/**
* Clone a given graph with same node/edge structure and same attributes.
*
* @param g the graph to clone
* @return a copy of g
*/
public static Graph clone(Graph g) {
Graph copy;
try {
Class<? extends Graph> cls = g.getClass();
copy = cls.getConstructor(String.class).newInstance(g.getId());
} catch (Exception e) {
logger.warning(String.format("Cannot create a graph of %s.", g.getClass().getName()));
copy = new AdjacencyListGraph(g.getId());
}
copyAttributes(g, copy);
for (int i = 0; i < g.getNodeCount(); i++) {
Node source = g.getNode(i);
Node target = copy.addNode(source.getId());
copyAttributes(source, target);
}
for (int i = 0; i < g.getEdgeCount(); i++) {
Edge source = g.getEdge(i);
Edge target =
copy.addEdge(
source.getId(),
source.getSourceNode().getId(),
source.getTargetNode().getId(),
source.isDirected());
copyAttributes(source, target);
}
return copy;
}
/**
* Compute the scores for all relevant communities for the selected node using Leung algorithm.
*
* @param u The node for which the scores computation is performed
* @complexity O(DELTA) where DELTA is is the average node degree in the network
*/
@Override
protected void communityScores(Node u) {
/*
* Reset the scores for each communities
*/
communityScores = new HashMap<Object, Double>();
/*
* Iterate over the nodes that this node "hears"
*/
for (Edge e : u.getEnteringEdgeSet()) {
Node v = e.getOpposite(u);
/*
* Update the count for this community
*/
if (v.hasAttribute(marker)) {
// Compute the neighbor node current score
Double score = (Double) v.getAttribute(marker + ".score") * Math.pow(v.getInDegree(), m);
/*
* The rest of the formula depends on the weighted status of the
* network
*/
Double weight;
if (e.hasAttribute(weightMarker))
if (e.isDirected()) {
Edge e2 = v.getEdgeToward(u.getId());
if (e2 != null && e2.hasAttribute(weightMarker))
weight =
(Double) e.getAttribute(weightMarker) + (Double) e2.getAttribute(weightMarker);
else weight = (Double) e.getAttribute(weightMarker);
} else weight = (Double) e.getAttribute(weightMarker);
else weight = 1.0;
// Update the score of the according community
if (communityScores.get(v.getAttribute(marker)) == null)
communityScores.put(v.getAttribute(marker), score * weight);
else
communityScores.put(
v.getAttribute(marker),
communityScores.get(v.getAttribute(marker)) + (score * weight));
}
}
}