public Collection<BinaryInteraction> getBinaryInteraction() throws PsiscoreException {
if (inputData.mitabUsed()) {
return inputData.getMitabInteractions();
} else {
throw new PsiscoreException("No valid input detected.", new PsiscoreFault());
}
}
/** @param inputData the inputData to set */
public void setInputData(PsiscoreInput inputData) {
this.inputData = inputData;
if (inputData.xmlUsed()) {
inputFormat = PsiTools.RETURN_TYPE_XML25;
} else if (inputData.mitabUsed()) {
inputFormat = PsiTools.RETURN_TYPE_MITAB25;
}
}
/**
* Return the EntrySet representation of the input data. if the input is present in the xml format
* already, no conversion needs to be perfomred. if the input is present as a mitab, it will be
* converted to xml and then stored for later access
*
* @return the entrySet
* @throws InvalidArgumentException
* @throws PsiscoreException
*/
public EntrySet getEntrySet() throws PsiscoreException {
if (inputData.xmlUsed()) {
return inputData.getXmlEntySet();
} else if (inputData.mitabUsed()) {
convertedMitab = true;
this.inputData.setXmlEntySet(
PsiTools.getInstance()
.getEntrySetFromBinaryInteractions(inputData.getMitabInteractions()));
return inputData.getXmlEntySet();
} else {
throw new PsiscoreException("No valid input detected.", new PsiscoreFault());
}
}