private List<Test> filterTests(List<Test> tests, TestType gssTT) { List<Test> filteredTest = new ArrayList<Test>(); for (Test test : tests) { if (test.getAnalysis() != null && Equals.isSameTestType(gssTT, test.getTestType())) filteredTest.add(test); } return filteredTest; }
public void loadTable( Collection<String> drugClasses, boolean showMutations, boolean showAllAlgorithms, Set<TestResult> testResults, TestType gssTestType) { clear(); if (gssTestType == null) { return; } Transaction t = RegaDBMain.getApp().createTransaction(); List<DrugClass> sortedDrugClasses_ = t.getDrugClassesSortedOnResistanceRanking(); // drug names - column position HashMap<String, Integer> algoColumn = new HashMap<String, Integer>(); int col = 0; getElementAt(0, col).addWidget(new WText("")); col = getColumnCount(); getElementAt(0, col).addWidget(new WText("")); int maxWidth = 0; for (Test test : getAlgorithms(t, gssTestType, showAllAlgorithms)) { col = getColumnCount(); getElementAt(0, col).addWidget(new TableHeader(test.getDescription())); getElementAt(0, col).setStyleClass("column-title"); algoColumn.put(test.getDescription(), col); maxWidth += test.getDescription().length(); } // drug names - row position HashMap<String, Integer> drugColumn = new HashMap<String, Integer>(); List<DrugGeneric> genericDrugs; int row; boolean firstGenericDrugInThisClass; for (DrugClass dc : sortedDrugClasses_) { if (!drugClasses.contains(dc.getClassId())) continue; genericDrugs = t.getDrugGenericSortedOnResistanceRanking(dc); firstGenericDrugInThisClass = true; for (DrugGeneric dg : genericDrugs) { row = getRowCount(); if (firstGenericDrugInThisClass) { getElementAt(row, 0).addWidget(new TableHeader(dc.getClassId() + ":")); firstGenericDrugInThisClass = false; getElementAt(row, 0).setStyleClass("form-label-area"); } getElementAt(row, 1).addWidget(new TableHeader(dg.getGenericId())); drugColumn.put(dg.getGenericId(), row); getElementAt(row, 1).setStyleClass("form-label-area"); } } ViralIsolateFormConfig config = RegaDBSettings.getInstance().getInstituteConfig().getViralIsolateFormConfig(); // clear table for (int i = 1; i < getRowCount(); i++) { for (int j = 2; j < getColumnCount(); j++) { ViralIsolateFormUtils.putResistanceTableResult( null, getElementAt(i, j), config, false, showMutations); } } Integer colN; Integer rowN; for (TestResult tr : testResults) { if (tr.getTest().getAnalysis() != null && Equals.isSameTestType(gssTestType, tr.getTest().getTestType())) { if (!drugClasses.contains(tr.getDrugGeneric().getDrugClass().getClassId())) continue; colN = algoColumn.get(tr.getTest().getDescription()); rowN = drugColumn.get(ViralIsolateFormUtils.getFixedGenericId(tr)); if (colN != null && rowN != null) { ViralIsolateFormUtils.putResistanceTableResult( tr, getElementAt(rowN, colN), config, false, showMutations); } } } }