private void addArticleInformation(Map<String, String> fields, List<Object> content) {
for (Object object : content) {
if (object instanceof Journal) {
Journal journal = (Journal) object;
putIfValueNotNull(fields, FieldName.JOURNAL, journal.getTitle());
ISSN issn = journal.getISSN();
putIfValueNotNull(fields, FieldName.ISSN, issn.getContent());
JournalIssue journalIssue = journal.getJournalIssue();
putIfValueNotNull(fields, FieldName.VOLUME, journalIssue.getVolume());
putIfValueNotNull(fields, FieldName.ISSUE, journalIssue.getIssue());
addPubDate(fields, journalIssue.getPubDate());
} else if (object instanceof ArticleTitle) {
ArticleTitle articleTitle = (ArticleTitle) object;
fields.put(FieldName.TITLE, StringUtil.stripBrackets(articleTitle.getContent().toString()));
} else if (object instanceof Pagination) {
Pagination pagination = (Pagination) object;
addPagination(fields, pagination);
} else if (object instanceof ELocationID) {
ELocationID eLocationID = (ELocationID) object;
addElocationID(fields, eLocationID);
} else if (object instanceof Abstract) {
Abstract abs = (Abstract) object;
addAbstract(fields, abs);
} else if (object instanceof AuthorList) {
AuthorList authors = (AuthorList) object;
handleAuthors(fields, authors);
}
}
}
private void parseBookArticle(PubmedBookArticle currentArticle, List<BibEntry> bibItems) {
Map<String, String> fields = new HashMap<>();
if (currentArticle.getBookDocument() != null) {
BookDocument bookDocument = currentArticle.getBookDocument();
fields.put("pmid", bookDocument.getPMID().getContent());
if (bookDocument.getDateRevised() != null) {
DateRevised dateRevised = bookDocument.getDateRevised();
addDateRevised(fields, dateRevised);
}
if (bookDocument.getAbstract() != null) {
Abstract abs = bookDocument.getAbstract();
addAbstract(fields, abs);
}
if (bookDocument.getPagination() != null) {
Pagination pagination = bookDocument.getPagination();
addPagination(fields, pagination);
}
if (bookDocument.getSections() != null) {
ArrayList<String> result = new ArrayList<>();
Sections sections = bookDocument.getSections();
for (Section section : sections.getSection()) {
for (Serializable content : section.getSectionTitle().getContent()) {
if (content instanceof String) {
result.add((String) content);
}
}
}
fields.put("sections", join(result, "; "));
}
if (bookDocument.getKeywordList() != null) {
addKeyWords(fields, bookDocument.getKeywordList());
}
if (bookDocument.getContributionDate() != null) {
addContributionDate(fields, bookDocument.getContributionDate());
}
if (bookDocument.getPublicationType() != null) {
List<String> result = new ArrayList<>();
for (PublicationType type : bookDocument.getPublicationType()) {
if (type.getContent() != null) {
result.add(type.getContent());
}
}
fields.put("pubtype", join(result, ", "));
}
if (bookDocument.getArticleTitle() != null) {
ArticleTitle articleTitle = bookDocument.getArticleTitle();
ArrayList<String> titles = new ArrayList<>();
for (Serializable content : articleTitle.getContent()) {
if (content instanceof String) {
titles.add((String) content);
}
}
fields.put("article", join(titles, ", "));
}
if (bookDocument.getBook() != null) {
addBookInformation(fields, bookDocument.getBook());
}
}
if (currentArticle.getPubmedBookData() != null) {
PubmedBookData bookData = currentArticle.getPubmedBookData();
putIfValueNotNull(fields, "pubstatus", bookData.getPublicationStatus());
}
BibEntry entry = new BibEntry(IdGenerator.next(), "article");
entry.setField(fields);
bibItems.add(entry);
}
