protected static Entry setSeedFields(ArabidopsisSeedData seedData, Entry entry) {
ArabidopsisSeed seed = (ArabidopsisSeed) entry;
if (seedData == null) return entry;
if (seedData.getHomozygosity() != null) seed.setHomozygosity(seedData.getHomozygosity());
if (StringUtils.isNotEmpty(seedData.getHarvestDate())) {
DateFormat format = new SimpleDateFormat("MM/dd/YYYY");
try {
Date date = format.parse(seedData.getHarvestDate());
seed.setHarvestDate(date);
} catch (ParseException e) {
Logger.error("Could not parse date " + seedData.getHarvestDate());
return null;
}
}
String ecoType = seedData.getEcotype() == null ? "" : seedData.getEcotype();
seed.setEcotype(ecoType);
String parents = seedData.getSeedParents() == null ? "" : seedData.getSeedParents();
seed.setParents(parents);
if (seedData.getGeneration() != null) {
Generation generation = Generation.fromString(seedData.getGeneration().name());
seed.setGeneration(generation);
} else {
seed.setGeneration(Generation.UNKNOWN);
}
if (seedData.getPlantType() != null) {
PlantType plantType = PlantType.fromString(seedData.getPlantType().name());
seed.setPlantType(plantType);
} else {
seed.setPlantType(PlantType.NULL);
}
seed.setSentToABRC(seedData.isSentToAbrc());
return entry;
}
private static Entry infoToSeedForField(Entry entry, String value, EntryField field) {
if (!entry.getRecordType().equalsIgnoreCase(EntryType.ARABIDOPSIS.toString())) return entry;
ArabidopsisSeed seed = (ArabidopsisSeed) entry;
switch (field) {
case HOMOZYGOSITY:
seed.setHomozygosity(value);
return seed;
case ECOTYPE:
seed.setEcotype(value);
return seed;
case HARVEST_DATE:
if (value != null && !value.isEmpty()) {
try {
Date date = SimpleDateFormat.getDateInstance(DateFormat.SHORT).parse(value);
seed.setHarvestDate(date);
} catch (ParseException ia) {
Logger.error(ia);
}
}
return seed;
case GENERATION:
seed.setGeneration(Generation.fromString(value));
return seed;
case SENT_TO_ABRC:
seed.setSentToABRC("yes".equalsIgnoreCase(value) || "true".equalsIgnoreCase(value));
return seed;
case PLANT_TYPE:
seed.setPlantType(PlantType.fromString(value));
return seed;
case PARENTS:
seed.setParents(value);
return seed;
default:
return seed;
}
}