public List getCategories() {
List concepts = null;
try {
// GetReturnType request = new GetReturnType();
// request.setType("limited");
GetCategoriesType request = new GetCategoriesType();
request.setType("core");
request.setHiddens(false);
request.setSynonyms(false);
OntologyResponseMessage msg = new OntologyResponseMessage();
StatusType procStatus = null;
while (procStatus == null || !procStatus.getType().equals("DONE")) {
String response = OntServiceDriver.getCategories(request, "FIND");
procStatus = msg.processResult(response);
// if other error codes
// TABLE_ACCESS_DENIED and USER_INVALID, DATABASE ERROR
if (procStatus.getType().equals("ERROR")) {
System.setProperty("errorMessage", procStatus.getValue());
return concepts;
}
procStatus.setType("DONE");
}
ConceptsType allConcepts = msg.doReadConcepts();
if (allConcepts != null) concepts = allConcepts.getConcept();
} catch (AxisFault e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Ontology cell unavailable");
} catch (I2B2Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", e.getMessage());
} catch (Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Remote server unavailable");
}
return concepts;
}
public class FindTool extends ApplicationWindow {
private Log log = LogFactory.getLog(FindTool.class.getName());
private NodeBrowser browser;
private String findText = null;
private String categoryKey;
private String match;
private Button findButton;
private List categories;
private StatusLineManager slm;
public static final String OS = System.getProperty("os.name").toLowerCase();
public FindTool(StatusLineManager slm) {
super(null);
this.slm = slm;
}
public Control getFindTabControl(TabFolder tabFolder) {
// Find Composite
Composite compositeFind = new Composite(tabFolder, SWT.NULL);
GridLayout gridLayout = new GridLayout(2, false);
compositeFind.setLayout(gridLayout);
/* GridData fromTreeGridData = new GridData (GridData.FILL_BOTH);
fromTreeGridData.grabExcessHorizontalSpace = true;
fromTreeGridData.grabExcessVerticalSpace = true;
// fromTreeGridData.widthHint = 300;
compositeFind.setLayoutData(fromTreeGridData);
*/
// First Set up the match combo box
final Combo matchCombo = new Combo(compositeFind, SWT.READ_ONLY);
matchCombo.add("Starting with");
matchCombo.add("Ending with");
matchCombo.add("Containing");
matchCombo.add("Exact");
// set default category
matchCombo.setText("Containing");
match = "Containing";
matchCombo.addSelectionListener(
new SelectionListener() {
public void widgetSelected(SelectionEvent e) {
// Item in list has been selected
match = matchCombo.getItem(matchCombo.getSelectionIndex());
}
public void widgetDefaultSelected(SelectionEvent e) {
// this is not an option (text cant be entered)
}
});
// Then set up the Find text combo box
final Combo findCombo = new Combo(compositeFind, SWT.DROP_DOWN);
GridData findComboData = new GridData(GridData.FILL_HORIZONTAL);
findComboData.widthHint = 200;
findComboData.horizontalSpan = 1;
findCombo.setLayoutData(findComboData);
findCombo.addModifyListener(
new ModifyListener() {
public void modifyText(ModifyEvent e) {
// Text Item has been entered
// Does not require 'return' to be entered
findText = findCombo.getText();
}
});
findCombo.addSelectionListener(
new SelectionListener() {
public void widgetSelected(SelectionEvent e) {}
public void widgetDefaultSelected(SelectionEvent e) {
findText = findCombo.getText();
if (findCombo.indexOf(findText) < 0) {
findCombo.add(findText);
}
if (findButton.getText().equals("Find")) {
slm.setMessage("Performing search");
slm.update(true);
browser.flush();
ModifierComposite.getInstance().disableComposite();
System.setProperty("statusMessage", "Calling WebService");
TreeNode placeholder = new TreeNode(1, "placeholder", "working...", "C-UNDEF");
browser.rootNode.addChild(placeholder);
browser.refresh();
browser.getFindData(categoryKey, categories, findText, match).start();
findButton.setText("Cancel");
} else {
System.setProperty("statusMessage", "Canceling WebService call");
browser.refresh();
browser.stopRunning = true;
findButton.setText("Find");
}
}
});
// Next include 'Find' Button
findButton = new Button(compositeFind, SWT.PUSH);
findButton.setText("Find");
GridData findButtonData = new GridData();
if (OS.startsWith("mac")) findButtonData.widthHint = 80;
else findButtonData.widthHint = 60;
findButton.setLayoutData(findButtonData);
findButton.addMouseListener(
new MouseAdapter() {
@Override
public void mouseDown(MouseEvent e) {
// Add item to findCombo drop down list if not already there
if (findText == null) {
return;
}
if (findCombo.indexOf(findText) < 0) {
findCombo.add(findText);
}
if (findButton.getText().equals("Find")) {
ModifierComposite.getInstance().disableComposite();
browser.flush();
System.setProperty("statusMessage", "Calling WebService");
TreeNode placeholder = new TreeNode(1, "placeholder", "working...", "C-UNDEF");
browser.rootNode.addChild(placeholder);
browser.refresh();
browser.getFindData(categoryKey, categories, findText, match).start();
findButton.setText("Cancel");
} else {
System.setProperty("statusMessage", "Canceling WebService call");
browser.refresh();
browser.stopRunning = true;
findButton.setText("Find");
}
}
});
// Next set up the category combo box
final Combo categoryCombo = new Combo(compositeFind, SWT.READ_ONLY);
setCategories(categoryCombo);
categoryCombo.addSelectionListener(
new SelectionListener() {
public void widgetSelected(SelectionEvent e) {
// Item in list has been selected
if (categoryCombo.getSelectionIndex() == 0) categoryKey = "any";
else {
ConceptType concept =
(ConceptType) categories.get(categoryCombo.getSelectionIndex() - 1);
categoryKey = StringUtil.getTableCd(concept.getKey());
}
}
public void widgetDefaultSelected(SelectionEvent e) {
// this is not an option (text cant be entered)
}
});
ModifierComposite.setInstance(compositeFind);
browser = new NodeBrowser(compositeFind, 1, findButton, slm);
return compositeFind;
}
private void setCategories(Combo categoryCombo) {
// set default category for combo box
categoryCombo.add("Any Category");
categoryCombo.setText("Any Category");
categoryKey = "any";
categories = getCategories();
if (categories != null) {
Iterator categoriesIterator = categories.iterator();
while (categoriesIterator.hasNext()) {
ConceptType category = (ConceptType) categoriesIterator.next();
String name = category.getName();
categoryCombo.add(name);
}
}
return;
}
public List getCategories() {
List concepts = null;
try {
// GetReturnType request = new GetReturnType();
// request.setType("limited");
GetCategoriesType request = new GetCategoriesType();
request.setType("core");
request.setHiddens(false);
request.setSynonyms(false);
OntologyResponseMessage msg = new OntologyResponseMessage();
StatusType procStatus = null;
while (procStatus == null || !procStatus.getType().equals("DONE")) {
String response = OntServiceDriver.getCategories(request, "FIND");
procStatus = msg.processResult(response);
// if other error codes
// TABLE_ACCESS_DENIED and USER_INVALID, DATABASE ERROR
if (procStatus.getType().equals("ERROR")) {
System.setProperty("errorMessage", procStatus.getValue());
return concepts;
}
procStatus.setType("DONE");
}
ConceptsType allConcepts = msg.doReadConcepts();
if (allConcepts != null) concepts = allConcepts.getConcept();
} catch (AxisFault e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Ontology cell unavailable");
} catch (I2B2Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", e.getMessage());
} catch (Exception e) {
log.error(e.getMessage());
System.setProperty("errorMessage", "Remote server unavailable");
}
return concepts;
}
}
