public void populateMDSSegmentData(String SID) {
this.segmentID = SID;
String associatedOBR = "";
String labID = "";
int mdsOBXNum = 0;
try {
// Get the header info
MdsMSHDao mshDao = SpringUtils.getBean(MdsMSHDao.class);
for (Object[] o : mshDao.findMdsSementDataById(ConversionUtils.fromIntString(segmentID))) {
Date dateTime = (Date) o[0];
String controlId = (String) o[1];
String reportFormStatus = (String) o[2];
GregorianCalendar cal = new GregorianCalendar(Locale.ENGLISH);
SimpleDateFormat dateFormat = new SimpleDateFormat("dd-MMM-yyyy", Locale.ENGLISH);
cal.setTime(dateTime);
reportDate = dateFormat.format(cal.getTime());
reportStatus = (reportFormStatus.equals("1") ? "Final" : "Partial");
clientNo = controlId.split("-")[0];
accessionNo = controlId.split("-")[1];
}
// Get the lab ID
MdsZLBDao zlbDao = SpringUtils.getBean(MdsZLBDao.class);
MdsZLB zlb = zlbDao.find(ConversionUtils.fromIntString(this.segmentID));
if (zlb != null) {
labID = zlb.getLabId();
}
// Get the providers
MdsPV1Dao pvDao = SpringUtils.getBean(MdsPV1Dao.class);
MdsPV1 pv = pvDao.find(ConversionUtils.fromIntString(this.segmentID));
if (pv != null) {
providers = new ProviderData(pv.getRefDoctor(), pv.getConDoctor(), pv.getAdmDoctor());
} else {
providers = new ProviderData("", "", "");
}
// Get the lab status
ProviderLabRoutingDao plrDao = SpringUtils.getBean(ProviderLabRoutingDao.class);
for (Object[] o :
plrDao.findProviderAndLabRoutingByIdAndLabType(
ConversionUtils.fromIntString(this.segmentID), "MDS")) {
Provider provider = (Provider) o[0];
ProviderLabRoutingModel providerLabRouting = (ProviderLabRoutingModel) o[1];
statusArray.add(
new ReportStatus(
provider.getFirstName() + " " + provider.getLastName(),
provider.getProviderNo(),
descriptiveStatus(providerLabRouting.getStatus()),
providerLabRouting.getComment(),
ConversionUtils.toDateString(providerLabRouting.getTimestamp()),
this.segmentID));
}
// Get item descriptions and ranges and read into a hashtable
Hashtable<String, Mnemonics> mnemonics = new Hashtable<String, Mnemonics>();
MdsZMNDao zmnDao = SpringUtils.getBean(MdsZMNDao.class);
MdsZMN zmn = zmnDao.find(ConversionUtils.fromIntString(this.segmentID));
if (zmn != null) {
mnemonics.put(
zmn.getResultMnemonic(),
new Mnemonics(zmn.getReportName(), zmn.getUnits(), zmn.getReferenceRange()));
}
// Process the notes
Hashtable<Integer, ArrayList<String>> notes = new Hashtable<Integer, ArrayList<String>>();
MdsNTEDao nteDao = SpringUtils.getBean(MdsZMNDao.class);
MdsZMCDao zmcDao = SpringUtils.getBean(MdsZMCDao.class);
MdsNTE nte = nteDao.find(labID);
if (nte != null) {
if (notes.get(nte.getAssociatedOBX()) == null) {
notes.put(nte.getAssociatedOBX(), new ArrayList<String>());
}
if (nte.getSourceOfComment().equals("M")) {
((ArrayList<String>) notes.get(nte.getAssociatedOBX()))
.add(new String(nte.getComment().substring(3)));
} else {
if (nte.getSourceOfComment().equals("MC")) {
MdsZMC zmc =
zmcDao.findByIdAndSetId(
ConversionUtils.fromIntString(this.segmentID), nte.getComment().substring(1));
if (zmc == null) {
zmc =
zmcDao.findByIdAndSetId(
ConversionUtils.fromIntString(this.segmentID),
"%" + nte.getComment().substring(1, nte.getComment().length() - 1) + "%");
}
if (zmc != null) {
((ArrayList<String>) notes.get(nte.getAssociatedOBX())).add(zmc.getMessageCodeDesc());
}
} else {
logger.info(
"Found message note in unknown format. Format:" + nte.getSourceOfComment());
((ArrayList<String>) notes.get(nte.getAssociatedOBX())).add("Unknown note format!");
}
}
}
// Get the report section names
MdsZRGDao zrgDao = SpringUtils.getBean(MdsZRGDao.class);
for (Object[] o : zrgDao.findById(ConversionUtils.fromIntString(this.segmentID))) {
String groupDesc = (String) o[0];
String groupId = (String) o[1];
Integer groupIdCount = (Integer) o[2];
String groupHeading = (String) o[3];
if (groupIdCount == 1 && !groupHeading.equals("")) {
String[] rGH = {groupHeading};
headersArray.add(new Headers(groupDesc, groupId, rGH));
} else if (groupIdCount > 1) {
ArrayList<String> tempArray = new ArrayList<String>();
for (Object oo :
zrgDao.findReportGroupHeadingsById(
ConversionUtils.fromIntString(this.segmentID), groupId)) {
tempArray.add(String.valueOf(oo));
}
String[] reportGroupHeading = new String[tempArray.size()];
reportGroupHeading = tempArray.toArray(reportGroupHeading);
headersArray.add(new Headers(groupDesc, groupId, reportGroupHeading));
} else {
headersArray.add(new Headers(groupDesc, groupId, null));
}
}
// Create the data structures for each section, grouped by OBR
MdsOBRDao obrDao = SpringUtils.getBean(MdsOBRDao.class);
for (int i = 0; i < headersArray.size(); i++) {
List<String> resultCodes =
zmnDao.findResultCodes(
ConversionUtils.fromIntString(this.segmentID), headersArray.get(i).reportSequence);
for (Object[] ooo :
obrDao.findByIdAndResultCodes(
ConversionUtils.fromIntString(this.segmentID), resultCodes)) {
String associatedObr = (String) ooo[0];
Date observationDateTime = (Date) ooo[1];
(headersArray.get(i))
.groupedReportsArray.add(
new GroupedReports(
associatedObr,
ConversionUtils.toTimestampString(observationDateTime),
resultCodes));
}
}
MdsOBXDao obxDao = SpringUtils.getBean(MdsOBXDao.class);
// Get the actual results
Mnemonics thisOBXMnemonics = new Mnemonics();
for (int i = 0; i < (headersArray.size()); i++) {
for (int j = 0; j < (headersArray.get(i)).groupedReportsArray.size(); j++) {
associatedOBR = ((headersArray.get(i)).groupedReportsArray.get(j)).associatedOBR;
List<String> codes = ((headersArray.get(i)).groupedReportsArray.get(j)).codes;
for (MdsOBX obx :
obxDao.findByIdObrAndCodes(
ConversionUtils.fromIntString(this.segmentID), associatedOBR, codes)) {
mdsOBXNum = obx.getObxId();
thisOBXMnemonics.update(
(Mnemonics)
mnemonics.get(
obx.getObservationIdentifier()
.substring(1, obx.getObservationIdentifier().indexOf('^'))));
((headersArray.get(i)).groupedReportsArray.get(j))
.resultsArray.add(
new Results(
thisOBXMnemonics.reportName,
thisOBXMnemonics.referenceRange,
thisOBXMnemonics.units,
obx.getObservationValue(),
obx.getAbnormalFlags(),
obx.getObservationIdentifier(),
obx.getObservationResultStatus(),
(ArrayList<String>) notes.get(Integer.toString(mdsOBXNum)),
obx.getProducersId().substring(0, obx.getProducersId().indexOf('^'))));
}
}
}
} catch (Exception e) {
logger.error("In MDS Segment Data", e);
}
}
public ArrayList<LabResultData> populatePathnetResultsData(
String providerNo,
String demographicNo,
String patientFirstName,
String patientLastName,
String patientHealthNumber,
String status) {
if (providerNo == null) {
providerNo = "";
}
if (patientFirstName == null) {
patientFirstName = "";
}
if (patientLastName == null) {
patientLastName = "";
}
if (patientHealthNumber == null) {
patientHealthNumber = "";
}
if (status == null) {
status = "";
}
ArrayList<LabResultData> labResults = new ArrayList<LabResultData>();
try {
Hl7MshDao dao = SpringUtils.getBean(Hl7MshDao.class);
List<Object[]> pathnetResultsData;
if (demographicNo == null) {
pathnetResultsData =
dao.findPathnetResultsDataByPatientNameHinStatusAndProvider(
patientLastName + "%^" + patientFirstName + "%",
"%" + patientHealthNumber + "%",
"%" + status + "%",
providerNo.equals("") ? "%" : providerNo,
"BCP");
} else {
pathnetResultsData =
dao.findPathnetResultsDeomgraphicNo(
ConversionUtils.fromIntString(demographicNo), "BCP");
}
for (Object[] o : pathnetResultsData) {
Hl7Msh msh = (Hl7Msh) o[0];
Hl7Pid pid = (Hl7Pid) o[1];
Hl7Orc orc = (Hl7Orc) o[2];
ProviderLabRoutingModel p = (ProviderLabRoutingModel) o[4];
Long stat = (Long) o[5];
LabResultData lbData = new LabResultData(LabResultData.EXCELLERIS);
lbData.labType = LabResultData.EXCELLERIS;
lbData.segmentID = "" + pid.getMessageId();
if (demographicNo == null && !providerNo.equals("0")) {
lbData.acknowledgedStatus = p.getStatus();
} else {
lbData.acknowledgedStatus = "U";
}
lbData.accessionNumber = justGetAccessionNumber(orc.getFillerOrderNumber());
lbData.healthNumber = pid.getExternalId();
lbData.patientName = pid.getPatientName();
if (lbData.patientName != null) {
lbData.patientName = lbData.patientName.replaceAll("\\^", " ");
}
lbData.sex = pid.getSex();
lbData.resultStatus = "0"; // TODO
// solve lbData.resultStatus.add(oscar.Misc.getString(rs,"abnormalFlag"));
lbData.dateTime = ConversionUtils.toTimestampString(msh.getDateTime());
// priority
lbData.priority = "----";
lbData.requestingClient = justGetDocName(orc.getOrderingProvider());
lbData.reportStatus = "" + stat;
if (lbData.reportStatus != null && lbData.reportStatus.equals("F")) {
lbData.finalRes = true;
} else {
lbData.finalRes = false;
}
labResults.add(lbData);
}
} catch (Exception e) {
logger.error("exception in pathnetPopulate", e);
}
return labResults;
}