int[] getImgAsInts(final Img<IntType> img) {
final RandomAccess<IntType> a = img.randomAccess();
final int N = (int) img.size();
final int[] data = new int[N];
final long[] dim = new long[img.numDimensions()];
final long[] pos = new long[img.numDimensions()];
img.dimensions(dim);
for (int i = 0; i < N; ++i) {
IntervalIndexer.indexToPosition(i, dim, pos);
a.setPosition(pos);
data[i] = a.get().get();
}
return data;
}
/** Makes sure input is okay and creates output image */
@Override
public boolean checkInput() {
final Img inputImage = dataset.getImgPlus(); // TODO - raw type required
// here
inputDimensions = new long[inputImage.numDimensions()];
inputImage.dimensions(inputDimensions);
final long[] outputDimensions = flipper.calcOutputDimensions(inputDimensions);
outputImage = inputImage.factory().create(outputDimensions, inputImage.firstElement());
return true;
}