public void visit(OWLAnnotationAssertionAxiom anno) {
if (lastLangMatchIndex > 0
&& // a perfect match - no need to carry on search
anno.getProperty().equals(prop)) {
anno.getValue().accept(this);
}
}
public static boolean isDeprecated(OWLModelManager p4Manager, OWLObject o) {
if (!(o instanceof OWLEntity)) {
return false;
}
for (OWLOntology ontology : p4Manager.getActiveOntologies()) {
for (OWLAnnotationAssertionAxiom assertion :
ontology.getAnnotationAssertionAxioms(((OWLEntity) o).getIRI())) {
if (!assertion.getProperty().isDeprecated()) {
continue;
}
if (!(assertion.getValue() instanceof OWLLiteral)) {
continue;
}
OWLLiteral value = (OWLLiteral) assertion.getValue();
if (!value.isBoolean()) {
continue;
}
if (value.parseBoolean()) {
return true;
}
}
}
return false;
}
public Map<String, OWLIndividual> returnSitesInOntology() {
// map that contains the correspondance between the names of the sites
// and their OWLIndividual representations.
Map<String, OWLIndividual> returnMap = new HashMap<>();
List<OWLIndividual> returnList = new ArrayList<>();
OWLAnnotationProperty hasNameAnnotationProperty =
OWLFactory.getOWLAnnotationProperty(":individualName", topIxPrefixManager);
OWLClassExpression tempSiteClassExpression =
OWLFactory.getOWLClass(":Site", topIxPrefixManager);
for (OWLClassAssertionAxiom tempClassAssAx :
topIxOnt.getClassAssertionAxioms(tempSiteClassExpression)) {
returnList.add(tempClassAssAx.getIndividual());
Set<OWLAnnotationAssertionAxiom> tempSiteAnnotationsSet =
topIxOnt.getAnnotationAssertionAxioms(
tempClassAssAx.getIndividual().asOWLNamedIndividual().getIRI());
for (OWLAnnotationAssertionAxiom tempAnnotationAssertionAxiom : tempSiteAnnotationsSet) {
if (tempAnnotationAssertionAxiom.getProperty().equals(hasNameAnnotationProperty)) {
String tempString = tempAnnotationAssertionAxiom.getValue().toString();
logger.info(tempString);
tempString =
tempString.substring(tempString.indexOf('"') + 1, tempString.indexOf('^') - 1);
logger.info(tempString);
logger.info(tempClassAssAx.getIndividual().toString());
returnMap.put(tempString, tempClassAssAx.getIndividual());
}
}
}
return returnMap;
}
public void retrieveRoomsMap() {
// this method retrieves the rooms to be insserted in the two rooms lists.
// it deposits the retrieved data in a map where the key is the room name (String) and the value
// is the corresponding entity IRI.
// the above data structure will be used in passing the entity IRIs in the jess working memory
// when constructing the facts
// when the respective room name (String) is selected in the rooms list combo box.
for (OWLSubClassOfAxiom scoAx :
topIxOnt.getSubClassAxiomsForSuperClass(
OWLFactory.getOWLClass(
IRI.create(
"http://www.semanticweb.org/ontologies/ptyxiaki_v0.6/2011/5/Ontology1308067064597.owl#Room")))) {
String tmpS = scoAx.getSubClass().toString();
Set<OWLAnnotationAssertionAxiom> tmpAnnSet =
topIxOnt.getAnnotationAssertionAxioms(
IRI.create(tmpS.substring(tmpS.indexOf('<') + 1, tmpS.indexOf('>'))));
for (OWLAnnotationAssertionAxiom aaAx : tmpAnnSet) {
if (aaAx.getProperty()
.toString()
.equals(
"<http://www.semanticweb.org/ontologies/ptyxiaki_v0.6/2011/5/Ontology1308067064597.owl#classID>")) {
roomToIRI.put(
aaAx.getValue().toString().substring(1, aaAx.getValue().toString().indexOf('^') - 1),
tmpS.substring(tmpS.indexOf('<') + 1, tmpS.indexOf('>')));
}
}
}
}
public boolean isDataRetrievable(OWLProperty prop) {
for (OWLAnnotationAssertionAxiom aaa : _ontology.getAnnotationAssertionAxioms(prop.getIRI())) {
if (aaa.getProperty().getIRI().toString().equals(DomainOntology.dataRetrievable)) {
return true;
}
}
return false;
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
write("Annotation");
axiom.getSubject().accept(this);
writeSpace();
axiom.getProperty().accept(this);
writeSpace();
axiom.getValue().accept(this);
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
axiom.getSubject().accept(this);
OWLAnnotationSubject subject = (OWLAnnotationSubject) obj;
axiom.getProperty().accept(this);
OWLAnnotationProperty prop = (OWLAnnotationProperty) obj;
axiom.getValue().accept(this);
OWLAnnotationValue value = (OWLAnnotationValue) obj;
obj =
dataFactory.getOWLAnnotationAssertionAxiom(
prop, subject, value, duplicateAxiomAnnotations(axiom));
}
public Set<OWLAxiom> write(OWLAnnotationProperty property) {
Set<OWLAxiom> axioms = new HashSet<OWLAxiom>();
axioms.addAll(writeEntityStart(ANNOTATION_PROPERTY, property));
if (!isFiltered(AxiomType.ANNOTATION_ASSERTION)) {
for (OWLOntology ont : getOntologies()) {
Set<OWLAnnotation> annos = new TreeSet<OWLAnnotation>();
for (OWLAnnotationAssertionAxiom ax : ont.getAnnotationAssertionAxioms(property.getIRI())) {
if (isDisplayed(ax)) {
annos.add(ax.getAnnotation());
}
}
writeSection(ANNOTATIONS, annos, ",", true, ont);
}
}
if (!isFiltered(AxiomType.SUB_ANNOTATION_PROPERTY_OF)) {
for (OWLOntology ont : getOntologies()) {
Set<OWLAnnotationProperty> props = new TreeSet<OWLAnnotationProperty>();
for (OWLSubAnnotationPropertyOfAxiom ax : ont.getSubAnnotationPropertyOfAxioms(property)) {
if (isDisplayed(ax)) {
props.add(ax.getSuperProperty());
}
}
writeSection(SUB_PROPERTY_OF, props, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_DOMAIN)) {
for (OWLOntology ont : getOntologies()) {
Set<IRI> iris = new TreeSet<IRI>();
for (OWLAnnotationPropertyDomainAxiom ax :
ont.getAnnotationPropertyDomainAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getDomain());
}
}
writeSection(DOMAIN, iris, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_RANGE)) {
for (OWLOntology ont : getOntologies()) {
Set<IRI> iris = new TreeSet<IRI>();
for (OWLAnnotationPropertyRangeAxiom ax : ont.getAnnotationPropertyRangeAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getRange());
}
}
writeSection(RANGE, iris, ",", true, ont);
}
}
writeEntitySectionEnd(ANNOTATION_PROPERTY.toString());
return axioms;
}
public Set<OWLAnnotationAssertionAxiom> writeAnnotations(OWLAnnotationSubject subject) {
Set<OWLAnnotationAssertionAxiom> axioms = new HashSet<OWLAnnotationAssertionAxiom>();
if (!isFiltered(AxiomType.ANNOTATION_ASSERTION)) {
for (OWLOntology ontology : getOntologies()) {
SectionMap sectionMap = new SectionMap();
// Set<OWLAnnotation> annos = new TreeSet<OWLAnnotation>();
for (OWLAnnotationAssertionAxiom ax : ontology.getAnnotationAssertionAxioms(subject)) {
if (isDisplayed(ax)) {
axioms.add(ax);
sectionMap.add(ax.getAnnotation(), ax);
}
}
writeSection(ANNOTATIONS, sectionMap, ",", true, ontology);
}
}
return axioms;
}
@Override
protected Object getValueKey(Object value) {
OWLAnnotation annotation = null;
if (value instanceof OWLAnnotationAssertionAxiom) {
OWLAnnotationAssertionAxiom axiom = (OWLAnnotationAssertionAxiom) value;
if (axiom.getAnnotations().isEmpty()) {
return axiom.getAnnotation();
} else {
return axiom;
}
} else if (value instanceof AbstractAnnotationsList.AnnotationsListItem) {
annotation = ((AbstractAnnotationsList.AnnotationsListItem) value).getAnnotation();
} else if (value instanceof OWLAnnotation) {
annotation = (OWLAnnotation) value;
}
return annotation;
}
public String getShortForm(OWLEntity entity) {
for (OWLAnnotationProperty prop :
annotationProperties) { // visit the properties in order of preference
AnnotationLanguageFilter checker =
new AnnotationLanguageFilter(prop, preferredLanguageMap.get(prop));
for (OWLOntology ontology : ontologySetProvider.getOntologies()) {
for (OWLAnnotationAssertionAxiom ax : entity.getAnnotationAssertionAxioms(ontology)) {
ax.accept(checker);
}
}
if (checker.getMatch() != null) {
return getRendering(checker.getMatch());
}
}
return alternateShortFormProvider.getShortForm(entity);
}
public void retrieveSubObjectPropertyAxioms() {
// this method is to perform a dual operation; it shall retrieve all the declarative object
// properties categories' annotations,
// thus filling the objPropCategories Set, while parallelly will, for each category entry
// retrieve the object properties themselves
// and adding their entries in the objPropEntries Set.
Set<OWLSubObjectPropertyOfAxiom> tmpSet;
OWLObjectPropertyExpression tempDeclarativePropertyClass =
OWLFactory.getOWLObjectProperty(":DeclarativeProperty", topIxPrefixManager);
tmpSet =
topIxOnt.getObjectSubPropertyAxiomsForSuperProperty(
tempDeclarativePropertyClass); // OWLFactory.getOWLObjectProperty(IRI.create("http://www.semanticweb.org/ontologies/ptyxiaki_v0.6/2011/5/Ontology1308067064597.owl#DeclarativeProperty")));
Set<OWLSubObjectPropertyOfAxiom> tmpSet2;
Set<OWLAnnotationAssertionAxiom> tmpAnnSet1;
Set<OWLAnnotationAssertionAxiom> tmpAnnSet2;
// to become class variables.
for (OWLSubObjectPropertyOfAxiom sopAx : tmpSet) {
String tmpS = sopAx.getSubProperty().toString();
// categories...
tmpAnnSet1 =
topIxOnt.getAnnotationAssertionAxioms(
IRI.create(
tmpS.substring(
1, tmpS.indexOf('>')))); // this set only contains one annotation per entry
for (OWLAnnotationAssertionAxiom aaAx : tmpAnnSet1) {
String currentObjPropCatName =
aaAx.getValue().toString().substring(1, aaAx.getValue().toString().indexOf('^') - 1);
tmpSet2 =
topIxOnt.getObjectSubPropertyAxiomsForSuperProperty(
OWLFactory.getOWLObjectProperty(IRI.create(tmpS.substring(1, tmpS.length() - 1))));
for (OWLSubObjectPropertyOfAxiom sopAx2 : tmpSet2) {
String tmpS2 = sopAx2.getSubProperty().toString();
tmpAnnSet2 =
topIxOnt.getAnnotationAssertionAxioms(
IRI.create(tmpS2.substring(1, tmpS2.length() - 1)));
for (OWLAnnotationAssertionAxiom aaAx2 : tmpAnnSet2) {
String currentObjPropEntryName =
aaAx2
.getValue()
.toString()
.substring(1, aaAx2.getValue().toString().indexOf('^') - 1);
propEntryNameToPropCatName.put(currentObjPropEntryName, currentObjPropCatName);
propEntryNametoPropEntryIRI.put(
currentObjPropEntryName, tmpS2.substring(1, tmpS2.length() - 1));
}
}
}
}
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
handleObject(axiom);
axiom.getSubject().accept(this);
axiom.getAnnotation().accept(this);
}
public void visit(OWLAnnotationAssertionAxiom axiom) {
type = AXIOM_TYPE_INDEX_BASE + axiom.getAxiomType().getIndex();
}
public void visit(OWLAnnotationAssertionAxiom axiom) {
axiom.getProperty().accept(this);
axiom.getValue().accept(this);
processAxiomAnnotations(axiom);
}