private void setupNaiveBlockingService(String entityName) {
log.warn(
"Was unable to load the blocking service configuration; using the naive blocking service as a fallback mechanism.");
BlockingService blockingService =
(BlockingService) Context.getApplicationContext().getBean(Constants.NAIVE_BLOCKING_SERVICE);
Context.registerCustomBlockingService(entityName, blockingService);
}
public List<RecordWeb> loadLinksFromRecord(EntityWeb entityModel, RecordWeb entity)
throws Exception {
log.debug("Received request to retrieve a list of entity record links.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
// loadRecordLinks without left and right Records
List<Record> records =
entityInstanceService.loadRecordLinksByRecordId(entityDef, entity.getRecordId());
List<RecordWeb> dtos = new java.util.ArrayList<RecordWeb>(records.size());
for (Record record : records) {
RecordWeb dto = ModelTransformer.mapToRecord(record, RecordWeb.class);
dtos.add(dto);
}
return dtos;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public void deleteCustomField(CustomField field) throws ApplicationException {
if (field == null
|| ConvertUtil.isNullOrEmpty(field.getEntityName())
|| ConvertUtil.isNullOrEmpty(field.getFieldName())) {
log.warn("The custom field to be deleted is invalid: " + field);
throw new ApplicationException("Unable to add invalid custom field definition.");
}
Entity entity = findLatestEntityVersionByName(field.getEntityName());
EntityAttribute attrib = null;
for (EntityAttribute item : entity.getAttributes()) {
if (item.getName().equalsIgnoreCase(field.getFieldName()) && item.getDateVoided() == null) {
attrib = item;
}
}
if (attrib == null) {
log.info("The user attempted to delete a custom field that does not exist.");
throw new ApplicationException("Unable to delete an unknown custom field definition.");
}
attrib.setDateVoided(new Date());
attrib.setUserVoidedBy(Context.getUserContext().getUser());
try {
entityDefinitionDao.updateEntity(entity);
// Generate a notification event to inform interested listeners via the lightweight mechanism
// that this event has occurred.
Context.notifyObserver(ObservationEventType.CUSTOM_FIELD_DELETE_EVENT, field);
} catch (DaoException e) {
log.error("Failed while deleting a custom field: " + e, e);
throw new ApplicationException("Failed while deleting the custom field: " + e.getMessage());
}
}
private void preloadCache() {
List<Entity> entities = loadEntities();
log.info("Pre-loaded configuration for " + entities.size() + " entities.");
Map<String, List<CustomField>> customFieldsListByEntityName =
new HashMap<String, List<CustomField>>();
Map<String, Map<String, CustomField>> customFieldsMapByEntityName =
new HashMap<String, Map<String, CustomField>>();
for (Entity entity : entities) {
List<CustomField> customFields = loadCustomFields(entity.getName());
customFieldsListByEntityName.put(entity.getName(), customFields);
log.info(
"Pre-loaded a list of "
+ customFields.size()
+ " custom fields for entity "
+ entity.getName());
Map<String, CustomField> customFieldMap = new HashMap<String, CustomField>();
for (CustomField field : customFields) {
customFieldMap.put(field.getFieldName(), field);
}
customFieldsMapByEntityName.put(entity.getName(), customFieldMap);
Context.getConfiguration()
.registerConfigurationEntry(
entity.getName(),
ConfigurationRegistry.CUSTOM_FIELD_LIST_BY_ENTITY_NAME_MAP,
customFieldsListByEntityName);
Context.getConfiguration()
.registerConfigurationEntry(
entity.getName(),
ConfigurationRegistry.CUSTOM_FIELD_MAP_BY_ENTITY_NAME_MAP,
customFieldsMapByEntityName);
}
}
public PersonIdentifier getGlobalIdentifierById(PersonIdentifier personIdentifier) {
ValidationService validationService = Context.getValidationService();
validationService.validate(personIdentifier);
GlobalIdentifier globalIdentifier = Context.getConfiguration().getGlobalIdentifier();
if (!globalIdentifier.isAssignGlobalIdentifier()) {
log.warn("The system is not configured to assign global identifiers.");
return null;
}
IdentifierDomain globalDomain = globalIdentifier.getIdentifierDomain();
// Check to see if the person already has a global identifier
Person person = personDao.getPersonById(personIdentifier);
if (person != null) {
for (PersonIdentifier identifier : person.getPersonIdentifiers()) {
IdentifierDomain identifierDomain = identifier.getIdentifierDomain();
if (identifierDomain != null && identifierDomain.equals(globalDomain)) {
if (log.isTraceEnabled()) {
log.trace("Person has a global identifier assigned: " + identifier);
}
return identifier;
}
}
}
return null;
}
public List<RecordWeb> findEntitiesByIdentifier(EntityWeb entityModel, IdentifierWeb identferWeb)
throws Exception {
log.debug(
"Received request to retrieve a list of entity instance records that match the entity specified as a parameter.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
org.openhie.openempi.model.Identifier identifier =
ModelTransformer.map(identferWeb, org.openhie.openempi.model.Identifier.class);
List<Record> records = entityInstanceService.findRecordsByIdentifier(entityDef, identifier);
List<RecordWeb> dtos = new java.util.ArrayList<RecordWeb>(records.size());
for (Record record : records) {
RecordWeb dto = ModelTransformer.mapToRecord(record, RecordWeb.class);
dtos.add(dto);
}
return dtos;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public void testGetPersonByIdQueryRemoteService() {
System.out.println(
"Transactional support for this test has rollback set to " + this.isDefaultRollback());
this.setDefaultRollback(true);
try {
org.openhie.openempi.service.PersonManagerService pms = Context.getPersonManagerService();
PersonUtils.createTestPersonTable(pms, TABLE_NAME, "", false, null, false, null, null);
RemotePersonServiceLocator remotePersonServiceLocator =
Context.getRemotePersonServiceLocator();
SecurityService securityService = remotePersonServiceLocator.getSecurityService(ipAddress);
String sessionKey = securityService.authenticate("admin", "admin");
System.out.println("Obtained a session key of " + sessionKey);
PersonQueryService personQueryService = remotePersonServiceLocator.getPersonQueryService();
Person p = personQueryService.getPersonById(sessionKey, TABLE_NAME, 1L);
if (p != null) {
System.out.println("Found person: " + p);
}
} catch (NamingException e) {
e.printStackTrace();
} catch (ApplicationException e) {
e.printStackTrace();
}
}
public List<RecordWeb> getMatchingEntities(EntityWeb entityModel, RecordWeb entity)
throws Exception {
log.debug(
"Received request to retrieve a list of entity instance records that match the entity specified as a parameter.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
// pass the entity definition model for formatting the Date search string
org.openhie.openempi.model.Record recordForMatch =
ModelTransformer.mapToRecordForSearch(entityDef, entity, Record.class);
List<Record> records =
entityInstanceService.findRecordsByAttributes(entityDef, recordForMatch);
List<RecordWeb> dtos = new java.util.ArrayList<RecordWeb>(records.size());
for (Record record : records) {
RecordWeb dto = ModelTransformer.mapToRecord(record, RecordWeb.class);
dtos.add(dto);
}
return dtos;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public Entity addEntity(Entity entity) throws ApplicationException {
if (entity == null) {
return null;
}
if (entity.getEntityVersionId() != null) {
throw new ApplicationException(
"This entity definition already exists so it can only be updated.");
}
validateNameUniqueness(entity);
try {
entity.setUserCreatedBy(Context.getUserContext().getUser());
Date dateCreated = new Date();
entity.setDateCreated(dateCreated);
for (EntityAttribute attribute : entity.getAttributes()) {
attribute.setDateCreated(dateCreated);
attribute.setUserCreatedBy(Context.getUserContext().getUser());
attribute.setEntity(entity);
}
entityDefinitionDao.addEntity(entity);
addToCache(entity);
Context.notifyObserver(ObservationEventType.ENTITY_ADD_EVENT, entity);
return entity;
} catch (DaoException e) {
throw new ApplicationException(e.getMessage());
}
}
public RecordLinkWeb loadRecordLinks(
EntityWeb entityModel, Long leftRecordId, Long rightRecordId, String state) throws Exception {
log.debug("Received request to retrieve a list of entity record links.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
List<RecordLink> records =
entityInstanceService.loadRecordLinks(
entityDef, rightRecordId, RecordLinkState.fromString(state));
for (RecordLink record : records) {
// loadRecordLinks with left and right Records
RecordLink recordlLink =
entityInstanceService.loadRecordLink(entityDef, record.getRecordLinkId());
if (recordlLink.getLeftRecord().getRecordId() == leftRecordId
|| recordlLink.getRightRecord().getRecordId() == leftRecordId) {
RecordLinkWeb recordlLinkWeb =
ModelTransformer.mapToRecordLink(recordlLink, RecordLinkWeb.class, true);
return recordlLinkWeb;
}
}
return null;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public List<RecordLinkWeb> loadRecordLinks(
EntityWeb entityModel, String state, int firstResult, int maxResults) throws Exception {
log.debug("Received request to retrieve a list of entity record links.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
List<RecordLink> records =
entityInstanceService.loadRecordLinks(
entityDef, RecordLinkState.fromString(state), firstResult, maxResults);
List<RecordLinkWeb> dtos = new java.util.ArrayList<RecordLinkWeb>(records.size());
for (RecordLink record : records) {
// loadRecordLinks without left and right Records
RecordLinkWeb dto = ModelTransformer.mapToRecordLink(record, RecordLinkWeb.class, false);
dtos.add(dto);
}
return dtos;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public RecordLinkWeb updateRecordLink(EntityWeb entityModel, RecordLinkWeb linkPair)
throws Exception {
log.debug("Received request to updaty an entity record link.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
RecordManagerService entityInstanceManagerService = Context.getRecordManagerService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
RecordLink recordLink = ModelTransformer.mapToRecordLink(linkPair, RecordLink.class);
RecordLink record =
entityInstanceService.loadRecordLink(entityDef, recordLink.getRecordLinkId());
record.setState(recordLink.getState());
record = entityInstanceManagerService.updateRecordLink(record);
RecordLinkWeb recordWeb = ModelTransformer.mapToRecordLink(record, RecordLinkWeb.class, true);
return recordWeb;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
private BlockingService processBlockingConfiguration(MpiConfigDocument configuration) {
checkConfiguration(configuration);
if (configuration.getMpiConfig().getBlockingConfigurationArray() == null) {
return null;
}
int count = configuration.getMpiConfig().getBlockingConfigurationArray().length;
BlockingService blockingService = null;
for (int i = 0; i < count; i++) {
BlockingConfigurationType obj = configuration.getMpiConfig().getBlockingConfigurationArray(i);
if (obj == null) {
log.warn("No blocking service configuration has been specified.");
return null;
}
log.debug("Object is of type: " + obj.getDomNode().getNamespaceURI());
String namespaceUriStr = obj.getDomNode().getNamespaceURI();
URI namespaceURI = getNamespaceURI(namespaceUriStr);
String resourcePath = generateComponentResourcePath(namespaceURI);
Component component = loadAndRegisterComponentFromNamespaceUri(resourcePath);
String configurationLoaderBean = getExtensionBeanNameFromComponent(component);
ConfigurationLoader loader =
(ConfigurationLoader) Context.getApplicationContext().getBean(configurationLoaderBean);
loader.loadAndRegisterComponentConfiguration(this, obj);
Component.Extension extension =
component.getExtensionByExtensionInterface(ExtensionInterface.IMPLEMENTATION);
if (extension == null) {
log.error(
"Encountered a custom blocking component with no implementation extension: "
+ component);
throw new InitializationException(
"Unable to locate an implementation component for custom blocking component "
+ component.getName());
}
log.debug(
"Registering implementation of blocking component named "
+ extension.getName()
+ " and implementation key "
+ extension.getImplementationKey());
blockingService =
(BlockingService)
Context.getApplicationContext().getBean(extension.getImplementationKey());
String entity = loader.getComponentEntity();
log.info("Registering blocking service " + blockingService + " for entity " + entity);
Context.registerCustomBlockingService(entity, blockingService);
}
return blockingService;
}
public Entity updateEntity(Entity entity) throws ApplicationException {
if (entity == null) {
return entity;
}
if (entity.getEntityVersionId() == null) {
throw new ApplicationException(
"An entity definition must first be created before it is updated.");
}
try {
Date currentDate = new Date();
entity.setDateChanged(currentDate);
entity.setUserChangedBy(Context.getUserContext().getUser());
for (EntityAttribute attrib : entity.getAttributes()) {
if (attrib.getDateCreated() == null) {
attrib.setDateCreated(currentDate);
attrib.setUserCreatedBy(Context.getUserContext().getUser());
// attrib.setEntity(entity);
}
attrib.setEntity(entity);
}
// Mark deletion attributes
handleAttributeUpdates(entity);
// remove validations for marked attribute
for (EntityAttribute attrib : entity.getAttributes()) {
if (attrib.getUserVoidedBy() != null) {
// remove validations
List<EntityAttributeValidation> existingValidations =
loadEntityAttributeValidations(attrib);
for (EntityAttributeValidation validation : existingValidations) {
deleteEntityAttributeValidation(validation);
}
}
}
Entity updatedEntity = entityDefinitionDao.updateEntity(entity);
updatedEntity = entityDefinitionDao.loadEntity(entity.getEntityVersionId());
addToCache(updatedEntity);
Context.notifyObserver(ObservationEventType.ENTITY_ATTRIBUTE_UPDATE_EVENT, entity);
return updatedEntity;
} catch (DaoException e) {
throw new ApplicationException(e.getMessage());
}
}
@Override
public RecordListWeb getEntityRecordsBySearch(RecordSearchCriteriaWeb searchCriteria)
throws Exception {
log.debug("Get Entity Records By Search");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
EntityWeb entityModel = searchCriteria.getEntityModel();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
RecordWeb entity = searchCriteria.getRecord();
int offset = searchCriteria.getFirstResult();
int pageSize = searchCriteria.getMaxResults();
org.openhie.openempi.model.Record recordForMatch =
ModelTransformer.mapToRecordForSearch(entityDef, entity, Record.class);
// Get total count
Long totalCount = searchCriteria.getTotalCount();
if (totalCount == 0) {
totalCount = entityInstanceService.getRecordCount(entityDef, recordForMatch);
}
// get List of Record
List<Record> records =
entityInstanceService.findRecordsByAttributes(
entityDef, recordForMatch, offset, pageSize);
List<RecordWeb> dtos = new java.util.ArrayList<RecordWeb>(records.size());
for (Record record : records) {
RecordWeb dto = ModelTransformer.mapToRecord(record, RecordWeb.class);
dtos.add(dto);
}
RecordListWeb recordList = new RecordListWeb();
recordList.setTotalCount(totalCount);
recordList.setRecords(dtos);
return recordList;
} catch (Exception e) {
log.error("Failed while trying to get audit events: " + e, e);
}
return null;
}
@Override
public RecordLinksListWeb loadRecordLinksPaged(RecordSearchCriteriaWeb searchCriteria)
throws Exception {
log.debug("Get Record Links");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
EntityWeb entityModel = searchCriteria.getEntityModel();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
int offset = searchCriteria.getFirstResult();
int pageSize = searchCriteria.getMaxResults();
String state = searchCriteria.getSearchMode().substring(0, 1);
// Get total count
Long totalCount = searchCriteria.getTotalCount();
if (totalCount == 0) {
totalCount =
entityInstanceService.getRecordLinkCount(entityDef, RecordLinkState.fromString(state));
}
// get List of Record
List<RecordLink> recordLinks =
entityInstanceService.loadRecordLinks(
entityDef, RecordLinkState.fromString(state), offset, pageSize);
List<RecordLinkWeb> dtos = new java.util.ArrayList<RecordLinkWeb>(recordLinks.size());
for (RecordLink record : recordLinks) {
// loadRecordLinks without left and right Records
RecordLinkWeb dto = ModelTransformer.mapToRecordLink(record, RecordLinkWeb.class, false);
dtos.add(dto);
}
RecordLinksListWeb recordList = new RecordLinksListWeb();
recordList.setTotalCount(totalCount);
recordList.setRecordLinks(dtos);
return recordList;
} catch (Exception e) {
log.error("Failed while trying to get audit events: " + e, e);
}
return null;
}
private GlobalIdentifier processGlobalIdentifier(MpiConfigDocument configuration) {
globalIdentifier = new GlobalIdentifier();
if (!configuration.getMpiConfig().isSetGlobalIdentifier()) {
globalIdentifier.setAssignGlobalIdentifier(false);
return globalIdentifier;
}
globalIdentifier.setAssignGlobalIdentifier(
configuration.getMpiConfig().getGlobalIdentifier().getAssignGlobalIdentifier());
globalIdentifier.setIdentifierDomainName(
configuration.getMpiConfig().getGlobalIdentifier().getIdentifierDomainName());
globalIdentifier.setIdentifierDomainDescription(
configuration.getMpiConfig().getGlobalIdentifier().getIdentifierDomainDescription());
globalIdentifier.setNamespaceIdentifier(
configuration.getMpiConfig().getGlobalIdentifier().getNamespaceIdentifier());
globalIdentifier.setUniversalIdentifier(
configuration.getMpiConfig().getGlobalIdentifier().getUniversalIdentifier());
globalIdentifier.setUniversalIdentifierType(
configuration.getMpiConfig().getGlobalIdentifier().getUniversalIdentifierType());
IdentifierDomain domain =
Context.getPersonQueryService()
.findIdentifierDomainByName(globalIdentifier.getIdentifierDomainName());
if (domain == null) {
log.error(
"Global identifier domain not found; correct system configuration and start system again.");
System.exit(-1);
}
globalIdentifier.setIdentifierDomain(domain);
return globalIdentifier;
}
public ContainerRequest filter(ContainerRequest request) {
log.debug("Url invoked is: " + uriInfo.getPath());
// We need to let the caller get through to the authentication call
if (uriInfo.getPath() != null
&& (uriInfo.getPath().equalsIgnoreCase("security-resource/authenticate")
|| uriInfo.getPath().startsWith("records")
|| uriInfo.getPath().startsWith("record-links")
|| uriInfo.getPath().startsWith("entities")
|| uriInfo.getPath().startsWith("entity-attributes")
|| uriInfo.getPath().startsWith("identifier-domains")
|| uriInfo.getPath().equalsIgnoreCase("application.wadl"))) {
log.debug("Request permitted due to URI being present in the exclusion list.");
return request;
}
String sessionKey = request.getHeaderValue(OPENEMPI_SESSION_KEY_HEADER);
if (sessionKey != null && sessionKey.length() > 0) {
User user = org.openhie.openempi.context.Context.authenticate(sessionKey);
if (user == null) {
throw new WebApplicationException(Response.Status.UNAUTHORIZED);
}
return request;
}
throw new WebApplicationException(Response.Status.UNAUTHORIZED);
}
public Object lookupConfigurationEntry(String entityName, String key) {
if (entityName == null) {
log.info("Looking up configuration entry with key " + key + " in default registry.");
return defaultConfigurationRegistry.get(key);
}
return Context.lookupConfigurationEntry(entityName, key);
}
public Person findPersonById(PersonIdentifier personIdentifier) {
ValidationService validationService = Context.getValidationService();
validationService.validate(personIdentifier);
return personDao.getPersonById(personIdentifier);
}
public void testDataProfileView() {
DataProfileService service = Context.getDataProfileService();
List<DataProfileAttribute> dataList = service.getDataProfileAttributes(0);
assertNotNull("Did not find any data profile attribute data.", dataList);
assertTrue("The list of data profile attribute data is empty.", dataList.size() > 0);
DataProfileAttribute givenNameAttribute = null;
for (DataProfileAttribute attrib : dataList) {
log.debug(attrib);
if (attrib.getAttributeName() != null
&& attrib.getAttributeName().equalsIgnoreCase("givenName")) {
givenNameAttribute = attrib;
}
}
if (givenNameAttribute != null) {
List<DataProfileAttributeValue> values =
service.getTopDataProfileAttributeValues(givenNameAttribute.getAttributeId(), 10);
assertNotNull("Did not find any data profile attribute data values.", values);
assertTrue("The list of data profile attribute data values is empty.", values.size() > 0);
for (DataProfileAttributeValue value : values) {
log.debug(
"The value ["
+ value.getAttributeValue()
+ "] has a frequence of "
+ value.getFrequency());
}
}
}
public void testFileParsing() {
try {
JAXBContext jc = JAXBContext.newInstance(FileLoaderMap.class);
Unmarshaller u = jc.createUnmarshaller();
File dir = new File(Context.getOpenEmpiHome() + "/conf");
File file = new File(dir, "file-loader-map.xml");
FileLoaderMap fileMap = (FileLoaderMap) u.unmarshal(new FileInputStream(file));
log.debug("File will be parsed using the delimeter: " + fileMap.getDelimeter());
for (int i = 0; i < fileMap.getFields().getField().size(); i++) {
FieldType field = fileMap.getFields().getField().get(i);
if (field.isOneToMany()) {
log.debug(
"Field will be decomposed into subfields using delimeter: " + field.getDelimeter());
for (FieldType subfield : field.getSubfields().getField()) {
log.debug(
"Will import field "
+ subfield.getFieldName()
+ " which should appear at column "
+ i);
}
} else {
log.debug(
"Will import field " + field.getFieldName() + " which should appear at column " + i);
}
}
log.debug("Finished processing file loader map");
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
public IdentifierDomainAttribute getIdentifierDomainAttribute(
IdentifierDomain identifierDomain, String attributeName) {
ValidationService validationService = Context.getValidationService();
validationService.validate(identifierDomain);
return personDao.getIdentifierDomainAttribute(identifierDomain, attributeName);
}
public List<Person> findPersonsById(PersonIdentifier personIdentifier) {
ValidationService validationService = Context.getValidationService();
validationService.validate(personIdentifier);
List<Person> persons = personDao.getPersonsByIdentifier(personIdentifier);
return persons;
}
public List<IdentifierDomainAttribute> getIdentifierDomainAttributes(
IdentifierDomain identifierDomain) {
ValidationService validationService = Context.getValidationService();
validationService.validate(identifierDomain);
return personDao.getIdentifierDomainAttributes(identifierDomain);
}
private void configureLoggingEnvironment() {
String openEmpiHome = Context.getOpenEmpiHome();
if (openEmpiHome != null && openEmpiHome.length() > 0) {
String loggingConfigurationFile = openEmpiHome + "/conf/log4j.properties";
PropertyConfigurator.configure(loggingConfigurationFile);
log.info("Set the logging configuration file to " + loggingConfigurationFile);
}
}
public void testInitialization() {
PersonManagerService service = Context.getPersonManagerService();
try {
service.initializeRepository();
} catch (ApplicationException e) {
log.error("Failed while initializing the repository: " + e, e);
}
}
public RecordListWeb findEntitiesByIdentifier(RecordSearchCriteriaWeb searchCriteria)
throws Exception {
log.debug("Received entity records by identifier.");
authenticateCaller();
try {
RecordQueryService entityInstanceService = Context.getRecordQueryService();
EntityDefinitionManagerService entityDefService = Context.getEntityDefinitionManagerService();
EntityWeb entityModel = searchCriteria.getEntityModel();
Entity entityDef = entityDefService.loadEntity(entityModel.getEntityVersionId());
IdentifierWeb identifierWeb = searchCriteria.getIdentifier();
int offset = searchCriteria.getFirstResult();
int pageSize = searchCriteria.getMaxResults();
org.openhie.openempi.model.Identifier identifier =
ModelTransformer.map(identifierWeb, org.openhie.openempi.model.Identifier.class);
// Get total count
Long totalCount = searchCriteria.getTotalCount();
if (totalCount == 0) {
totalCount = entityInstanceService.getRecordCount(entityDef, identifier);
}
// get List of Record
List<Record> records =
entityInstanceService.findRecordsByIdentifier(entityDef, identifier, offset, pageSize);
List<RecordWeb> dtos = new java.util.ArrayList<RecordWeb>(records.size());
for (Record record : records) {
RecordWeb dto = ModelTransformer.mapToRecord(record, RecordWeb.class);
dtos.add(dto);
}
RecordListWeb recordList = new RecordListWeb();
recordList.setTotalCount(totalCount);
recordList.setRecords(dtos);
return recordList;
} catch (Throwable t) {
log.error("Failed to execute: " + t.getMessage(), t);
throw new RuntimeException(t);
}
}
public void shutdown() {
if (loader != null) {
loader.shutdown();
}
if (entityLoaderMgr != null) {
entityLoaderMgr.shutdownConnection();
}
Context.shutdown();
}
public IdentifierDomain findIdentifierDomainByName(String identifierDomainName) {
ValidationService validationService = Context.getValidationService();
validationService.validate(identifierDomainName);
if (identifierDomainName == null || identifierDomainName.length() == 0) {
return null;
}
return personDao.findIdentifierDomainByName(identifierDomainName);
}
