@Test
public void testFitsUndefinedHdu4() throws Exception {
Fits fits1 = makeAsciiTable();
fits1.read();
byte[] undefinedData = new byte[1000];
for (int index = 0; index < undefinedData.length; index++) {
undefinedData[index] = (byte) index;
}
Data data = UndefinedHDU.encapsulate(undefinedData);
Header header = new Header();
header.pointToData(data);
fits1.addHDU(FitsFactory.hduFactory(header, data));
BufferedDataOutputStream os =
new BufferedDataOutputStream(new FileOutputStream("target/UndefindedHDU4.fits"));
fits1.write(os);
os.close();
Fits fits2 = new Fits("target/UndefindedHDU4.fits");
BasicHDU<?>[] hdus = fits2.read();
byte[] rereadUndefinedData =
(byte[]) ((UndefinedData) hdus[hdus.length - 1].getData()).getData();
Assert.assertArrayEquals(undefinedData, rereadUndefinedData);
ByteArrayOutputStream out = new ByteArrayOutputStream();
hdus[hdus.length - 1].info(new PrintStream(out));
String undefinedInfo = new String(out.toByteArray());
Assert.assertTrue(undefinedInfo.indexOf("Apparent size:1000") >= 0);
}
/**
* this test is only for manual usage with enough memory allocated.
*
* @throws Exception
*/
@Test
@Ignore
public void testVeryBigDataFiles() throws Exception {
Fits f = new Fits();
ImageData data = new ImageData(new float[50000][50000]);
Header manufactureHeader = ImageHDU.manufactureHeader(data);
f.addHDU(FitsFactory.hduFactory(manufactureHeader, data));
BufferedFile bf = new BufferedFile("target/big.fits", "rw");
f.write(bf);
System.out.println(Arrays.toString(ArrayFuncs.getDimensions(f.getHDU(0).getData().getData())));
f = new Fits("target/big.fits");
System.out.println(Arrays.toString(ArrayFuncs.getDimensions(f.getHDU(0).getData().getData())));
}
@Test
public void testFitsUndefinedHdu3() throws Exception {
Fits fits1 = makeAsciiTable();
fits1.read();
byte[] undefinedData = new byte[1000];
for (int index = 0; index < undefinedData.length; index++) {
undefinedData[index] = (byte) index;
}
Data data = UndefinedHDU.encapsulate(undefinedData);
Header header = new Header(data);
Cursor<String, HeaderCard> iter = header.iterator();
String[] headers = new String[header.getNumberOfCards() - 1];
int index = 0;
while (iter.hasNext()) {
HeaderCard headerCard = iter.next();
// the EXTEND key will be deleted later on because the header is no
// primary header so don't use it
if (!headerCard.getKey().equals("EXTEND")) {
headers[index++] = headerCard.toString();
}
}
Header newHeader = new Header(headers);
for (index = 0; index < headers.length; index++) {
Assert.assertEquals(header.getCard(index), newHeader.getCard(index));
}
fits1.addHDU(FitsFactory.hduFactory(newHeader, data));
BufferedDataOutputStream os =
new BufferedDataOutputStream(new FileOutputStream("target/UndefindedHDU3.fits"));
fits1.write(os);
os.close();
Fits fits2 = new Fits("target/UndefindedHDU3.fits");
BasicHDU[] hdus = fits2.read();
for (index = 0; index < headers.length; index++) {
Assert.assertEquals(header.getCard(index), hdus[5].getHeader().getCard(index));
}
}
@Test
public void testFitsUndefinedHdu5() throws Exception {
Header head = new Header();
head.setXtension("UNKNOWN");
head.setBitpix(BasicHDU.BITPIX_BYTE);
head.setNaxes(1);
head.addValue("NAXIS1", 1000, null);
head.addValue("PCOUNT", 0, null);
head.addValue("GCOUNT", 2, null);
UndefinedHDU hdu = (UndefinedHDU) FitsFactory.hduFactory(head);
byte[] data = (byte[]) hdu.getData().getData();
Assert.assertEquals(2000, data.length);
Arrays.fill(data, (byte) 1);
BufferedFile buf = new BufferedFile("target/testFitsUndefinedHdu5", "rw");
hdu.write(buf);
buf.close();
Arrays.fill(data, (byte) 2);
buf = new BufferedFile("target/testFitsUndefinedHdu5", "rw");
hdu.read(buf);
data = (byte[]) hdu.getData().getData();
buf.close();
Assert.assertEquals((byte) 1, data[0]);
}