public void testFlyRegHandlerNewFormat() throws Exception {
String gff =
"2L\tREDfly\tregulatory_region\t2456365\t2456372\t.\t.\t.\tID=\"Unspecified_dpp:REDFLY:TF000068\"; Dbxref=\"Flybase:FBgn0000490, PMID:8543160, REDfly:644, FlyBase:\"; Evidence=footprint/binding assay; factor=Unspecified; target=dpp\n"
+ "2L\tREDfly\tregulatory_region\t2456352\t2456369\t.\t.\t.\tID=\"dl_dpp:REDFLY:TF000069\"; Dbxref=\"Flybase:FBgn0000490, PMID:8458580, REDfly:645, FlyBase:FBgn0000463\"; Evidence=footprint/binding assay; factor=dl; target=dpp\n"
+ "2L\tREDfly\tregulatory_region\t2456423\t2456433\t.\t.\t.\tID=\"Unspecified_dpp:REDFLY:TF000067\"; Dbxref=\"Flybase:FBgn0000490, PMID:8543160, REDfly:643, FlyBase:\"; Evidence=footprint/binding assay; factor=Unspecified; target=dpp\n";
BufferedReader srcReader = new BufferedReader(new StringReader(gff));
converter.parse(srcReader);
converter.storeAll();
// uncomment to write a new target items files
// writeItemsFile(writer.getItems(), "flyreg-tgt-items-newformat.xml");
Set<Item> expected = readItemSet("FlyRegGFF3RecordHandlerNewFormatTest.xml");
assertEquals(expected, writer.getItems());
}
public void tearDown() throws Exception {
converter.close();
}