/** Test of prepWordForSave method, of class PdfWord. */
@Test
public void testPrepWordForSave() {
assertEquals(instance.prepWordForSave(""), "");
assertEquals(instance.prepWordForSave("az"), "az");
assertEquals(instance.prepWordForSave("AZ"), "AZ");
assertEquals(instance.prepWordForSave("09"), "09");
assertEquals(instance.prepWordForSave("a'b"), "a'b");
assertEquals(instance.prepWordForSave("a'"), "a");
assertNotEquals(instance.prepWordForSave(Character.toString((char) 127)), "");
}
@Test
public void testVerifyQualitySangerOutOfRange() {
frag.setSequence(new Text("AGTAGTAGTAGTAGTAGTAGTAGTAGTAGT"));
frag.setQuality(
new Text("#############################" + Character.toString((char) 127))); // over range
assertEquals(
29,
SequencedFragment.verifyQuality(
frag.getQuality(), FormatConstants.BaseQualityEncoding.Sanger));
frag.setQuality(new Text("##### ########################")); // under range
assertEquals(
5,
SequencedFragment.verifyQuality(
frag.getQuality(), FormatConstants.BaseQualityEncoding.Sanger));
}