private static HashMap<String, CyRootNetwork> getRootNetworkMap(
CyNetworkManager cyNetworkManager, CyRootNetworkManager cyRootNetworkManager) {
HashMap<String, CyRootNetwork> name2RootMap = new HashMap<String, CyRootNetwork>();
for (CyNetwork net : cyNetworkManager.getNetworkSet()) {
final CyRootNetwork rootNet = cyRootNetworkManager.getRootNetwork(net);
if (!name2RootMap.containsValue(rootNet))
name2RootMap.put(rootNet.getRow(rootNet).get(CyRootNetwork.NAME, String.class), rootNet);
}
return name2RootMap;
}
// Build the key-node map for the entire root network
// Note: The keyColName should start with "shared"
private void initNodeMap() {
String networkCollectionName = this.rootNetworkList.getSelectedValue().toString();
CyRootNetwork rootNetwork = this.name2RootMap.get(networkCollectionName);
if (networkCollectionName.equalsIgnoreCase(CRERATE_NEW_COLLECTION_STRING)) {
return;
}
String targetKeyColName = this.targetColumnList.getSelectedValue();
if (rootNetwork == null) {
return;
}
Iterator<CyNode> it = rootNetwork.getNodeList().iterator();
while (it.hasNext()) {
CyNode node = it.next();
Object keyValue = rootNetwork.getRow(node).getRaw(targetKeyColName);
this.nMap.put(keyValue, node);
}
}