@Override
public void setPrincipalInvestigator(
ProtocolPersonBase newPrincipalInvestigator, ProtocolBase protocol) {
if (protocol != null) {
ProtocolPerson currentPrincipalInvestigator =
(ProtocolPerson) getPrincipalInvestigator(protocol.getProtocolPersons());
if (newPrincipalInvestigator != null) {
newPrincipalInvestigator.setProtocolPersonRoleId(getPrincipalInvestigatorRole());
if (currentPrincipalInvestigator == null) {
protocol.getProtocolPersons().add(newPrincipalInvestigator);
} else if (!isDuplicatePerson(protocol.getProtocolPersons(), newPrincipalInvestigator)) {
protocol.getProtocolPersons().remove(currentPrincipalInvestigator);
protocol.getProtocolPersons().add(newPrincipalInvestigator);
}
// Assign the PI the APPROVER role if PI has a personId (for doc cancel).
if (newPrincipalInvestigator.getPersonId() != null) {
personEditableService.populateContactFieldsFromPersonId(newPrincipalInvestigator);
KcAuthorizationService kraAuthService =
KcServiceLocator.getService(KcAuthorizationService.class);
kraAuthService.addDocumentLevelRole(
newPrincipalInvestigator.getPersonId(), RoleConstants.PROTOCOL_APPROVER, protocol);
} else {
personEditableService.populateContactFieldsFromRolodexId(newPrincipalInvestigator);
}
}
}
}
@Override
public boolean hasDerivedRole(
String principalId,
List<String> groupIds,
String namespaceCode,
String roleName,
Map<String, String> qualification) {
validateRequiredAttributesAgainstReceived(qualification);
String protocolNumber = qualification.get(KcKimAttributes.PROTOCOL);
ProtocolBase protocol = getProtocol(protocolNumber);
if (protocol != null && CollectionUtils.isNotEmpty(protocol.getProtocolPersons())) {
for (ProtocolPersonBase person : protocol.getProtocolPersons()) {
// Find protocol person that matches the principal id
if (StringUtils.equals(principalId, person.getPersonId())) {
if (StringUtils.equals(roleName, person.getProtocolPersonRoleId())) {
return true;
}
}
}
}
return false;
}
private List<String> getPersonnelIds(ProtocolBase protocol) {
List<String> PersonnelIds = new ArrayList<String>();
for (ProtocolPersonBase person : protocol.getProtocolPersons()) {
if (StringUtils.isNotBlank(person.getPersonId())) {
PersonnelIds.add(person.getPersonId());
} else {
PersonnelIds.add(person.getRolodexId().toString());
}
}
return PersonnelIds;
}
/**
* This method is for several fields that does not have inquiry created by lookup frame work.
* Also, disable inquiry link for protocol title & schedule date.
*
* @see
* org.kuali.core.lookup.AbstractLookupableHelperServiceImpl#getInquiryUrl(org.kuali.core.bo.BusinessObject,
* java.lang.String)
*/
@Override
public HtmlData getInquiryUrl(BusinessObject bo, String propertyName) {
BusinessObject inqBo = bo;
String inqPropertyName = propertyName;
HtmlData inqUrl = new AnchorHtmlData();
if (!COMMITTEE_SCHEDULE_SCHEDULE_DATE.equals(propertyName)
&& !PROTOCOL_TITLE.equals(propertyName)) {
if (PROTOCOL_NUMBER.equals(propertyName)) {
inqBo = ((ProtocolSubmissionBase) bo).getProtocol();
} else if (propertyName.equals(COMMITTEE_ID)) {
inqBo = ((ProtocolSubmissionBase) bo).getCommittee();
} else if ("piName".equals(propertyName)) {
// -- commented as part of GENERATED CODE need to verify
ProtocolBase protocol = ((ProtocolSubmissionBase) bo).getProtocol();
ProtocolPersonBase principalInvestigator = protocol.getPrincipalInvestigator();
if (principalInvestigator != null) {
if (StringUtils.isNotBlank(principalInvestigator.getPersonId())) {
inqBo = this.kcPersonService.getKcPersonByPersonId(principalInvestigator.getPersonId());
inqPropertyName = ProtocolLookupConstants.Property.PERSON_ID;
} else {
if (principalInvestigator.getRolodexId() != null) {
inqBo = new Rolodex();
((Rolodex) inqBo).setRolodexId(principalInvestigator.getRolodexId());
inqPropertyName = ProtocolLookupConstants.Property.ROLODEX_ID;
}
}
}
}
if (inqBo != null) {
// withdraw committeeidfk = null will cause inqbo=null
inqUrl = super.getInquiryUrl(inqBo, inqPropertyName);
}
}
return inqUrl;
}
@Override
public List<RoleMembership> getRoleMembersFromDerivedRole(
String namespaceCode, String roleName, Map<String, String> qualification) {
validateRequiredAttributesAgainstReceived(qualification);
List<RoleMembership> members = new ArrayList<RoleMembership>();
String protocolNumber = qualification.get(KcKimAttributes.PROTOCOL);
ProtocolBase protocol = getProtocol(protocolNumber);
if (protocol != null && CollectionUtils.isNotEmpty(protocol.getProtocolPersons())) {
for (ProtocolPersonBase person : protocol.getProtocolPersons()) {
if (StringUtils.equals(person.getProtocolPersonRoleId(), roleName)
&& StringUtils.isNotBlank(person.getPerson().getPersonId())) {
members.add(
RoleMembership.Builder.create(
null, null, person.getPerson().getPersonId(), MemberType.PRINCIPAL, null)
.build());
}
}
}
return members;
}
public Schedule getSchedule(CommitteeSchedule committeeSchedule) {
Schedule schedule = Schedule.Factory.newInstance();
setScheduleMasterData(committeeSchedule, schedule.addNewScheduleMasterData());
PreviousSchedule prevSchedule = schedule.addNewPreviousSchedule();
setPreviousSchedule(committeeSchedule, prevSchedule.addNewScheduleMasterData());
NextSchedule nextScheduleType = schedule.addNewNextSchedule();
setNextSchedule(committeeSchedule, nextScheduleType.addNewScheduleMasterData());
getIrbPrintXmlUtilService().setMinutes(committeeSchedule, schedule);
setAttendance(committeeSchedule, schedule);
committeeSchedule.refreshReferenceObject("protocolSubmissions");
List<org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite> submissions =
committeeSchedule.getLatestProtocolSubmissions();
for (org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite protocolSubmission : submissions) {
ProtocolSubmission protocolSubmissionType = schedule.addNewProtocolSubmission();
SubmissionDetails protocolSubmissionDetail = protocolSubmissionType.addNewSubmissionDetails();
ProtocolSummary protocolSummary = protocolSubmissionType.addNewProtocolSummary();
ProtocolMasterData protocolMaster = protocolSummary.addNewProtocolMasterData();
String followUpAction = null;
String actionTypeCode = null;
Protocol protocol =
getBusinessObjectService()
.findByPrimaryKey(
Protocol.class,
Collections.singletonMap("protocolId", protocolSubmission.getProtocolId()));
List<ProtocolActionBase> protocolActions = protocol.getProtocolActions();
for (ProtocolActionBase protocolAction : protocolActions) {
actionTypeCode = protocolAction.getProtocolActionTypeCode();
if (actionTypeCode.equals(EXPEDIT_ACTION_TYPE_CODE)
|| actionTypeCode.equals(EXEMPT_ACTION_TYPE_CODE)) {
if (protocolAction.getFollowupActionCode() != null
&& protocolAction.getFollowupActionCode().equals(FOLLOW_UP_ACTION_CODE)) {
followUpAction = protocolAction.getFollowupActionCode();
}
break;
}
}
protocolMaster.setProtocolNumber(protocol.getProtocolNumber());
protocolMaster.setSequenceNumber(
new BigInteger(String.valueOf(protocol.getSequenceNumber())));
protocolMaster.setProtocolTitle(protocol.getTitle());
protocolMaster.setProtocolStatusCode(
new BigInteger(String.valueOf(protocol.getProtocolStatusCode())));
protocolMaster.setProtocolStatusDesc(protocol.getProtocolStatus().getDescription());
protocolMaster.setProtocolTypeCode(
new BigInteger(String.valueOf(protocol.getProtocolTypeCode())));
protocolMaster.setProtocolTypeDesc(protocol.getProtocolType().getDescription());
if (protocol.getDescription() != null) {
protocolMaster.setProtocolDescription(protocol.getDescription());
}
if (protocol.getApprovalDate() != null) {
protocolMaster.setApprovalDate(
getDateTimeService().getCalendar(protocol.getApprovalDate()));
}
if (protocol.getExpirationDate() != null) {
protocolMaster.setExpirationDate(
getDateTimeService().getCalendar(protocol.getExpirationDate()));
}
if (protocol.getFdaApplicationNumber() != null) {
protocolMaster.setFdaApplicationNumber(protocol.getFdaApplicationNumber());
}
if (protocol.getReferenceNumber1() != null) {
protocolMaster.setRefNumber1(protocol.getReferenceNumber1());
}
if (protocol.getReferenceNumber2() != null) {
protocolMaster.setRefNumber2(protocol.getReferenceNumber2());
}
protocolSubmissionDetail.setProtocolNumber(protocolSubmission.getProtocolNumber());
if (protocolSubmission.getProtocolSubmissionType() != null) {
protocolSubmissionDetail.setSubmissionTypeDesc(
protocolSubmission.getProtocolSubmissionType().getDescription());
}
if (protocolSubmission.getProtocolReviewTypeCode() != null) {
protocolSubmissionDetail.setProtocolReviewTypeCode(
new BigInteger(protocolSubmission.getProtocolReviewTypeCode()));
}
if (protocolSubmission.getProtocolReviewType() != null) {
protocolSubmissionDetail.setProtocolReviewTypeDesc(
protocolSubmission.getProtocolReviewType().getDescription());
}
if (protocolSubmission.getSubmissionTypeCode() != null) {
protocolSubmissionDetail.setSubmissionTypeCode(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionTypeCode())));
}
if (protocolSubmission.getProtocolSubmissionType() != null) {
protocolSubmissionDetail.setSubmissionTypeDesc(
protocolSubmission.getProtocolSubmissionType().getDescription());
}
if (protocolSubmission.getSubmissionNumber() != null) {
protocolSubmissionDetail.setSubmissionNumber(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionNumber())));
}
if (protocolSubmission.getSubmissionStatusCode() != null) {
protocolSubmissionDetail.setSubmissionStatusCode(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionStatusCode())));
}
if (protocolSubmission.getSubmissionStatus() != null) {
protocolSubmissionDetail.setSubmissionStatusDesc(
protocolSubmission.getSubmissionStatus().getDescription());
}
if (protocolSubmission.getSubmissionTypeQualifierCode() != null) {
protocolSubmissionDetail.setSubmissionTypeQualifierCode(
new BigInteger(protocolSubmission.getSubmissionTypeQualifierCode()));
}
if (protocolSubmission.getProtocolSubmissionQualifierType() != null) {
protocolSubmissionDetail.setSubmissionTypeQualifierDesc(
protocolSubmission.getProtocolSubmissionQualifierType().getDescription());
}
if (protocolSubmission.getYesVoteCount() != null) {
protocolSubmissionDetail.setYesVote(
BigInteger.valueOf(protocolSubmission.getYesVoteCount()));
} else {
protocolSubmissionDetail.setYesVote(BigInteger.ZERO);
}
if (protocolSubmission.getNoVoteCount() != null) {
protocolSubmissionDetail.setNoVote(BigInteger.valueOf(protocolSubmission.getNoVoteCount()));
} else {
protocolSubmissionDetail.setNoVote(BigInteger.ZERO);
}
if (protocolSubmission.getAbstainerCount() != null) {
protocolSubmissionDetail.setAbstainerCount(
BigInteger.valueOf(protocolSubmission.getAbstainerCount()));
} else {
protocolSubmissionDetail.setAbstainerCount(BigInteger.ZERO);
}
protocolSubmissionDetail.setVotingComments(protocolSubmission.getVotingComments());
setProtocolSubmissionAction(protocolSubmission, protocol, protocolSubmissionDetail);
if (protocolSubmission.getSubmissionDate() != null) {
protocolSubmissionDetail.setSubmissionDate(
getDateTimeService().getCalendar(protocolSubmission.getSubmissionDate()));
}
setSubmissionCheckListinfo(protocolSubmission, protocolSubmissionDetail);
setProtocolSubmissionReviewers(protocolSubmission, protocolSubmissionDetail);
List<ProtocolPersonBase> protocolPersons = protocol.getProtocolPersons();
for (ProtocolPersonBase protocolPerson : protocolPersons) {
if (protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_PRINCIPAL_INVESTIGATOR)
|| protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_CO_INVESTIGATOR)) {
Investigator investigator = protocolSummary.addNewInvestigator();
getIrbPrintXmlUtilService()
.setPersonRolodexType((ProtocolPerson) protocolPerson, investigator.addNewPerson());
if (protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_PRINCIPAL_INVESTIGATOR)) {
investigator.setPIFlag(true);
}
}
}
List<ProtocolRiskLevel> cvRiskLevels = protocol.getProtocolRiskLevels();
for (ProtocolRiskLevel protocolRiskLevelBean : cvRiskLevels) {
edu.mit.irb.irbnamespace.ProtocolSummaryDocument.ProtocolSummary.RiskLevels riskLevelType =
protocolSummary.addNewRiskLevels();
riskLevelType.setRiskLevelDescription(
protocolRiskLevelBean.getRiskLevel().getDescription());
riskLevelType.setComments(protocolRiskLevelBean.getComments());
}
List<ProtocolFundingSource> vecFundingSource = (List) protocol.getProtocolFundingSources();
int fundingSourceTypeCode;
String fundingSourceName, fundingSourceCode;
for (ProtocolFundingSource protocolFundingSourceBean : vecFundingSource) {
protocolFundingSourceBean.refreshNonUpdateableReferences();
edu.mit.irb.irbnamespace.ProtocolSummaryDocument.ProtocolSummary.FundingSource
fundingSource = protocolSummary.addNewFundingSource();
fundingSourceCode = protocolFundingSourceBean.getFundingSourceNumber();
fundingSourceTypeCode =
Integer.valueOf(protocolFundingSourceBean.getFundingSourceTypeCode());
fundingSourceName = getFundingSourceNameForType(fundingSourceTypeCode, fundingSourceCode);
fundingSource.setFundingSourceName(fundingSourceName);
if (protocolFundingSourceBean.getFundingSourceType() != null) {
fundingSource.setTypeOfFundingSource(
protocolFundingSourceBean.getFundingSourceType().getDescription());
}
}
getIrbPrintXmlUtilService()
.setProcotolMinutes(committeeSchedule, protocolSubmission, protocolSubmissionType);
}
setOtherActionItems(committeeSchedule, schedule);
return schedule;
}