@Inject
public CreateThematicMapDialog(
CySwingApplication application, CyApplicationManager applicationManager) {
super(application.getJFrame(), true);
CyNetwork inputNetwork = applicationManager.getCurrentNetwork();
this.networkName = inputNetwork.getRow(inputNetwork).get(CyNetwork.NAME, String.class);
setTitle("Create Thematic Map: " + networkName);
this.applicationManager = applicationManager;
createContents();
updateEnablement();
}
/**
* @param args the function arguments which must be either one object of type Double or Long
* @return the result of the function evaluation which is the natural logarithm of the first
* argument
*/
public Object evaluateFunction(final Object[] args) {
final Long edgeID = FunctionUtil.getArgAsLong(args[0]);
final CyNetwork currentNetwork = applicationManager.getCurrentNetwork();
if (currentNetwork == null) return (Long) (-1L);
final CyEdge edge = currentNetwork.getEdge(edgeID);
if (edge == null)
throw new IllegalArgumentException("\"" + edgeID + "\" is not a valid edge identifier.");
return edge.getSource().getSUID();
}
@Tunable(description = "Node attribute to use to weight layout", context = "nogui")
public ListSingleSelection<String> getNodeAttribute() {
// Make sure we know the network
if (network == null) network = appMgr.getCurrentNetwork();
List<String> attrs = getSupportedNodeAttributes();
if (attrs == null || attrs.size() == 0) {
possibleNodeAttributes = null;
} else {
possibleNodeAttributes = new ListSingleSelection<String>(attrs);
}
return possibleNodeAttributes;
}
@Override
public void run(TaskMonitor taskMonitor) throws Exception {
if (network == null) network = appMgr.getCurrentNetwork();
views = new ArrayList<CyNetworkView>(viewMgr.getNetworkViews(network));
taskMonitor.showMessage(
TaskMonitor.Level.INFO, "Views for network " + DataUtils.getNetworkTitle(network));
for (CyNetworkView view : views) {
taskMonitor.showMessage(TaskMonitor.Level.INFO, " " + view);
return;
}
}
@Override
@SuppressWarnings("unchecked")
public void setValue(final Object value) {
if (value instanceof ContinuousMapping == false)
throw new IllegalArgumentException("Value should be ContinuousMapping: this is " + value);
final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
final CyNetwork currentNetwork = appMgr.getCurrentNetwork();
if (currentNetwork == null) return;
mapping = (ContinuousMapping<K, V>) value;
Class<? extends CyIdentifiable> type =
(Class<? extends CyIdentifiable>) mapping.getVisualProperty().getTargetDataType();
final CyNetworkTableManager netTblMgr = servicesUtil.get(CyNetworkTableManager.class);
final CyTable attr =
netTblMgr.getTable(appMgr.getCurrentNetwork(), type, CyNetwork.DEFAULT_ATTRS);
final VisualMappingManager vmMgr = servicesUtil.get(VisualMappingManager.class);
editorPanel =
new C2CMappingEditorPanel<K, V>(vmMgr.getCurrentVisualStyle(), mapping, attr, servicesUtil);
}
@Override
public void run(final TaskMonitor taskMonitor) {
if (network == null) network = appMgr.getCurrentNetwork();
Collection<CyNetworkView> views = viewMgr.getNetworkViews(network);
nodes = nodeList.getValue();
for (CyNetworkView view : views) {
Set<View<CyNode>> nodeViews = new HashSet<View<CyNode>>();
if (nodes == null || nodes.size() == 0) {
nodeViews = CyLayoutAlgorithm.ALL_NODE_VIEWS;
} else {
for (CyNode node : nodes) nodeViews.add(view.getNodeView(node));
}
insertTasksAfterCurrentTask(
algorithm.createTaskIterator(view, layoutContext, nodeViews, getLayoutAttribute()));
}
}
private Collection<String> getAttributes(boolean node) {
CyNetwork network = applicationManager.getCurrentNetwork();
CyTable table = node ? network.getDefaultNodeTable() : network.getDefaultEdgeTable();
Collection<CyColumn> columns = table.getColumns();
Set<String> attributes =
new TreeSet<String>(
new Comparator<String>() {
public int compare(String s1, String s2) {
return s1.compareToIgnoreCase(s2);
}
});
for (CyColumn column : columns) {
if (!CyIdentifiable.SUID.equals(column.getName())
&& (node || Number.class.isAssignableFrom(column.getType()))) {
attributes.add(column.getName());
}
}
return attributes;
}
public CyNetworkView getCurrentNetworkView() {
CyApplicationManager applicationManager = adapter.getCyApplicationManager();
return applicationManager == null ? null : applicationManager.getCurrentNetworkView();
}
@Tunable(description = "Nodes to layout", context = "nogui")
public NodeList getnodeList() {
if (network == null) network = appMgr.getCurrentNetwork();
nodeList.setNetwork(network);
return nodeList;
}