private EnrichmentEngineResponseDto computeEnrichment(EnrichmentEngineRequestDto request)
throws ApplicationException, NoRelatedGenesInfoException {
if (request == null) {
return null;
}
if (request.getNodes().size() == 0) {
throw new NoRelatedGenesInfoException();
}
return mania.computeEnrichment(request);
}
private RelatedGenesEngineResponseDto runQuery(RelatedGenesEngineRequestDto request)
throws DataStoreException {
try {
request.setProgressReporter(NullProgressReporter.instance());
RelatedGenesEngineResponseDto result;
result = mania.findRelated(request);
request.setCombiningMethod(result.getCombiningMethodApplied());
networkUtils.normalizeNetworkWeights(result);
return result;
} catch (ApplicationException e) {
Logger logger = Logger.getLogger(getClass());
logger.error("Unexpected error", e); // $NON-NLS-1$
return null;
}
}
