public static void saveCSV(File targetFile, CSVFormat format, MLDataSet set) {
try {
FileWriter outFile = new FileWriter(targetFile);
PrintWriter out = new PrintWriter(outFile);
for (MLDataPair data : set) {
StringBuilder line = new StringBuilder();
for (int i = 0; i < data.getInput().size(); i++) {
double d = data.getInput().getData(i);
BasicFile.appendSeparator(line, format);
line.append(format.format(d, Encog.DEFAULT_PRECISION));
}
for (int i = 0; i < data.getIdeal().size(); i++) {
double d = data.getIdeal().getData(i);
BasicFile.appendSeparator(line, format);
line.append(format.format(d, Encog.DEFAULT_PRECISION));
}
out.println(line);
}
out.close();
outFile.close();
} catch (IOException ex) {
throw new EncogError(ex);
}
}
public void recognizer(List<File> files) {
FeatureExtractor fe = new FeatureExtractor();
MLDataSet trainingSet = new BasicMLDataSet();
for (File f : files) {
// System.out.println(f.getAbsolutePath());
List<double[]> data;
try {
data = fe.fileProcessor(f);
MLData mldataIn = new BasicMLData(data.get(0));
double[] out = new double[NUM_OUT];
Integer index = new Integer(Labeler.getLabel(f));
// System.out.println(index+""+data.get(0));
out[index] = 1.;
System.out.println(out.toString());
MLData mldataout = new BasicMLData(out);
trainingSet.add(mldataIn, mldataout);
} catch (FileNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
BasicNetwork network = new BasicNetwork();
network.addLayer(new BasicLayer(NUM_IN));
network.addLayer(new BasicLayer(new ActivationSigmoid(), true, 4 * NUM_IN));
// network.addLayer(new BasicLayer(new ActivationSigmoid(), true, 2 * NUM_IN));
network.addLayer(new BasicLayer(new ActivationSigmoid(), false, NUM_OUT));
network.getStructure().finalizeStructure();
network.reset();
// train the neural network
ResilientPropagation train = new ResilientPropagation(network, trainingSet);
System.out.println("Training Set: " + trainingSet.size());
int epoch = 1;
do {
train.iteration();
System.out.println("Epoch:" + epoch + " Error-->" + train.getError());
epoch++;
} while (train.getError() > 0.001);
train.finishTraining();
// test the neural network
System.out.println("Neural Network Results:");
for (MLDataPair pair : trainingSet) {
final MLData output = network.compute(pair.getInput());
System.out.println(
"actual-->" + Labeler.getWord(output) + ", ideal-->" + Labeler.getWord(pair.getIdeal()));
}
Encog.getInstance().shutdown();
}
public static double calculateClassificationError(MLClassification method, MLDataSet data) {
int total = 0;
int correct = 0;
for (MLDataPair pair : data) {
int ideal = (int) pair.getIdeal().getData(0);
int actual = method.classify(pair.getInput());
if (actual == ideal) correct++;
total++;
}
return (double) (total - correct) / (double) total;
}
public static double calculateRegressionError(MLRegression method, MLDataSet data) {
final ErrorCalculation errorCalculation = new ErrorCalculation();
if (method instanceof MLContext) ((MLContext) method).clearContext();
for (final MLDataPair pair : data) {
final MLData actual = method.compute(pair.getInput());
errorCalculation.updateError(
actual.getData(), pair.getIdeal().getData(), pair.getSignificance());
}
return errorCalculation.calculate();
}
/**
* Evaluate the network and display (to the console) the output for every value in the training
* set. Displays ideal and actual.
*
* @param network The network to evaluate.
* @param training The training set to evaluate.
*/
public static void evaluate(final MLRegression network, final MLDataSet training) {
for (final MLDataPair pair : training) {
final MLData output = network.compute(pair.getInput());
System.out.println(
"Input="
+ EncogUtility.formatNeuralData(pair.getInput())
+ ", Actual="
+ EncogUtility.formatNeuralData(output)
+ ", Ideal="
+ EncogUtility.formatNeuralData(pair.getIdeal()));
}
}
/**
* Calculate the error for this neural network. The error is calculated using
* root-mean-square(RMS).
*
* @param data The training set.
* @return The error percentage.
*/
public double calculateError(final MLDataSet data) {
final ErrorCalculation errorCalculation = new ErrorCalculation();
final double[] actual = new double[this.outputCount];
final MLDataPair pair = BasicMLDataPair.createPair(data.getInputSize(), data.getIdealSize());
for (int i = 0; i < data.getRecordCount(); i++) {
data.getRecord(i, pair);
compute(pair.getInputArray(), actual);
errorCalculation.updateError(actual, pair.getIdealArray(), pair.getSignificance());
}
return errorCalculation.calculate();
}
public static ObjectPair<double[][], double[][]> trainingToArray(MLDataSet training) {
int length = (int) training.getRecordCount();
double[][] a = new double[length][training.getInputSize()];
double[][] b = new double[length][training.getIdealSize()];
int index = 0;
for (MLDataPair pair : training) {
EngineArray.arrayCopy(pair.getInputArray(), a[index]);
EngineArray.arrayCopy(pair.getIdealArray(), b[index]);
index++;
}
return new ObjectPair<double[][], double[][]>(a, b);
}
/** Approximate the weights based on the input values. */
private void initWeights() {
if (this.training.getRecordCount() != this.network.getInstarCount()) {
throw new NeuralNetworkError(
"If the weights are to be set from the "
+ "training data, then there must be one instar "
+ "neuron for each training element.");
}
int i = 0;
for (final MLDataPair pair : this.training) {
for (int j = 0; j < this.network.getInputCount(); j++) {
this.network.getWeightsInputToInstar().set(j, i, pair.getInput().getData(j));
}
i++;
}
this.mustInit = false;
}
/**
* The main method.
*
* @param args No arguments are used.
*/
public static void main(final String args[]) {
// create a neural network, without using a factory
BasicNetwork network = new BasicNetwork();
network.addLayer(new BasicLayer(null, true, 2));
network.addLayer(new BasicLayer(new ActivationSigmoid(), true, 3));
network.addLayer(new BasicLayer(new ActivationSigmoid(), false, 1));
network.getStructure().finalizeStructure();
network.reset();
// create training data
MLDataSet trainingSet = new BasicMLDataSet(XOR_INPUT, XOR_IDEAL);
// train the neural network
final StochasticGradientDescent train = new StochasticGradientDescent(network, trainingSet);
train.setUpdateRule(new RMSPropUpdate());
int epoch = 1;
do {
train.iteration();
System.out.println("Epoch #" + epoch + " Error:" + train.getError());
epoch++;
} while (train.getError() > 0.01);
train.finishTraining();
// test the neural network
System.out.println("Neural Network Results:");
for (MLDataPair pair : trainingSet) {
final MLData output = network.compute(pair.getInput());
System.out.println(
pair.getInput().getData(0)
+ ","
+ pair.getInput().getData(1)
+ ", actual="
+ output.getData(0)
+ ",ideal="
+ pair.getIdeal().getData(0));
}
PerturbationFeatureImportanceCalc d;
Encog.getInstance().shutdown();
}
/** {@inheritDoc} */
@Override
public final void iteration() {
if (this.mustInit) {
initWeights();
}
double worstDistance = Double.NEGATIVE_INFINITY;
for (final MLDataPair pair : this.training) {
final MLData out = this.network.computeInstar(pair.getInput());
// determine winner
final int winner = EngineArray.indexOfLargest(out.getData());
// calculate the distance
double distance = 0;
for (int i = 0; i < pair.getInput().size(); i++) {
final double diff =
pair.getInput().getData(i) - this.network.getWeightsInputToInstar().get(i, winner);
distance += diff * diff;
}
distance = BoundMath.sqrt(distance);
if (distance > worstDistance) {
worstDistance = distance;
}
// train
for (int j = 0; j < this.network.getInputCount(); j++) {
final double delta =
this.learningRate
* (pair.getInput().getData(j)
- this.network.getWeightsInputToInstar().get(j, winner));
this.network.getWeightsInputToInstar().add(j, winner, delta);
}
}
setError(worstDistance);
}
/** {@inheritDoc} */
@Override
public double calculateError(final MLDataSet data) {
if (!this.hasValidClassificationTarget()) return 1.0;
// do the following just to throw an error if there is no classification target
getClassificationTarget();
int badCount = 0;
int totalCount = 0;
for (MLDataPair pair : data) {
int c = this.classify(pair.getInput());
totalCount++;
if (c != pair.getInput().getData(this.classificationTarget)) {
badCount++;
}
}
return (double) badCount / (double) totalCount;
}
