public static void main(String[] args) throws Exception {
Options options = new Options();
options.parseOptions(args);
TypeSystemDescription typeSystem =
TypeSystemDescriptionFactory.createTypeSystemDescription(
"uimaTypes.vpdmf-triage", "edu.isi.bmkeg.skm.cleartk.TypeSystem");
CollectionReader cr =
CollectionReaderFactory.createCollectionReader(
TriageScoreCollectionReader.class, typeSystem,
TriageScoreCollectionReader.TRIAGE_CORPUS_NAME, options.triageCorpus,
TriageScoreCollectionReader.TARGET_CORPUS_NAME, options.targetCorpus,
TriageScoreCollectionReader.LOGIN, options.login,
TriageScoreCollectionReader.PASSWORD, options.password,
TriageScoreCollectionReader.DB_URL, options.dbName,
TriageScoreCollectionReader.WORKING_DIRECTORY, options.workingDirectory,
TriageScoreCollectionReader.SKIP_UNKNOWNS, true);
AggregateBuilder builder = new AggregateBuilder();
builder.add(SentenceAnnotator.getDescription()); // Sentence segmentation
builder.add(TokenAnnotator.getDescription()); // Tokenization
// It would be better to write into the preprocessed instances the whole token
// (skip stemming for now) and do Stemming while processing instances if desired.
// So the instance processors can have both features, tokens and stems [MT].
//
// builder.add(DefaultSnowballStemmer.getDescription("English")); // Stemming
// The simple document classification annotator
String triageCorpusName = options.triageCorpus;
String targetCorpusName = options.targetCorpus;
triageCorpusName = triageCorpusName.replaceAll("\\s+", "_");
triageCorpusName = triageCorpusName.replaceAll("\\/", "_");
targetCorpusName = targetCorpusName.replaceAll("\\s+", "_");
targetCorpusName = targetCorpusName.replaceAll("\\/", "_");
String dirPath =
options.dir.getPath() + "/baseDir/" + targetCorpusName + "/" + triageCorpusName;
builder.add(
AnalysisEngineFactory.createPrimitiveDescription(
SimpleOneLinePerDocWriter.class, SimpleOneLinePerDocWriter.PARAM_DIR_PATH, dirPath));
// ///////////////////////////////////////////
// Run pipeline to create training data file
// ///////////////////////////////////////////
try {
SimplePipeline.runPipeline(cr, builder.createAggregateDescription());
} catch (Exception e) {
e.printStackTrace();
}
}
@Override
public synchronized void process(JCas jCas) throws AnalysisEngineProcessException {
super.process(jCas);
}
