@Get("xml")
public Representation toXml() {
try {
DomRepresentation representation = new DomRepresentation(MediaType.TEXT_XML);
// Generate a DOM document representing the item.
Document d = representation.getDocument();
Element eltItem = d.createElement("item");
d.appendChild(eltItem);
Element eltName = d.createElement("name");
eltName.appendChild(d.createTextNode(item.getName()));
eltItem.appendChild(eltName);
Element eltDescription = d.createElement("description");
eltDescription.appendChild(d.createTextNode(item.getDescription()));
eltItem.appendChild(eltDescription);
d.normalizeDocument();
// Returns the XML representation of this document.
return representation;
} catch (IOException e) {
e.printStackTrace();
}
return null;
}
/**
* This method serializes the BPMN2 model into an XML representation.
*
* @param defns The BPMN2 model
* @param os The output stream
* @param prefixes The optional map of prefixes against namespaces
* @param classLoader The classloader to be used
* @throws IOException Failed to serialize
* @deprecated Should use the org.savara.bpmn2.model.util.BPMN2ModelUtil class
*/
public static void serialize(
TDefinitions defns,
java.io.OutputStream os,
java.util.Map<String, String> prefixes,
java.lang.ClassLoader classLoader)
throws IOException {
try {
org.savara.bpmn2.model.ObjectFactory factory = new org.savara.bpmn2.model.ObjectFactory();
// JAXBContext context = JAXBContext.newInstance(TDefinitions.class);
JAXBContext context = JAXBContext.newInstance("org.savara.bpmn2.model", classLoader);
Marshaller marshaller = context.createMarshaller();
marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
// SAVARA-175 - it seems that to get jaxb to generate the namespace prefix
// mapping at the top of the document, it is necessary to (1) have the TProcess
// created with the original namespace prefix mappings, which on initial
// marshalling will be moved on to the elements that have the prefix, and
// then (2) reapply the prefixes by building the DOM, adding the prefix
// namespace info, and then transforming back to text.
if (prefixes != null) {
java.io.ByteArrayOutputStream baos = new java.io.ByteArrayOutputStream();
marshaller.marshal(factory.createDefinitions(defns), baos);
// Convert to DOM
javax.xml.parsers.DocumentBuilderFactory dbfactory =
javax.xml.parsers.DocumentBuilderFactory.newInstance();
dbfactory.setNamespaceAware(false);
org.w3c.dom.Document doc =
dbfactory
.newDocumentBuilder()
.parse(new java.io.ByteArrayInputStream(baos.toByteArray()));
for (String ns : prefixes.keySet()) {
String prefix = prefixes.get(ns);
doc.getDocumentElement().setAttribute("xmlns:" + prefix, ns);
}
doc.normalizeDocument();
javax.xml.transform.dom.DOMSource source = new javax.xml.transform.dom.DOMSource(doc);
javax.xml.transform.stream.StreamResult result =
new javax.xml.transform.stream.StreamResult(os);
javax.xml.transform.Transformer transformer =
javax.xml.transform.TransformerFactory.newInstance().newTransformer();
transformer.transform(source, result);
} else {
marshaller.marshal(factory.createDefinitions(defns), os);
}
} catch (Exception e) {
throw new IOException("Failed to serialize BPMN2 definitions", e);
}
}
public static void validate(Document d, String schema, DOMErrorHandler handler) {
DOMConfiguration config = d.getDomConfig();
config.setParameter("schema-type", "http://www.w3.org/2001/XMLSchema");
config.setParameter("validate", true);
config.setParameter("schema-location", schema);
config.setParameter("resource-resolver", new ClasspathResourceResolver());
config.setParameter("error-handler", handler);
d.normalizeDocument();
}
public static Document getDocument(File xml)
throws ParserConfigurationException, SAXException, IOException {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder documentBuilder = factory.newDocumentBuilder();
Document document = documentBuilder.parse(xml);
document.normalizeDocument();
return document;
}
@Post("xml")
public Representation acceptItem(Representation entity) {
DomRepresentation result = null;
Document d = null;
try {
DomRepresentation input = new DomRepresentation(entity);
Document doc = input.getDocument();
// handle input document
Element rootEl = doc.getDocumentElement();
String usernameDoctor = XMLUtils.getTextValue(rootEl, "username");
// output
result = new DomRepresentation(MediaType.TEXT_XML);
d = result.getDocument();
try {
ObjectifyService.register(Patient.class);
ObjectifyService.register(Relative.class);
} catch (Exception e) {
}
Key<Relative> doctor = new Key<Relative>(Relative.class, usernameDoctor);
Objectify ofy = ObjectifyService.begin();
List<Patient> listRU = ofy.query(Patient.class).filter("doctor", doctor).list();
Element root = d.createElement("getUsers");
d.appendChild(root);
Element eltName4 = d.createElement("getUsersList");
for (Patient us : listRU) {
Element user = d.createElement("user");
user.setAttribute("firstname", "" + us.getFirstName());
user.setAttribute("lastname", "" + us.getLastName());
user.setAttribute("username", "" + us.getUsername());
user.setAttribute("password", "" + us.getPassword());
user.appendChild(d.createTextNode(us.getUsername()));
eltName4.appendChild(user);
}
root.appendChild(eltName4);
d.normalizeDocument();
} catch (Exception e) {
result = XMLUtils.createXMLError("get doctors list error", "" + e.getMessage());
}
return result;
}
public Document extractDocument(InputSource inputSource, XmlRequestMatcher xmlRequestMatcher)
throws SAXException {
try {
Document document = xmlRequestMatcher.documentBuilder.parse(inputSource);
document.normalizeDocument();
trimNode(document);
return document;
} catch (IOException e) {
throw new RuntimeException(e);
}
}
public static Map<String, NutMap> read(String path) {
Map<String, NutMap> maps = new LinkedHashMap<>();
Document doc = Xmls.xml(DubboConfigureReader.class.getClassLoader().getResourceAsStream(path));
doc.normalizeDocument();
Element top = doc.getDocumentElement();
NodeList list = top.getChildNodes();
int count = list.getLength();
for (int i = 0; i < count; i++) {
Node node = list.item(i);
if (node instanceof Element) {
Element ele = (Element) node;
String eleName = ele.getNodeName();
if (!eleName.startsWith("dubbo:")) continue; // 跳过非dubbo节点
String typeName = eleName.substring("dubbo:".length());
NutMap attrs = toAttrMap(ele.getAttributes());
log.debug("found " + typeName);
String genBeanName = ele.getAttribute("id");
if (Strings.isBlank(genBeanName)) {
if ("protocol".equals(typeName)) genBeanName = "dubbo";
else {
genBeanName = ele.getAttribute("interface");
if (Strings.isBlank(genBeanName)) {
try {
genBeanName =
Class.forName(
"com.alibaba.dubbo.config." + Strings.upperFirst(typeName) + "Config")
.getName();
} catch (ClassNotFoundException e) {
throw Lang.wrapThrow(e);
}
}
}
if (maps.containsKey(genBeanName)) {
int _count = 2;
while (true) {
String key = genBeanName + "_" + _count;
if (maps.containsKey(key)) {
_count++;
continue;
}
genBeanName += "_" + _count;
break;
}
}
}
attrs.put("_typeName", typeName);
maps.put(genBeanName, attrs);
}
}
return maps;
}
/**
* Handle HTTP GET Metod / xml
*
* @return an XML list of contacts.
*/
@Get("xml")
public Representation toXML() {
// System.out.println("Request Original Ref " + getOriginalRef());
// System.out.println("Request Entity " + getRequest().getEntityAsText()
// +
// " entity mediaType " + getRequest().getEntity().getMediaType());
Reference ref = getRequest().getResourceRef();
final String baseURL = ref.getHierarchicalPart();
Form formQuery = ref.getQueryAsForm();
try {
DomRepresentation representation = new DomRepresentation(MediaType.TEXT_XML);
Document d = representation.getDocument();
Element elContacts = d.createElement(CONTACTS);
d.appendChild(elContacts);
Iterator<Contact> it =
getSortedContacts(formQuery.getFirstValue(REQUEST_QUERY_SORT, LAST_NAME)).iterator();
while (it.hasNext()) {
Contact contact = it.next();
Element el = d.createElement(CONTACT);
Element id = d.createElement(ID);
id.appendChild(d.createTextNode(String.format("%s", contact.getId())));
el.appendChild(id);
Element firstname = d.createElement(FIRST_NAME);
firstname.appendChild(d.createTextNode(contact.getFirstName()));
el.appendChild(firstname);
Element lastname = d.createElement(LAST_NAME);
lastname.appendChild(d.createTextNode(contact.getLastName()));
el.appendChild(lastname);
Element url = d.createElement(URL);
url.appendChild(d.createTextNode(String.format("%s/%s", baseURL, contact.getId())));
el.appendChild(url);
elContacts.appendChild(el);
}
d.normalizeDocument();
return representation;
} catch (Exception e) {
setStatus(Status.SERVER_ERROR_INTERNAL);
return null;
}
}
/**
* Adds a new gerritProject configuration to the gived XML document. Assumes that the document is
* structured like the original project config.xml in the LocalData for this class.
*
* @param gerritProjectPattern the {@link GerritProject#pattern} to set.
* @param document the config.xml
* @return the new xml
* @throws Exception if so
*/
private String changeConfigXml(String gerritProjectPattern, Document document) throws Exception {
Node projects = xPath(document, "/project/triggers/*[1]/gerritProjects");
String tagName =
"com.sonyericsson.hudson.plugins.gerrit.trigger.hudsontrigger.data.GerritProject";
Node newProject = document.createElement(tagName);
setXmlConfig(document, newProject, "ANT", gerritProjectPattern);
Node branches = document.createElement("branches");
tagName = "com.sonyericsson.hudson.plugins.gerrit.trigger.hudsontrigger.data.Branch";
Node branch = document.createElement(tagName);
setXmlConfig(document, branch, "ANT", "**");
branches.appendChild(branch);
newProject.appendChild(branches);
projects.appendChild(newProject);
document.normalizeDocument();
return xmlToString(document);
}
public ResponseConnector(String datafile, String prefix, String keys, IResolveContent resolver) {
_prefix = prefix;
if (keys == null || keys.equals("")) return;
Document doc = null;
try {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
doc = builder.parse(new File(datafile));
doc.normalizeDocument();
String[] parts = keys.split(";");
XPath xpath = XPathFactoryInstanceHolder.get().newXPath();
for (String part : parts) {
NodeList nodes =
(NodeList)
xpath.evaluate(
"Test[@name='" + part + "']", doc.getDocumentElement(), XPathConstants.NODESET);
if (nodes.getLength() == 0) continue;
Node node = nodes.item(0);
NodeList responses = (NodeList) xpath.evaluate("Response", node, XPathConstants.NODESET);
for (int i = 0; i < responses.getLength(); ++i) {
Element response = (Element) responses.item(i);
String value = resolver.resolve(response);
_data.put(response.getAttribute("path"), value);
}
}
} catch (ParserConfigurationException e) {
throw new RuntimeException("Parser Configuration Error ", e);
} catch (IOException e) {
throw new RuntimeException("IO Error ", e);
} catch (SAXException e) {
throw new RuntimeException("SAX Error ", e);
} catch (XPathExpressionException e) {
throw new RuntimeException("XPath exception", e);
}
}
protected Document xmlFile2Doc(File f) throws Exception {
InputStream in = null;
try {
in = new FileInputStream(f);
DocumentBuilderFactory domFact = DocumentBuilderFactory.newInstance();
domFact.setNamespaceAware(true);
domFact.setIgnoringElementContentWhitespace(true);
domFact.setIgnoringComments(true);
domFact.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
DocumentBuilder domBuilder = domFact.newDocumentBuilder();
Document doc = domBuilder.parse(in);
doc.normalizeDocument();
return doc;
} finally {
if (in != null) {
try {
in.close();
} catch (Exception e) {
}
}
}
}
protected Document parseCallResult(InputStream data, IFacebookMethod method)
throws FacebookException, IOException {
try {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(namespaceAware);
DocumentBuilder builder = factory.newDocumentBuilder();
Document doc = builder.parse(data);
doc.normalizeDocument();
stripEmptyTextNodes(doc);
printDom(doc, method.methodName() + "| ");
NodeList errors = doc.getElementsByTagName(ERROR_TAG);
if (errors.getLength() > 0) {
int errorCode =
Integer.parseInt(errors.item(0).getFirstChild().getFirstChild().getTextContent());
String message = errors.item(0).getFirstChild().getNextSibling().getTextContent();
throw new FacebookException(errorCode, message);
}
return doc;
} catch (ParserConfigurationException ex) {
throw new RuntimeException("Trouble configuring XML Parser", ex);
} catch (SAXException ex) {
throw new RuntimeException("Trouble parsing XML from facebook", ex);
}
}
/**
* DOM3 method: Normalize the document with namespaces
*
* @param doc
* @return
*/
public static Document normalizeNamespaces(Document doc) {
DOMConfiguration docConfig = doc.getDomConfig();
docConfig.setParameter("namespaces", Boolean.TRUE);
doc.normalizeDocument();
return doc;
}
@Override
public String invokeIncidentSearchRequest(
IncidentSearchRequest incidentSearchRequest, String federatedQueryID, Element samlToken)
throws Exception {
if (allowQueriesWithoutSAMLToken) {
if (samlToken == null) {
// Add SAML token to request call
samlToken =
SAMLTokenUtils.createStaticAssertionAsElement(
"https://idp.ojbc-local.org:9443/idp/shibboleth",
SignatureConstants.ALGO_ID_C14N_EXCL_OMIT_COMMENTS,
SignatureConstants.ALGO_ID_SIGNATURE_RSA_SHA1,
true,
true,
null);
}
}
if (samlToken == null) {
throw new Exception("No SAML token provided. Unable to perform query.");
}
// POJO to XML Request
// When multiple operations are supported, we will call the appropriate POJO to XML Method
Document incidentRequestPayload =
RequestMessageBuilderUtilities.createIncidentSearchRequest(
incidentSearchRequest, cityTownCodelistNamespace, cityTownCodelistElementName);
incidentRequestPayload.normalizeDocument();
log.debug(OJBUtils.getStringFromDocument(incidentRequestPayload));
// Create exchange
Exchange senderExchange = new DefaultExchange(camelContext, ExchangePattern.InOnly);
// Set exchange body to XML Request message
senderExchange.getIn().setBody(incidentRequestPayload);
// Set reply to and WS-Addressing message ID
senderExchange.getIn().setHeader("federatedQueryRequestGUID", federatedQueryID);
senderExchange.getIn().setHeader("WSAddressingReplyTo", this.getReplyToAddress());
// Set the token header so that CXF can retrieve this on the outbound call
String tokenID = senderExchange.getExchangeId();
senderExchange.getIn().setHeader("tokenID", tokenID);
OJBSamlMap.putToken(tokenID, samlToken);
incidentSearchMessageProcessor.sendResponseMessage(camelContext, senderExchange);
// Put message ID and "noResponse" place holder.
putRequestInMap(federatedQueryID);
String response = pollMap(federatedQueryID);
if (response.length() > 500) {
log.debug("Here is the response (truncated): " + response.substring(0, 500));
} else {
log.debug("Here is the response: " + response);
}
// This is a defensive check in case the polling completes and the service has not yet returned
// a response
// In this case we send back an empty search result
if (response.equals(NO_RESPONSE)) {
log.debug("Endpoints timed out and no response recieved at web app, create error response");
response = MergeNotificationErrorProcessor.returnMergeNotificationErrorMessage();
}
// return response here
return response;
}
/**
* Pulls the root element of a DOM document.
*
* @param document the document
* @param normalize whether or not to normalize the document
* @return the element
*/
public Element pull(Document document, boolean normalize) {
if (normalize) {
document.normalizeDocument();
}
return pull(document.getDocumentElement(), normalize);
}
public static void start(CommandLine commandLine) throws Exception {
List<SimpleWitness> witnesses = null;
Function<String, Stream<String>> tokenizer = SimplePatternTokenizer.BY_WS_OR_PUNCT;
Function<String, String> normalizer = SimpleTokenNormalizers.LC_TRIM_WS;
Comparator<Token> comparator = new EqualityTokenComparator();
CollationAlgorithm collationAlgorithm = null;
boolean joined = true;
final String[] witnessSpecs = commandLine.getArgs();
final InputStream[] inputStreams = new InputStream[witnessSpecs.length];
for (int wc = 0, wl = witnessSpecs.length; wc < wl; wc++) {
try {
inputStreams[wc] = argumentToInputStream(witnessSpecs[wc]);
} catch (MalformedURLException urlEx) {
throw new ParseException("Invalid resource: " + witnessSpecs[wc]);
}
}
if (inputStreams.length < 1) {
throw new ParseException("No input resource(s) given");
} else if (inputStreams.length < 2) {
try (InputStream inputStream = inputStreams[0]) {
final SimpleCollation collation = JsonProcessor.read(inputStream);
witnesses = collation.getWitnesses();
collationAlgorithm = collation.getAlgorithm();
joined = collation.isJoined();
}
}
final String script = commandLine.getOptionValue("s");
try {
final PluginScript pluginScript =
(script == null
? PluginScript.read("<internal>", new StringReader(""))
: PluginScript.read(argumentToInput(script)));
tokenizer = Optional.ofNullable(pluginScript.tokenizer()).orElse(tokenizer);
normalizer = Optional.ofNullable(pluginScript.normalizer()).orElse(normalizer);
comparator = Optional.ofNullable(pluginScript.comparator()).orElse(comparator);
} catch (IOException e) {
throw new ParseException("Failed to read script '" + script + "' - " + e.getMessage());
}
switch (commandLine.getOptionValue("a", "").toLowerCase()) {
case "needleman-wunsch":
collationAlgorithm = CollationAlgorithmFactory.needlemanWunsch(comparator);
break;
case "medite":
collationAlgorithm =
CollationAlgorithmFactory.medite(comparator, SimpleToken.TOKEN_MATCH_EVALUATOR);
break;
case "gst":
collationAlgorithm = CollationAlgorithmFactory.greedyStringTiling(comparator, 2);
break;
default:
collationAlgorithm =
Optional.ofNullable(collationAlgorithm)
.orElse(CollationAlgorithmFactory.dekker(comparator));
break;
}
if (witnesses == null) {
final Charset inputCharset =
Charset.forName(commandLine.getOptionValue("ie", StandardCharsets.UTF_8.name()));
final boolean xmlMode = commandLine.hasOption("xml");
final XPathExpression tokenXPath =
XPathFactory.newInstance()
.newXPath()
.compile(commandLine.getOptionValue("xp", "//text()"));
witnesses = new ArrayList<>(inputStreams.length);
for (int wc = 0, wl = inputStreams.length; wc < wl; wc++) {
try (InputStream stream = inputStreams[wc]) {
final String sigil = "w" + (wc + 1);
if (!xmlMode) {
final BufferedReader reader =
new BufferedReader(new InputStreamReader(stream, inputCharset));
final StringWriter writer = new StringWriter();
final char[] buf = new char[1024];
while (reader.read(buf) != -1) {
writer.write(buf);
}
witnesses.add(new SimpleWitness(sigil, writer.toString(), tokenizer, normalizer));
} else {
final DocumentBuilder documentBuilder =
DocumentBuilderFactory.newInstance().newDocumentBuilder();
final Document document = documentBuilder.parse(stream);
document.normalizeDocument();
final SimpleWitness witness = new SimpleWitness(sigil);
final NodeList tokenNodes =
(NodeList) tokenXPath.evaluate(document, XPathConstants.NODESET);
final List<Token> tokens = new ArrayList<>(tokenNodes.getLength());
for (int nc = 0; nc < tokenNodes.getLength(); nc++) {
final String tokenText = tokenNodes.item(nc).getTextContent();
tokens.add(new SimpleToken(witness, tokenText, normalizer.apply(tokenText)));
}
witness.setTokens(tokens);
witnesses.add(witness);
}
}
}
}
final VariantGraph variantGraph = new VariantGraph();
collationAlgorithm.collate(variantGraph, witnesses);
if (joined && !commandLine.hasOption("t")) {
VariantGraph.JOIN.apply(variantGraph);
}
final String output = commandLine.getOptionValue("o", "-");
final Charset outputCharset =
Charset.forName(commandLine.getOptionValue("oe", StandardCharsets.UTF_8.name()));
final String outputFormat = commandLine.getOptionValue("f", "json").toLowerCase();
try (PrintWriter out = argumentToOutput(output, outputCharset)) {
final SimpleVariantGraphSerializer serializer =
new SimpleVariantGraphSerializer(variantGraph);
if ("csv".equals(outputFormat)) {
serializer.toCsv(out);
} else if ("dot".equals(outputFormat)) {
serializer.toDot(out);
} else if ("graphml".equals(outputFormat) || "tei".equals(outputFormat)) {
XMLStreamWriter xml = null;
try {
xml = XMLOutputFactory.newInstance().createXMLStreamWriter(out);
xml.writeStartDocument(outputCharset.name(), "1.0");
if ("graphml".equals(outputFormat)) {
serializer.toGraphML(xml);
} else {
serializer.toTEI(xml);
}
xml.writeEndDocument();
} catch (XMLStreamException e) {
throw new IOException(e);
} finally {
if (xml != null) {
try {
xml.close();
} catch (XMLStreamException e) {
// ignored
}
}
}
} else {
JsonProcessor.write(variantGraph, out);
}
}
}
