtil.getString(hooks.item(0), "");
// Loop over <pv>s, being very lenient where they are in the document.
// This allows both <scan_config> and legacy <beamline>.
// Users who want strict checking can refer to the schema in their XML files,
// use xmllint etc.
final List<DeviceInfo> devices = new ArrayList<DeviceInfo>();
final NodeList pvs = root_node.getElementsByTagName(XML_PV);
for (int i = 0; i < pvs.getLength(); ++i) {
final Element pv = (Element) pvs.item(i);
final double slew_rate = XMLUtil.getSubelementDouble(pv, XML_SLEW_RATE, Double.NaN);
final String name = XMLUtil.getSubelementString(pv, XML_NAME, "");
if (name.isEmpty()) { // Check if it's a pattern, which then requires a slew rate
final String pattern = XMLUtil.getSubelementString(pv, XML_NAME_PATTERN, "");
if (pattern.isEmpty()) throw new Exception("Missing <pv> <name> or <name_pattern>");
if (Double.isNaN(slew_rate))
throw new Exception("Missing <slew_rate> for <pv> <name_pattern>");
patterned_slew_rates.add(new PatternedSlew(pattern, slew_rate));
} else { // Got name, maybe with alias and slew rate
final String alias = XMLUtil.getSubelementString(pv, XML_ALIAS, name);
devices.add(new DeviceInfo(name, alias));
if (!Double.isNaN(slew_rate)) pv_slew_rates.put(name, slew_rate);
}
}
return devices.toArray(new DeviceInfo[devices.size()]);
}
/**
* Save the XML description of the circuit
*
* @param output an output stream to write in
* @return true if the dump was successful, false either
*/
public boolean dumpToXml(OutputStream output) {
Document doc;
Element root;
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder;
try {
builder = factory.newDocumentBuilder();
doc = builder.newDocument();
} catch (ParserConfigurationException pce) {
System.err.println("dumpToXmlFile: unable to write XML save file.");
return false;
}
root = doc.createElement("Circuit");
root.setAttribute("name", this.getName());
for (iterNodes = this.nodes.iterator(); iterNodes.hasNext(); )
iterNodes.next().dumpToXml(doc, root);
root.normalize();
doc.appendChild(root);
try {
TransformerFactory tffactory = TransformerFactory.newInstance();
Transformer transformer = tffactory.newTransformer();
transformer.setOutputProperty(OutputKeys.INDENT, "yes");
DOMSource source = new DOMSource(doc);
StreamResult result = new StreamResult(output);
transformer.transform(source, result);
} catch (TransformerConfigurationException tce) {
System.err.println("dumpToXmlFile: Configuration Transformer exception.");
return false;
} catch (TransformerException te) {
System.err.println("dumpToXmlFile: Transformer exception.");
return false;
}
return true;
}
/**
* Returns the root element of a given input stream
*
* @param is stream to parse
* @return XML DOM element, or null if unable to parse stream
*/
public static Element getDocumentRoot(InputStream is) {
Document doc;
try {
InputSource xmlInp = new InputSource(is);
DocumentBuilderFactory docBuilderFactory = DocumentBuilderFactory.newInstance();
docBuilderFactory.setNamespaceAware(true);
DocumentBuilder parser = docBuilderFactory.newDocumentBuilder();
doc = parser.parse(xmlInp);
Element root = doc.getDocumentElement();
root.normalize();
return root;
} catch (SAXParseException err) {
log.configuratorSAXParseError(err);
} catch (SAXException e) {
log.configuratorSAXError(e);
} catch (Exception pce) {
log.configuratorError(pce);
}
return null;
}
/**
* submit HTTP Request (Both GET and POST). Parse the response into an xml document element.
*
* @param method
* @param urlString
* @param postdata
* @param usr
* @param pwd
* @return response
* @throws IOException
* @throws ParserConfigurationException
* @throws SAXException
*/
public Element submitHttpRequestAndGetDom(
String method, String urlString, String postdata, String usr, String pwd)
throws IOException, ParserConfigurationException, SAXException {
InputStream inStream = null;
Element response;
try {
inStream = submitHttpRequest(method, urlString, postdata, "", "");
// Get a response
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder docBuilder = factory.newDocumentBuilder();
Document doc = docBuilder.parse(inStream);
response = doc.getDocumentElement();
response.normalize();
} finally {
Utils.close(inStream);
}
return response;
}
public void save() {
Document doc = XMLManager.newDocument();
Element root = (Element) doc.createElement("vdct");
doc.appendChild(root);
saveRdbSettings(doc, root);
root.normalize();
String fileName = System.getProperty(Constants.VDCT_SETTINGS_FILE);
if (fileName == null) {
fileName = System.getProperty("user.home") + "/" + Constants.VDCT_SETTINGS_FILE_NAME;
}
try {
XMLManager.writeDocument(fileName, doc, null, null, null);
} catch (IOException e) {
Console.getInstance().println("Error while saving settings file!");
Console.getInstance().println(e);
}
}
/**
* Tries to find the first <code>schemaVersion=""</code> attribute in the XML root and returns
* value inside as integer.
*
* @param xmlInputStream Stream to read from.
* @param defaultValue default value to return to caller if version could not be found or
* attribute does not have an integer number.
* @return Version attribute value in root element found.
*/
private int getSchemaVersion(InputStream xmlInputStream, int defaultValue) {
try {
DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
DocumentBuilder dBuilder = dbFactory.newDocumentBuilder();
Document document = dBuilder.parse(xmlInputStream);
// optional, but recommended
// http://stackoverflow.com/questions/13786607/normalization-in-dom-parsing-with-java-how-does-it-work
Element element = document.getDocumentElement();
element.normalize();
// we expect schemaVersion attribute in the root element
if (element.hasAttribute("schemaVersion")) {
String version = element.getAttribute("schemaVersion");
return (int) Double.parseDouble(version);
} else {
return defaultValue;
}
} catch (ParserConfigurationException | SAXException | IOException | NumberFormatException e) {
LOG.warn("Error trying to get the schema version attribute.", e);
return defaultValue;
}
}
/**
* Returns the element, optionally normalizing it.
*
* @param element the element
* @param normalize whether or not to normalize the element
* @return the element
*/
public Element pull(Element element, boolean normalize) {
if (normalize) {
element.normalize();
}
return element;
}
/**
* Unmarshall a Chromosome instance from a given XML Element representation.
*
* @param a_activeConfiguration current Configuration object
* @param a_xmlElement the XML Element representation of the Chromosome
* @return a new Chromosome instance setup with the data from the XML Element representation
* @throws ImproperXMLException if the given Element is improperly structured or missing data
* @throws UnsupportedRepresentationException if the actively configured Gene implementation does
* not support the string representation of the alleles used in the given XML document
* @throws GeneCreationException if there is a problem creating or populating a Gene instance
* @author Neil Rotstan
* @since 1.0
*/
public static Gene[] getGenesFromElement(
Configuration a_activeConfiguration, Element a_xmlElement)
throws ImproperXMLException, UnsupportedRepresentationException, GeneCreationException {
// Do some sanity checking. Make sure the XML Element isn't null and
// that it in fact represents a set of genes.
// -----------------------------------------------------------------
if (a_xmlElement == null || !(a_xmlElement.getTagName().equals(GENES_TAG))) {
throw new ImproperXMLException(
"Unable to build Chromosome instance from XML Element: "
+ "given Element is not a 'genes' element.");
}
List genes = Collections.synchronizedList(new ArrayList());
// Extract the nested gene elements.
// ---------------------------------
NodeList geneElements = a_xmlElement.getElementsByTagName(GENE_TAG);
if (geneElements == null) {
throw new ImproperXMLException(
"Unable to build Gene instances from XML Element: "
+ "'"
+ GENE_TAG
+ "'"
+ " sub-elements not found.");
}
// For each gene, get the class attribute so we know what class
// to instantiate to represent the gene instance, and then find
// the child text node, which is where the string representation
// of the allele is located, and extract the representation.
// -------------------------------------------------------------
int numberOfGeneNodes = geneElements.getLength();
for (int i = 0; i < numberOfGeneNodes; i++) {
Element thisGeneElement = (Element) geneElements.item(i);
thisGeneElement.normalize();
// Fetch the class attribute and create an instance of that
// class to represent the current gene.
// --------------------------------------------------------
String geneClassName = thisGeneElement.getAttribute(CLASS_ATTRIBUTE);
Gene thisGeneObject;
Class geneClass = null;
try {
geneClass = Class.forName(geneClassName);
try {
Constructor constr = geneClass.getConstructor(new Class[] {Configuration.class});
thisGeneObject = (Gene) constr.newInstance(new Object[] {a_activeConfiguration});
} catch (NoSuchMethodException nsme) {
// Try it by calling method newGeneInternal.
// -----------------------------------------
Constructor constr = geneClass.getConstructor(new Class[] {});
thisGeneObject = (Gene) constr.newInstance(new Object[] {});
thisGeneObject =
(Gene)
PrivateAccessor.invoke(
thisGeneObject, "newGeneInternal", new Class[] {}, new Object[] {});
}
} catch (Throwable e) {
throw new GeneCreationException(geneClass, e);
}
// Find the text node and fetch the string representation of
// the allele.
// ---------------------------------------------------------
NodeList children = thisGeneElement.getChildNodes();
int childrenSize = children.getLength();
String alleleRepresentation = null;
for (int j = 0; j < childrenSize; j++) {
Element alleleElem = (Element) children.item(j);
if (alleleElem.getTagName().equals(ALLELE_TAG)) {
alleleRepresentation = alleleElem.getAttribute("value");
}
if (children.item(j).getNodeType() == Node.TEXT_NODE) {
// We found the text node. Extract the representation.
// ---------------------------------------------------
alleleRepresentation = children.item(j).getNodeValue();
break;
}
}
// Sanity check: Make sure the representation isn't null.
// ------------------------------------------------------
if (alleleRepresentation == null) {
throw new ImproperXMLException(
"Unable to build Gene instance from XML Element: "
+ "value (allele) is missing representation.");
}
// Now set the value of the gene to that reflect the
// string representation.
// -------------------------------------------------
try {
thisGeneObject.setValueFromPersistentRepresentation(alleleRepresentation);
} catch (UnsupportedOperationException e) {
throw new GeneCreationException(
"Unable to build Gene because it does not support the "
+ "setValueFromPersistentRepresentation() method.");
}
// Finally, add the current gene object to the list of genes.
// ----------------------------------------------------------
genes.add(thisGeneObject);
}
return (Gene[]) genes.toArray(new Gene[genes.size()]);
}
public void addWindowPair(WindowPairs win, int nwin, Telescope tel) {
nodelist = this.document.getElementsByTagName("RESOURCE");
// if telescope is flipped such that east is left, then take account
double dir = 1.0;
if (tel.flipped) dir = -1.0;
// System.out.println("adding window pair " + nwin);
// now - does this window already exist? If it does there's nothing more to do.
for (int i = 0; i < nodelist.getLength(); i++) {
Element elem = (Element) nodelist.item(i);
String check = "WindowPair" + nwin;
if (elem.hasAttribute("ID") && elem.getAttribute("ID").equals(check)) {
// OK, it exists, let's bail
// System.out.println("Window Pair " + nwin + " already exists.");
return;
}
}
// OK - it doesn't exist so let's put it in!
// get a template for a window descriptor by editing the main window resource
// Get elements containing the whole FoV resource and the full CCD Resource
Element ccdRes = null;
Element fovRes = null;
for (int i = 0; i < nodelist.getLength(); i++) {
Element elem = (Element) nodelist.item(i);
if (elem.hasAttribute("ID") && elem.getAttribute("ID").equals("WCCD"))
// this is the resource element detailing the main window
ccdRes = (Element) elem;
if (elem.hasAttribute("ID") && elem.getAttribute("ID").equals("UCAM_FoV"))
// this is the resource element detailing the whole FOV
fovRes = (Element) elem;
}
// let's try copying the ccd Resource element to a window resource element.
Element winRes1 = null;
winRes1 = (Element) ccdRes.cloneNode(true);
// change resource name
String id = "WindowPair" + nwin;
winRes1.setAttribute("ID", id);
winRes1.setAttribute("name", id);
// change rest of attributes
winRes1.normalize();
nodelist = winRes1.getChildNodes();
for (int i = 0; i < nodelist.getLength(); i++) {
if (nodelist.item(i).getNodeType() == 1) {
Element elem = (Element) nodelist.item(i);
// description
if (elem.getTagName().equals("DESCRIPTION")) elem.setTextContent("An ULTRACAM window");
// Short Description
if (elem.hasAttribute("ShortDescription"))
elem.setAttribute("ShortDescription", "Left Window of Pair");
if (elem.getTagName().equals("TABLE") && elem.hasAttribute("ID")) {
elem.setAttribute("ID", "LWin");
elem.setAttribute("name", "Lwin");
}
}
}
// The right window of the pair is represented by a second <TABLE> node in the
// resource, so let's copy the one that's already there
nodelist = winRes1.getElementsByTagName("TABLE");
Element TableElem = (Element) nodelist.item(0);
Element rightWin = (Element) TableElem.cloneNode(true);
rightWin.setAttribute("ID", "RWin");
rightWin.setAttribute("name", "RWin");
winRes1.appendChild(rightWin);
// normally we set the <TD> datatags here to the 4 corners of the window
double x1, x2, x3, x4, y1, y2;
double PlateScale = tel.plateScale;
double xoff = tel.delta_x;
double yoff = tel.delta_y;
try {
x1 = xoff + dir * (512 - win.getXleft(nwin)) * PlateScale;
x3 = (x1 - dir * win.getNx(nwin) * PlateScale);
y1 = yoff + (win.getYstart(nwin) - 512) * PlateScale;
y2 = y1 + win.getNy(nwin) * PlateScale;
x2 = xoff + dir * (512 - win.getXright(nwin)) * PlateScale;
x4 = (x2 - dir * win.getNx(nwin) * PlateScale);
nodelist = winRes1.getElementsByTagName("TD");
nodelist.item(0).setTextContent("" + x1);
nodelist.item(1).setTextContent("" + y1);
nodelist.item(2).setTextContent("" + x3);
nodelist.item(3).setTextContent("" + y1);
nodelist.item(4).setTextContent("" + x3);
nodelist.item(5).setTextContent("" + y2);
nodelist.item(6).setTextContent("" + x1);
nodelist.item(7).setTextContent("" + y2);
nodelist.item(8).setTextContent("" + x2);
nodelist.item(9).setTextContent("" + y1);
nodelist.item(10).setTextContent("" + x4);
nodelist.item(11).setTextContent("" + y1);
nodelist.item(12).setTextContent("" + x4);
nodelist.item(13).setTextContent("" + y2);
nodelist.item(14).setTextContent("" + x2);
nodelist.item(15).setTextContent("" + y2);
} catch (Exception e) {
e.printStackTrace();
}
// set colour to blue
nodelist = winRes1.getElementsByTagName("PARAM");
for (int i = 0; i < nodelist.getLength(); i++) {
Element elem = (Element) nodelist.item(i);
if (elem.hasAttribute("name") && (elem.getAttribute("name").equals("color")))
elem.setAttribute("value", "blue");
}
// append window to file
try {
fovRes.appendChild(winRes1);
} catch (DOMException e) {
e.printStackTrace();
}
}
private boolean parseResult(InputStream in, JUnitEETest test) throws Exception {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
Document document;
byte[] buffer = readInput(in);
try {
document = builder.parse(new ByteArrayInputStream(buffer));
} catch (SAXException e) {
log("Invalid xml:\n " + new String(buffer), Project.MSG_ERR);
throw new BuildException("Unable to parse test result (no valid xml).");
}
Element root = document.getDocumentElement();
if (root.getAttributeNode("unfinished") != null) {
log(String.valueOf(root.getAttributeNode("unfinished")), Project.MSG_DEBUG);
return false;
}
root.normalize();
NodeList testcases = root.getElementsByTagName("testsuite");
Vector<JUnitEEResultFormatter> resultFormatters = createFormatters(test);
for (int i = 0; i < testcases.getLength(); i++) {
Node node = testcases.item(i);
NamedNodeMap attributes = node.getAttributes();
String testClass = attributes.getNamedItem("name").getNodeValue();
String testPkg = attributes.getNamedItem("package").getNodeValue();
int errors = Integer.parseInt(attributes.getNamedItem("errors").getNodeValue());
int failures = Integer.parseInt(attributes.getNamedItem("failures").getNodeValue());
String testName;
if (testPkg != null && testPkg.length() != 0) {
testName = testPkg + "." + testClass;
} else {
testName = testClass;
}
for (JUnitEEResultFormatter formatter : resultFormatters) {
log("Calling formatter " + formatter + " for node " + node, Project.MSG_DEBUG);
formatter.format(node);
formatter.flush();
}
if (errors != 0) {
if (test.getErrorproperty() != null) {
getProject().setNewProperty(test.getErrorproperty(), "true");
}
if (test.getHaltonerror() || test.getHaltonfailure()) {
throw new BuildException("Test " + testName + " failed.");
}
}
if (failures != 0) {
if (test.getFailureproperty() != null) {
getProject().setNewProperty(test.getFailureproperty(), "true");
}
if (test.getHaltonfailure()) {
throw new BuildException("Test " + testName + " failed.");
}
}
}
NodeList errorMessages = root.getElementsByTagName("errorMessage");
for (int i = 0; i < errorMessages.getLength(); i++) {
Node message = errorMessages.item(i);
log(message.getFirstChild().getNodeValue(), Project.MSG_ERR);
}
if (errorMessages.getLength() != 0) {
throw new BuildException("Test execution failed.");
}
return true;
}
public static Composition readOpenRaster(File file)
throws IOException, ParserConfigurationException, SAXException {
boolean DEBUG = System.getProperty("openraster.debug", "false").equals("true");
String stackXML = null;
Map<String, BufferedImage> images = new HashMap<>();
try (ZipFile zipFile = new ZipFile(file)) {
Enumeration<? extends ZipEntry> fileEntries = zipFile.entries();
while (fileEntries.hasMoreElements()) {
ZipEntry entry = fileEntries.nextElement();
String name = entry.getName();
if (name.equalsIgnoreCase("stack.xml")) {
stackXML = extractString(zipFile.getInputStream(entry));
} else if (name.equalsIgnoreCase("mergedimage.png")) {
// no need for that
} else {
String extension = FileExtensionUtils.getFileExtension(name);
if ("png".equalsIgnoreCase(extension)) {
BufferedImage image = ImageIO.read(zipFile.getInputStream(entry));
images.put(name, image);
if (DEBUG) {
System.out.println(
String.format(
"OpenRaster::readOpenRaster: found png image in zip file at the path '%s'",
name));
}
}
}
}
}
if (stackXML == null) {
throw new IllegalStateException("No stack.xml found.");
}
if (DEBUG) {
System.out.println(String.format("OpenRaster::readOpenRaster: stackXML = '%s'", stackXML));
}
Document doc = loadXMLFromString(stackXML);
Element documentElement = doc.getDocumentElement();
documentElement.normalize();
String documentElementNodeName = documentElement.getNodeName();
if (!documentElementNodeName.equals("image")) {
throw new IllegalStateException(
String.format(
"stack.xml root element is '%s', expected: 'image'", documentElementNodeName));
}
String w = documentElement.getAttribute("w");
int compositionWidth = Integer.parseInt(w);
String h = documentElement.getAttribute("h");
int compositionHeight = Integer.parseInt(h);
if (DEBUG) {
System.out.println(
String.format(
"OpenRaster::readOpenRaster: w = '%s', h = '%s', compositionWidth = %d, compositionHeight = %d",
w, h, compositionWidth, compositionHeight));
}
Composition comp = Composition.empty(compositionWidth, compositionHeight);
comp.setFile(file);
NodeList layers = documentElement.getElementsByTagName("layer");
for (int i = layers.getLength() - 1;
i >= 0;
i--) { // stack.xml contains layers in reverse order
Node node = layers.item(i);
Element element = (Element) node;
String layerName = element.getAttribute("name");
String layerVisibility = element.getAttribute("visibility");
String layerVisible = element.getAttribute("visible");
String layerBlendingMode = element.getAttribute("composite-op");
String layerOpacity = element.getAttribute("opacity");
String layerImageSource = element.getAttribute("src");
String layerX = element.getAttribute("x");
String layerY = element.getAttribute("y");
BufferedImage image = images.get(layerImageSource);
image = ImageUtils.toCompatibleImage(image);
if (DEBUG) {
int imageWidth = image.getWidth();
int imageHeight = image.getHeight();
System.out.println(
"OpenRaster::readOpenRaster: imageWidth = "
+ imageWidth
+ ", imageHeight = "
+ imageHeight);
// Utils.debugImage(image, layerImageSource);
}
if (layerVisibility == null || layerVisibility.isEmpty()) {
// workaround: paint.net exported files use "visible" attribute instead of "visibility"
layerVisibility = layerVisible;
}
boolean visibility = layerVisibility == null ? true : layerVisibility.equals("visible");
ImageLayer layer = new ImageLayer(comp, image, layerName, null);
layer.setVisible(visibility, AddToHistory.NO);
BlendingMode blendingMode = BlendingMode.fromSVGName(layerBlendingMode);
if (DEBUG) {
System.out.println("OpenRaster::readOpenRaster: blendingMode = " + blendingMode);
}
layer.setBlendingMode(blendingMode, UpdateGUI.NO, AddToHistory.NO, false);
float opacity = Utils.parseFloat(layerOpacity, 1.0f);
layer.setOpacity(opacity, UpdateGUI.NO, AddToHistory.NO, false);
int translationX = Utils.parseInt(layerX, 0);
int translationY = Utils.parseInt(layerY, 0);
// TODO assuming that there is no layer mask
layer.setTranslation(translationX, translationY);
if (DEBUG) {
System.out.println(
String.format(
"OpenRaster::readOpenRaster: opacity = %.2f, translationX = %d, translationY = %d",
opacity, translationX, translationY));
}
comp.addLayerNoGUI(layer);
}
comp.setActiveLayer(comp.getLayer(0), AddToHistory.NO);
return comp;
}
public Map<String, ModelEntity> getEntityCache() throws GenericEntityException {
if (entityCache == null) { // don't want to block here
synchronized (ModelReader.class) {
// must check if null again as one of the blocked threads can still enter
if (entityCache == null) { // now it's safe
numEntities = 0;
numViewEntities = 0;
numFields = 0;
numRelations = 0;
numAutoRelations = 0;
entityCache = new HashMap<String, ModelEntity>();
List<ModelViewEntity> tempViewEntityList = FastList.newInstance();
List<Element> tempExtendEntityElementList = FastList.newInstance();
UtilTimer utilTimer = new UtilTimer();
for (ResourceHandler entityResourceHandler : entityResourceHandlers) {
// utilTimer.timerString("Before getDocument in file " + entityFileName);
Document document = null;
try {
document = entityResourceHandler.getDocument();
} catch (GenericConfigException e) {
throw new GenericEntityConfException(
"Error getting document from resource handler", e);
}
if (document == null) {
throw new GenericEntityConfException(
"Could not get document for " + entityResourceHandler.toString());
}
// utilTimer.timerString("Before getDocumentElement in " +
// entityResourceHandler.toString());
Element docElement = document.getDocumentElement();
if (docElement == null) {
return null;
}
docElement.normalize();
Node curChild = docElement.getFirstChild();
ModelInfo def = new ModelInfo();
def.populateFromElements(docElement);
int i = 0;
if (curChild != null) {
utilTimer.timerString(
"Before start of entity loop in " + entityResourceHandler.toString());
do {
boolean isEntity = "entity".equals(curChild.getNodeName());
boolean isViewEntity = "view-entity".equals(curChild.getNodeName());
boolean isExtendEntity = "extend-entity".equals(curChild.getNodeName());
if ((isEntity || isViewEntity) && curChild.getNodeType() == Node.ELEMENT_NODE) {
i++;
ModelEntity modelEntity =
buildEntity(entityResourceHandler, (Element) curChild, i, def);
// put the view entity in a list to get ready for the second pass to populate
// fields...
if (isViewEntity) {
tempViewEntityList.add((ModelViewEntity) modelEntity);
} else {
entityCache.put(modelEntity.getEntityName(), modelEntity);
}
} else if (isExtendEntity && curChild.getNodeType() == Node.ELEMENT_NODE) {
tempExtendEntityElementList.add((Element) curChild);
}
} while ((curChild = curChild.getNextSibling()) != null);
} else {
Debug.logWarning("No child nodes found.", module);
}
utilTimer.timerString(
"Finished "
+ entityResourceHandler.toString()
+ " - Total Entities: "
+ i
+ " FINISHED");
}
// all entity elements in, now go through extend-entity elements and add their stuff
for (Element extendEntityElement : tempExtendEntityElementList) {
String entityName = UtilXml.checkEmpty(extendEntityElement.getAttribute("entity-name"));
ModelEntity modelEntity = entityCache.get(entityName);
if (modelEntity == null)
throw new GenericEntityConfException(
"Entity to extend does not exist: " + entityName);
modelEntity.addExtendEntity(this, extendEntityElement);
}
// do a pass on all of the view entities now that all of the entities have
// loaded and populate the fields
while (!tempViewEntityList.isEmpty()) {
int startSize = tempViewEntityList.size();
Iterator<ModelViewEntity> mveIt = tempViewEntityList.iterator();
TEMP_VIEW_LOOP:
while (mveIt.hasNext()) {
ModelViewEntity curViewEntity = mveIt.next();
for (ModelViewEntity.ModelMemberEntity mve :
curViewEntity.getAllModelMemberEntities()) {
if (!entityCache.containsKey(mve.getEntityName())) {
continue TEMP_VIEW_LOOP;
}
}
mveIt.remove();
curViewEntity.populateFields(this);
for (ModelViewEntity.ModelMemberEntity mve :
curViewEntity.getAllModelMemberEntities()) {
ModelEntity me = (ModelEntity) entityCache.get(mve.getEntityName());
me.addViewEntity(curViewEntity);
}
entityCache.put(curViewEntity.getEntityName(), curViewEntity);
}
if (tempViewEntityList.size() == startSize) {
// Oops, the remaining views reference other entities
// that can't be found, or they reference other views
// that have some reference problem.
break;
}
}
if (!tempViewEntityList.isEmpty()) {
StringBuilder sb = new StringBuilder("View entities reference non-existant members:\n");
Set<String> allViews = FastSet.newInstance();
for (ModelViewEntity curViewEntity : tempViewEntityList) {
allViews.add(curViewEntity.getEntityName());
}
for (ModelViewEntity curViewEntity : tempViewEntityList) {
Set<String> perViewMissingEntities = FastSet.newInstance();
Iterator<ModelViewEntity.ModelMemberEntity> mmeIt =
curViewEntity.getAllModelMemberEntities().iterator();
while (mmeIt.hasNext()) {
ModelViewEntity.ModelMemberEntity mme = mmeIt.next();
String memberEntityName = mme.getEntityName();
if (!entityCache.containsKey(memberEntityName)) {
// this member is not a real entity
// check to see if it is a view
if (!allViews.contains(memberEntityName)) {
// not a view, it's a real missing entity
perViewMissingEntities.add(memberEntityName);
}
}
}
for (String perViewMissingEntity : perViewMissingEntities) {
sb.append("\t[")
.append(curViewEntity.getEntityName())
.append("] missing member entity [")
.append(perViewMissingEntity)
.append("]\n");
}
}
throw new GenericEntityConfException(sb.toString());
}
// auto-create relationships
TreeSet<String> orderedMessages = new TreeSet<String>();
for (String curEntityName : new TreeSet<String>(this.getEntityNames())) {
ModelEntity curModelEntity = this.getModelEntity(curEntityName);
if (curModelEntity instanceof ModelViewEntity) {
// for view-entities auto-create relationships for all member-entity relationships
// that have all corresponding fields in the view-entity
} else {
// for entities auto-create many relationships for all type one relationships
// just in case we add a new relation to the same entity, keep in a separate list and
// add them at the end
List<ModelRelation> newSameEntityRelations = FastList.newInstance();
Iterator<ModelRelation> relationsIter = curModelEntity.getRelationsIterator();
while (relationsIter.hasNext()) {
ModelRelation modelRelation = relationsIter.next();
if (("one".equals(modelRelation.getType())
|| "one-nofk".equals(modelRelation.getType()))
&& !modelRelation.isAutoRelation()) {
ModelEntity relatedEnt = null;
try {
relatedEnt = this.getModelEntity(modelRelation.getRelEntityName());
} catch (GenericModelException e) {
throw new GenericModelException(
"Error getting related entity ["
+ modelRelation.getRelEntityName()
+ "] definition from entity ["
+ curEntityName
+ "]",
e);
}
if (relatedEnt != null) {
// don't do relationship to the same entity, unless title is "Parent", then do a
// "Child" automatically
String targetTitle = modelRelation.getTitle();
if (curModelEntity.getEntityName().equals(relatedEnt.getEntityName())
&& "Parent".equals(targetTitle)) {
targetTitle = "Child";
}
// create the new relationship even if one exists so we can show what we are
// looking for in the info message
ModelRelation newRel = new ModelRelation();
newRel.setModelEntity(relatedEnt);
newRel.setRelEntityName(curModelEntity.getEntityName());
newRel.setTitle(targetTitle);
newRel.setAutoRelation(true);
Set<String> curEntityKeyFields = FastSet.newInstance();
for (int kmn = 0; kmn < modelRelation.getKeyMapsSize(); kmn++) {
ModelKeyMap curkm = modelRelation.getKeyMap(kmn);
ModelKeyMap newkm = new ModelKeyMap();
newRel.addKeyMap(newkm);
newkm.setFieldName(curkm.getRelFieldName());
newkm.setRelFieldName(curkm.getFieldName());
curEntityKeyFields.add(curkm.getFieldName());
}
// decide whether it should be one or many by seeing if the key map represents
// the complete pk of the relEntity
if (curModelEntity.containsAllPkFieldNames(curEntityKeyFields)) {
// always use one-nofk, we don't want auto-fks getting in for these automatic
// ones
newRel.setType("one-nofk");
// to keep it clean, remove any additional keys that aren't part of the PK
List<String> curPkFieldNames = curModelEntity.getPkFieldNames();
Iterator<ModelKeyMap> nrkmIter = newRel.getKeyMapsIterator();
while (nrkmIter.hasNext()) {
ModelKeyMap nrkm = nrkmIter.next();
String checkField = nrkm.getRelFieldName();
if (!curPkFieldNames.contains(checkField)) {
nrkmIter.remove();
}
}
} else {
newRel.setType("many");
}
ModelRelation existingRelation =
relatedEnt.getRelation(targetTitle + curModelEntity.getEntityName());
if (existingRelation == null) {
numAutoRelations++;
if (curModelEntity.getEntityName().equals(relatedEnt.getEntityName())) {
newSameEntityRelations.add(newRel);
} else {
relatedEnt.addRelation(newRel);
}
} else {
if (newRel.equals(existingRelation)) {
// don't warn if the target title+entity = current title+entity
if (!(targetTitle + curModelEntity.getEntityName())
.equals(modelRelation.getTitle() + modelRelation.getRelEntityName())) {
// String errorMsg = "Relation already exists to entity [] with title [" +
// targetTitle + "],from entity []";
String message =
"Entity ["
+ relatedEnt.getPackageName()
+ ":"
+ relatedEnt.getEntityName()
+ "] already has identical relationship to entity ["
+ curModelEntity.getEntityName()
+ "] title ["
+ targetTitle
+ "]; would auto-create: type ["
+ newRel.getType()
+ "] and fields ["
+ newRel.keyMapString(",", "")
+ "]";
orderedMessages.add(message);
}
} else {
String message =
"Existing relationship with the same name, but different specs found from what would be auto-created for Entity ["
+ relatedEnt.getEntityName()
+ "] and relationship to entity ["
+ curModelEntity.getEntityName()
+ "] title ["
+ targetTitle
+ "]; would auto-create: type ["
+ newRel.getType()
+ "] and fields ["
+ newRel.keyMapString(",", "")
+ "]";
Debug.logVerbose(message, module);
}
}
} else {
String errorMsg =
"Could not find related entity ["
+ modelRelation.getRelEntityName()
+ "], no reverse relation added.";
Debug.logWarning(errorMsg, module);
}
}
}
if (newSameEntityRelations.size() > 0) {
for (ModelRelation newRel : newSameEntityRelations) {
curModelEntity.addRelation(newRel);
}
}
}
}
for (String message : orderedMessages) {
Debug.logInfo(message, module);
}
Debug.log(
"FINISHED LOADING ENTITIES - ALL FILES; #Entities="
+ numEntities
+ " #ViewEntities="
+ numViewEntities
+ " #Fields="
+ numFields
+ " #Relationships="
+ numRelations
+ " #AutoRelationships="
+ numAutoRelations,
module);
}
}
}
return entityCache;
}
private static void loadConfig(java.io.InputStream is) throws java.io.IOException {
root.subKeys = new java.util.HashMap();
javax.xml.parsers.DocumentBuilderFactory factory =
javax.xml.parsers.DocumentBuilderFactory.newInstance();
try {
javax.xml.parsers.DocumentBuilder builder = factory.newDocumentBuilder();
org.w3c.dom.Document document = builder.parse(is);
org.w3c.dom.Element rootElement = document.getDocumentElement();
rootElement.normalize();
org.w3c.dom.NodeList childNodes = rootElement.getChildNodes();
for (int i = 0; i < childNodes.getLength(); i++) {
org.w3c.dom.Node childNode = childNodes.item(i);
if (childNode instanceof org.w3c.dom.Element) {
org.w3c.dom.Element childElement = (org.w3c.dom.Element) childNode;
String tagName = childElement.getTagName();
if (tagName.equals("key")) {
Key subKey = loadKey(childElement);
if ((subKey != null) && (subKey.name != null)) {
root.subKeys.put(subKey.name, subKey);
// System.out.println( "loaded subKey: " + subKey );
}
}
}
}
// } catch( org.xml.sax.SAXParseException spe ) {
// if( spe.getException() != null ) {
// edu.cmu.cs.stage3.alice.authoringtool.AuthoringTool.showErrorDialog( "Error parsing
// preferences file; line " + spe.getLineNumber() + ", uri " + spe.getSystemId() + "\nmessage:
// " + spe.getMessage(), spe.getException() );
// } else {
// edu.cmu.cs.stage3.alice.authoringtool.AuthoringTool.showErrorDialog( "Error parsing
// preferences file; line " + spe.getLineNumber() + ", uri " + spe.getSystemId() + "\nmessage:
// " + spe.getMessage(), spe );
// }
// } catch( org.xml.sax.SAXException sxe ) {
// if( sxe.getException() != null ) {
// edu.cmu.cs.stage3.alice.authoringtool.AuthoringTool.showErrorDialog( "Error parsing
// preferences file.", sxe.getException() );
// } else {
// edu.cmu.cs.stage3.alice.authoringtool.AuthoringTool.showErrorDialog( "Error parsing
// preferences file.", sxe );
// }
// } catch( javax.xml.parsers.ParserConfigurationException pce ) {
// edu.cmu.cs.stage3.alice.authoringtool.AuthoringTool.showErrorDialog( "Error parsing
// preferences file.", pce );
// }
} catch (Exception e) {
edu.cmu.cs.stage3.swing.DialogManager.showMessageDialog(
java.util.ResourceBundle.getBundle(
"edu/cmu/cs/stage3/alice/authoringtool/util/Configuration")
.getString(
"ALICE_HAD_TROUBLE_READING_YOUR_PREFERENCES_BUT_WILL_CONTINUE_TO_RUN_NORMALLY"),
java.util.ResourceBundle.getBundle(
"edu/cmu/cs/stage3/alice/authoringtool/util/Configuration")
.getString("UNABLE_TO_LOAD_PREFERENCES"),
javax.swing.JOptionPane.WARNING_MESSAGE);
}
}
