/**
* For use by the acquisition panel code (to update offset setting) Do not get into the internals
* of this plugin without relying on ASIdiSPIM.api
*
* @param side side for which the setup panel is desired)
* @return desired instance of the setup Panel (either A or B)
*/
public SetupPanel getSetupPanel(Devices.Sides side) {
if (side.equals(Devices.Sides.A)) return setupPanelA_;
else if (side.equals(Devices.Sides.B)) return setupPanelB_;
// this can not be reached unless someone adds more sides than A and B
return null;
}
public SetupPanel(
ScriptInterface gui,
Devices devices,
Properties props,
Joystick joystick,
final Devices.Sides side,
Positions positions,
Cameras cameras,
Prefs prefs,
StagePositionUpdater posUpdater,
AutofocusUtils autofocus) {
super(
MyStrings.PanelNames.SETUP.toString() + side.toString(),
new MigLayout("", "[center]8[center]", "[]16[]16[]"));
devices_ = devices;
props_ = props;
joystick_ = joystick;
positions_ = positions;
cameras_ = cameras;
autofocus_ = autofocus;
prefs_ = prefs;
posUpdater_ = posUpdater;
gui_ = gui;
core_ = gui_.getMMCore();
PanelUtils pu = new PanelUtils(prefs_, props_, devices);
final SetupPanel setupPanel = this;
piezoImagingDeviceKey_ = Devices.getSideSpecificKey(Devices.Keys.PIEZOA, side);
piezoIlluminationDeviceKey_ =
Devices.getSideSpecificKey(Devices.Keys.PIEZOA, Devices.getOppositeSide(side));
micromirrorDeviceKey_ = Devices.getSideSpecificKey(Devices.Keys.GALVOA, side);
sheetStartPositionLabel_ =
new StoredFloatLabel(
panelName_,
Properties.Keys.PLUGIN_SHEET_START_POS.toString(),
-0.5f,
prefs_,
" \u00B0");
sliceStartPos_ = sheetStartPositionLabel_.getFloat();
sheetStopPositionLabel_ =
new StoredFloatLabel(
panelName_, Properties.Keys.PLUGIN_SHEET_END_POS.toString(), 0.5f, prefs_, " \u00B0");
sliceStopPos_ = sheetStopPositionLabel_.getFloat();
imagingPiezoStartPositionLabel_ =
new StoredFloatLabel(
panelName_,
Properties.Keys.PLUGIN_PIEZO_START_POS.toString(),
-50f,
prefs_,
" \u00B5" + "m");
imagingPiezoStartPos_ = imagingPiezoStartPositionLabel_.getFloat();
imagingPiezoStopPositionLabel_ =
new StoredFloatLabel(
panelName_,
Properties.Keys.PLUGIN_PIEZO_END_POS.toString(),
50f,
prefs_,
" \u00B5" + "m");
imagingPiezoStopPos_ = imagingPiezoStopPositionLabel_.getFloat();
JButton tmp_but;
JPanel calibrationPanel =
new JPanel(
new MigLayout(
"", "[right]2[center]2[right]4[left]8[center]8[center]8[center]", "[]8[]"));
offsetField_ =
pu.makeFloatEntryField(
panelName_, Properties.Keys.PLUGIN_OFFSET_PIEZO_SHEET.toString(), 0, 5);
rateField_ =
pu.makeFloatEntryField(
panelName_, Properties.Keys.PLUGIN_RATE_PIEZO_SHEET.toString(), 100, 5);
piezoDeltaField_ =
pu.makeFloatEntryField(
panelName_, Properties.Keys.PLUGIN_PIEZO_SHEET_INCREMENT.toString(), 5, 3);
piezoDeltaField_.setToolTipText("Piezo increment used by up/down arrow buttons");
JButton upButton = new JButton();
upButton.setIcon(SwingResourceManager.getIcon(MMStudio.class, "icons/arrow_up.png"));
upButton.setText("");
upButton.setToolTipText("Move slice and piezo up together");
upButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
stepPiezoAndGalvo(1.);
}
});
JButton downButton = new JButton();
downButton.setIcon(SwingResourceManager.getIcon(MMStudio.class, "icons/arrow_down.png"));
downButton.setText("");
downButton.setToolTipText("Move slice and piezo down together");
downButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
stepPiezoAndGalvo(-1.);
}
});
calibrationPanel.add(new JLabel("Piezo/Slice Calibration"), "span 5, center");
calibrationPanel.add(
new JSeparator(SwingConstants.VERTICAL), "span 1 3, growy, shrinkx, center");
calibrationPanel.add(new JLabel("Step"), "wrap");
calibrationPanel.add(new JLabel("Slope: "));
calibrationPanel.add(rateField_, "span 2, right");
// TODO make calibration be in degrees instead of um
// calibrationPanel.add(new JLabel("\u00B0/\u00B5m"));
calibrationPanel.add(new JLabel("\u00B5m/\u00B0"));
tmp_but = new JButton("Update");
tmp_but.setMargin(new Insets(4, 8, 4, 8));
tmp_but.setToolTipText(
"Computes piezo vs. slice slope and offset from start and end positions");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
updateCalibrationSlopeAndOffset();
}
});
tmp_but.setBackground(Color.green);
calibrationPanel.add(tmp_but);
calibrationPanel.add(upButton, "wrap");
calibrationPanel.add(new JLabel("Offset: "));
calibrationPanel.add(offsetField_, "span 2, right");
// calibrationPanel.add(new JLabel("\u00B0"));
calibrationPanel.add(new JLabel("\u00B5m"));
tmp_but = new JButton("Update");
tmp_but.setMargin(new Insets(4, 8, 4, 8));
tmp_but.setToolTipText("Adjusts piezo vs. slice offset from current position");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
updateCalibrationOffset();
}
});
tmp_but.setBackground(Color.green);
calibrationPanel.add(tmp_but);
calibrationPanel.add(downButton, "wrap");
calibrationPanel.add(new JLabel("Step size: "), "span 2, left");
calibrationPanel.add(piezoDeltaField_);
calibrationPanel.add(new JLabel("\u00B5m"));
tmp_but = new JButton("Focus");
tmp_but.setMargin(new Insets(4, 8, 4, 8));
tmp_but.setToolTipText("Autofocus at current piezo position");
tmp_but.setBackground(Color.green);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
autofocus_.runFocus(
setupPanel,
side,
true,
ASIdiSPIM.getFrame().getAcquisitionPanel().getSliceTiming(),
true);
}
});
calibrationPanel.add(tmp_but, "center, span 3, wrap");
// start 2-point calibration frame
// this frame is separate from main plugin window
slopeCalibrationFrame_ = new MMFrame();
slopeCalibrationFrame_.setTitle("Slope and Offset Calibration");
slopeCalibrationFrame_.loadPosition(100, 100);
JPanel slopeCalibrationPanel =
new JPanel(new MigLayout("", "[center]8[center]8[center]8[center]8[center]", "[]8[]"));
// TODO improve interface with multi-page UI and forward/back buttons
// e.g. \mmstudio\src\org\micromanager\conf2\ConfiguratorDlg2.java
slopeCalibrationPanel.add(new JLabel("Calibration Start Position"), "span 3, center");
slopeCalibrationPanel.add(new JLabel("Calibration End Position"), "span 3, center, wrap");
slopeCalibrationPanel.add(sheetStartPositionLabel_);
// Go to start button
tmp_but = new JButton("Go to");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
positions_.setPosition(micromirrorDeviceKey_, Directions.Y, sliceStartPos_, true);
positions_.setPosition(piezoImagingDeviceKey_, imagingPiezoStartPos_, true);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slopeCalibrationPanel.add(tmp_but, "");
slopeCalibrationPanel.add(new JSeparator(SwingConstants.VERTICAL), "spany 2, growy");
slopeCalibrationPanel.add(sheetStopPositionLabel_);
// go to end button
tmp_but = new JButton("Go to");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
positions_.setPosition(micromirrorDeviceKey_, Directions.Y, sliceStopPos_, true);
positions_.setPosition(piezoImagingDeviceKey_, imagingPiezoStopPos_, true);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slopeCalibrationPanel.add(tmp_but, "wrap");
slopeCalibrationPanel.add(imagingPiezoStartPositionLabel_);
tmp_but = new JButton("Set");
tmp_but.setToolTipText(
"Saves calibration start position for imaging piezo and scanner slice (should be focused)");
tmp_but.setBackground(Color.red);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
// bypass cached positions in positions_ in case they aren't current
sliceStartPos_ = positions_.getUpdatedPosition(micromirrorDeviceKey_, Directions.Y);
sheetStartPositionLabel_.setFloat((float) sliceStartPos_);
imagingPiezoStartPos_ = positions_.getUpdatedPosition(piezoImagingDeviceKey_);
imagingPiezoStartPositionLabel_.setFloat((float) imagingPiezoStartPos_);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slopeCalibrationPanel.add(tmp_but);
slopeCalibrationPanel.add(imagingPiezoStopPositionLabel_);
tmp_but = new JButton("Set");
tmp_but.setToolTipText(
"Saves calibration end position for imaging piezo and scanner slice (should be focused)");
tmp_but.setBackground(Color.red);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
// bypass cached positions in positions_ in case they aren't current
sliceStopPos_ = positions_.getUpdatedPosition(micromirrorDeviceKey_, Directions.Y);
sheetStopPositionLabel_.setFloat((float) sliceStopPos_);
imagingPiezoStopPos_ = positions_.getUpdatedPosition(piezoImagingDeviceKey_);
imagingPiezoStopPositionLabel_.setFloat((float) imagingPiezoStopPos_);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slopeCalibrationPanel.add(tmp_but, "wrap");
slopeCalibrationPanel.add(
new JSeparator(SwingConstants.HORIZONTAL), "span 5, growx, shrinky, wrap");
tmp_but = new JButton("Use these!");
tmp_but.setBackground(Color.green);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
double rate =
(imagingPiezoStopPos_ - imagingPiezoStartPos_) / (sliceStopPos_ - sliceStartPos_);
rateField_.setValue((Double) rate);
double offset =
(imagingPiezoStopPos_ + imagingPiezoStartPos_) / 2
- (rate * ((sliceStopPos_ + sliceStartPos_) / 2));
offsetField_.setValue((Double) offset);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
slopeCalibrationFrame_.setVisible(false);
}
});
slopeCalibrationPanel.add(tmp_but, "span 5, split 3");
tmp_but = new JButton("Focus");
tmp_but.setToolTipText("Autofocus at current piezo position");
tmp_but.setBackground(Color.green);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
autofocus_.runFocus(
setupPanel,
side,
true,
ASIdiSPIM.getFrame().getAcquisitionPanel().getSliceTiming(),
true);
}
});
slopeCalibrationPanel.add(tmp_but);
tmp_but = new JButton("Cancel");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
slopeCalibrationFrame_.setVisible(false);
}
});
slopeCalibrationPanel.add(tmp_but, "wrap");
slopeCalibrationFrame_.add(slopeCalibrationPanel);
slopeCalibrationFrame_.pack();
slopeCalibrationFrame_.setResizable(false);
final int positionWidth = 50;
final int labelWidth = 80;
JPanel slicePanel =
new JPanel(
new MigLayout(
"",
"[" + labelWidth + "px!,right]8[" + positionWidth + "px!,center]8[center]8[center]",
"[]8[]"));
JLabel tmp_lbl = new JLabel("Imaging center: ", JLabel.RIGHT);
tmp_lbl.setMaximumSize(new Dimension(labelWidth, 20));
tmp_lbl.setMinimumSize(new Dimension(labelWidth, 20));
slicePanel.add(tmp_lbl);
imagingCenterPosLabel_ =
new StoredFloatLabel(
panelName_,
Properties.Keys.PLUGIN_PIEZO_CENTER_POS.toString(),
0,
prefs_,
" \u00B5" + "m");
imagingCenterPosLabel_.setMaximumSize(new Dimension(positionWidth, 20));
imagingCenterPosLabel_.setMinimumSize(new Dimension(positionWidth, 20));
slicePanel.add(imagingCenterPosLabel_);
// initialize the center position variable
imagingCenterPos_ =
prefs_.getFloat(
MyStrings.PanelNames.SETUP.toString() + side.toString(),
Properties.Keys.PLUGIN_PIEZO_CENTER_POS,
0);
tmp_but = new JButton("Go");
tmp_but.setToolTipText("Moves piezo to specified center and also slice");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
centerPiezoAndGalvo();
}
});
slicePanel.add(tmp_but);
tmp_but = new JButton("Set");
tmp_but.setToolTipText("Sets piezo center position for acquisition");
tmp_but.setBackground(Color.red);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
try {
imagingCenterPos_ = positions_.getUpdatedPosition(piezoImagingDeviceKey_);
imagingCenterPosLabel_.setFloat((float) imagingCenterPos_);
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slicePanel.add(tmp_but, "wrap");
slicePanel.add(new JLabel("XY center: "));
slicePanel.add(new JLabel("")); // TODO update this label with current value
tmp_but = new JButton("Go");
tmp_but.setToolTipText("Moves XY stage to specified center");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
// TODO replace with positions_ call to 2D position set (need to implement still)
try {
core_.setXYPosition(xyCenterPos_.x, xyCenterPos_.y);
} catch (Exception ex) {
ReportingUtils.showError(ex);
}
}
});
slicePanel.add(tmp_but);
tmp_but = new JButton("Set");
tmp_but.setToolTipText("Sets XY center position for acquisition");
tmp_but.setBackground(Color.red);
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
// TODO replace with positions_ call to 2D position set (need to implement still)
try {
xyCenterPos_ =
core_.getXYStagePosition(devices_.getMMDeviceException(Devices.Keys.XYSTAGE));
} catch (Exception ex) {
MyDialogUtils.showError(ex);
}
}
});
slicePanel.add(tmp_but, "wrap");
slicePanel.add(new JSeparator(SwingConstants.HORIZONTAL), "span 5, growx, shrinky, wrap");
slicePanel.add(new JLabel("Slice position:"));
sheetPositionLabel_ = new JLabel("");
slicePanel.add(sheetPositionLabel_);
slicePanel.add(pu.makeSetPositionField(micromirrorDeviceKey_, Directions.Y, positions_));
tmp_but = new JButton("Go to 0");
tmp_but.setMargin(new Insets(4, 4, 4, 4));
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
positions_.setPosition(micromirrorDeviceKey_, Directions.Y, 0.0, true);
}
});
slicePanel.add(tmp_but, "wrap");
slicePanel.add(new JLabel("Imaging piezo:"));
imagingPiezoPositionLabel_ = new JLabel("");
slicePanel.add(imagingPiezoPositionLabel_);
slicePanel.add(pu.makeSetPositionField(piezoImagingDeviceKey_, Directions.NONE, positions_));
tmp_but = new JButton("Go to 0");
tmp_but.setMargin(new Insets(4, 4, 4, 4));
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
positions_.setPosition(piezoImagingDeviceKey_, 0.0, true);
}
});
slicePanel.add(tmp_but, "wrap");
// Create sheet controls
JPanel sheetPanel =
new JPanel(
new MigLayout(
"",
"[" + labelWidth + "px!,right]8[" + positionWidth + "px!,center]8[center]8[center]",
"[]8[]8[]"));
tmp_lbl = new JLabel("Illum. piezo:", JLabel.RIGHT);
tmp_lbl.setMaximumSize(new Dimension(labelWidth, 20));
tmp_lbl.setMinimumSize(new Dimension(labelWidth, 20));
sheetPanel.add(tmp_lbl, "center");
illuminationPiezoPositionLabel_ = new JLabel("");
illuminationPiezoPositionLabel_.setMaximumSize(new Dimension(positionWidth, 20));
illuminationPiezoPositionLabel_.setMinimumSize(new Dimension(positionWidth, 20));
sheetPanel.add(illuminationPiezoPositionLabel_);
sheetPanel.add(
pu.makeSetPositionField(piezoIlluminationDeviceKey_, Directions.NONE, positions_));
tmp_but = new JButton("Set home");
tmp_but.setMargin(new Insets(4, 4, 4, 4));
tmp_but.setToolTipText("During SPIM, illumination piezo is moved to home position");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (devices_.isValidMMDevice(piezoIlluminationDeviceKey_)) {
props_.setPropValue(
piezoIlluminationDeviceKey_,
Properties.Keys.SET_HOME_HERE,
Properties.Values.DO_IT);
}
}
});
sheetPanel.add(tmp_but);
tmp_but = new JButton("Go home");
tmp_but.setMargin(new Insets(4, 4, 4, 4));
tmp_but.setToolTipText("During SPIM, illumination piezo is moved to home position");
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
if (devices_.isValidMMDevice(piezoIlluminationDeviceKey_)) {
props_.setPropValue(
piezoIlluminationDeviceKey_,
Properties.Keys.MOVE_TO_HOME,
Properties.Values.DO_IT);
}
}
});
sheetPanel.add(tmp_but);
illumPiezoHomeEnable_ =
pu.makeCheckBox(
"Go home on tab activate",
Properties.Keys.PREFS_ENABLE_ILLUM_PIEZO_HOME,
panelName_,
false);
sheetPanel.add(illumPiezoHomeEnable_, "span 3, wrap");
sheetPanel.add(new JLabel("Sheet width:"));
sheetPanel.add(
new JLabel(""),
"span 2"); // TODO update this label with current value and/or allow user to directly enter
// value
sheetPanel.add(
makeIncrementButton(
micromirrorDeviceKey_, Properties.Keys.SA_AMPLITUDE_X_DEG, "-", (float) -0.01),
"split 2");
sheetPanel.add(
makeIncrementButton(
micromirrorDeviceKey_, Properties.Keys.SA_AMPLITUDE_X_DEG, "+", (float) 0.01));
JSlider tmp_sl =
pu.makeSlider(
0, // 0 is min amplitude
props_.getPropValueFloat(micromirrorDeviceKey_, Properties.Keys.MAX_DEFLECTION_X)
- props_.getPropValueFloat(
micromirrorDeviceKey_,
Properties.Keys.MIN_DEFLECTION_X), // compute max amplitude
1000, // the scale factor between internal integer representation and float
// representation
micromirrorDeviceKey_,
Properties.Keys.SA_AMPLITUDE_X_DEG);
sheetPanel.add(tmp_sl, "span 5, growx, center, wrap");
sheetPanel.add(new JLabel("Sheet offset:"));
sheetPanel.add(
new JLabel(""),
"span 2"); // TODO update this label with current value and/or allow user to directly enter
// value
sheetPanel.add(
makeIncrementButton(
micromirrorDeviceKey_, Properties.Keys.SA_OFFSET_X_DEG, "-", (float) -0.01),
"split 2");
sheetPanel.add(
makeIncrementButton(
micromirrorDeviceKey_, Properties.Keys.SA_OFFSET_X_DEG, "+", (float) 0.01));
tmp_but = new JButton("Center");
tmp_but.setMargin(new Insets(4, 8, 4, 8));
tmp_but.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
props_.setPropValue(micromirrorDeviceKey_, Properties.Keys.SA_OFFSET_X_DEG, 0f, true);
props_.callListeners(); // update plot
}
});
sheetPanel.add(tmp_but);
tmp_sl =
pu.makeSlider(
props.getPropValueFloat(micromirrorDeviceKey_, Properties.Keys.MIN_DEFLECTION_X)
/ 4, // min value
props.getPropValueFloat(micromirrorDeviceKey_, Properties.Keys.MAX_DEFLECTION_X)
/ 4, // max value
1000, // the scale factor between internal integer representation and float
// representation
micromirrorDeviceKey_,
Properties.Keys.SA_OFFSET_X_DEG);
sheetPanel.add(tmp_sl, "span 4, growx, center, wrap");
// Create larger panel with slice, sheet, and calibration panels
JPanel superPanel = new JPanel(new MigLayout("", "[]8[]", "[]8[]"));
superPanel.setBorder(BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
superPanel.add(slicePanel);
superPanel.add(new JSeparator(SwingConstants.VERTICAL), "growy, shrinkx, center");
superPanel.add(calibrationPanel, "wrap");
superPanel.add(new JSeparator(SwingConstants.HORIZONTAL), "span 3, growx, shrinky, wrap");
superPanel.add(sheetPanel, "span 3");
// Layout of the SetupPanel
joystickPanel_ = new JoystickSubPanel(joystick_, devices_, panelName_, side, prefs_);
add(joystickPanel_, "center");
add(superPanel, "center, aligny top, span 1 3, wrap");
beamPanel_ = new BeamSubPanel(gui_, devices_, panelName_, side, prefs_, props_);
add(beamPanel_, "center, wrap");
cameraPanel_ = new CameraSubPanel(gui_, cameras_, devices_, panelName_, side, prefs_, true);
add(cameraPanel_, "center");
} // end of SetupPanel constructor