public ArrayList getStructureData(String urlString, ArrayList list) {
KeyValueBean keyValue = new KeyValueBean();
Element xmlElement = null;
try {
System.out.println("1");
ReadXML readXML = new ReadXML();
System.out.println("2");
String xmlString = readXML.convertFromURLToString(urlString);
System.out.println("3");
xmlElement = readXML.getDocumentElementFromString(xmlString);
System.out.println("9");
keyValue.setKey(readXML.getStringValueForXMLTag(xmlElement, "Code"));
System.out.println("10");
keyValue.setValue(readXML.getStringValueForXMLTag(xmlElement, "Description"));
System.out.println("11");
list.add(keyValue);
} catch (Exception e) {
e.printStackTrace();
} finally {
xmlElement = null;
}
return list;
}
public ArrayList get2DImageDataList(String urlString, ArrayList list) {
try {
ReadXML readXML = new ReadXML();
System.out.println("************************URLString is******************* - " + urlString);
String xmlString = readXML.convertFromURLToString(urlString);
System.out.println("XMLString is - " + xmlString);
list = readXML.getImageData(xmlString);
System.out.println("List Size is - " + list.size());
Iterator iterator = list.iterator();
/* CentralServiceVO vo = null;
while (iterator.hasNext()) {
vo = (CentralServiceVO)iterator.next();
//System.out.println("URL = "+vo.getWms());
//System.out.println("TFW Values = "+vo.getTfwValues());
}
*/
} catch (Exception e) {
e.printStackTrace();
}
return list;
}
public EMAPServiceVO getPOIFromEMAPData(String urlString, EMAPServiceVO vo) {
try {
ReadXML readXML = new ReadXML();
String xmlString = readXML.convertFromURLToString(urlString);
Element xmlElement = readXML.getDocumentElementFromString(xmlString);
vo.setValue(readXML.getStringValueForXMLTag(xmlElement, "gml:pos"));
} catch (Exception e) {
e.printStackTrace();
}
return vo;
}
public static void main(String[] s) {
ReadXML readXML = new ReadXML();
try {
// Step 1 - read xml response string
// String xmlString =
// readXML.convertFromURLToString("http://incf-dev-local.crbs.ucsd.edu:8080/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3");
// System.out.println("XML String is - " + xmlString);
/*
//Step 2 - Create a xml document from the string
Element xmlElement = readXML.getDocumentElementFromString(xmlString);
//Step 3 - Get a value from the xml document
String [] elementValues = readXML.getStringValuesForXMLTag(xmlElement, "ows:Identifier");
for (int i = 0; i < elementValues.length; i++) {
System.out.println("Element Value is - " + elementValues[i]);
}
*/
// String xmlString =
// "http://incf-dev-local.crbs.ucsd.edu/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3";
// String xmlString =
// "http://132.239.131.188:8080/ucsd/atlas?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:sagittal;tolerance=3";
// xmlString =
// "http://132.239.131.188:8080/atlas-central?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsname=Mouse_ABAvoxel_1.0;x=263;y=159;z=227;filter=maptype:Sagittal;tolerance=3";
// String xmlString =
// "http://incf-dev-local.crbs.ucsd.edu/aba/atlas?service=WPS&version=1.0.0&request=Execute&Identifier=Get2DImagesByPOI&DataInputs=srsName=Mouse_AGEA_1.0;x=6600;y=4000;z=5600;filter=maptype:coronal";
String xmlString =
"http://lxbisel.macs.hw.ac.uk:8080/EMAPServiceController?request=Execute&identifier=TransformPOI&dataInputs=inputSRSCode=Mouse_WHS_1.0;targetSRSCode=Mouse_EMAP-T26_1.0;x=12;y=-29;z=-73";
EMAPServiceVO vo = new EMAPServiceVO();
vo = readXML.getPOIFromEMAPData(xmlString, vo);
System.out.println("VO - " + vo.getValue());
/* ArrayList list = new ArrayList();
//list = readXML.getImageData(xmlString);
list = readXML.get2DImageDataList(xmlString, list);
System.out.println("*****************List = "+list.size());
Iterator iterator = list.iterator();
EMAPServiceVO vo = null;
while (iterator.hasNext()) {
vo = (EMAPServiceVO)iterator.next();
System.out.println("*****************URL = "+vo.getWms());
System.out.println("*****************TFW Values = "+vo.getTfwValues());
}
*/
/* ArrayList completeStructureList = new ArrayList();
CentralServiceVO vo = new CentralServiceVO();
// 2a - Call the method from ABA Hub
String abaURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-aba?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(abaURL, completeStructureList);
// 2b - Call the method from UCSD Hub
String ucsdURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-ucsd?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(ucsdURL, completeStructureList);
// 2c - Call the method from WHS Hub
String whsURL = "http://incf-dev.crbs.ucsd.edu:8080/atlas-whs?service=WPS&version=1.0.0&request=Execute&Identifier=GetStructureNamesByPOI&DataInputs=srsName=Mouse_ABAvoxel_1.0;x=280;y=112;z=162;vocabulary=Mouse_ABAvoxel_1.0;filter=structureset:Fine";
completeStructureList = readXML.getStructureData(whsURL, completeStructureList);
Iterator iterator = completeStructureList.iterator();
KeyValueBean keyValue = null;
while (iterator.hasNext()) {
keyValue = (KeyValueBean)iterator.next();
System.out.println("Name = "+keyValue.getKey());
System.out.println("Description = "+keyValue.getValue());
}
*/
} catch (Exception e) {
e.printStackTrace();
}
}
