@Override
public void run() throws TaxomaticException {
List<Taxon> taxaToSave = new ArrayList<Taxon>();
for (Taxon mergedTaxon : taxaToMerge) {
mergedTaxon.setStatus(TaxonStatus.STATUS_SYNONYM);
{
Synonym synonym = Taxon.synonymizeTaxon(mergedTaxon);
synonym.setStatus(Synonym.MERGE);
synonym.setTaxon(mergeTarget);
mergeTarget.getSynonyms().add(synonym);
}
{
Synonym synonym = Taxon.synonymizeTaxon(mergeTarget);
synonym.setStatus(Synonym.MERGE);
synonym.setTaxon(mergedTaxon);
mergedTaxon.getSynonyms().add(synonym);
}
for (Taxon child : mergedTaxon.getChildren()) {
child.setParent(mergeTarget);
mergeTarget.getChildren().add(child);
taxaToSave.add(child);
}
taxaToSave.add(mergedTaxon);
}
taxaToSave.add(mergeTarget);
taxomaticIO.updateAndSave(taxaToSave, operation.getUser(), true);
recordOperationHistory(taxaToSave, operation);
}
