/** Called to operate on the CharacterData blocks. Returns true if taxa altered */
public boolean operateOnDatas(ListableVector datas, MesquiteTable table) {
boolean anyExcluded = false;
for (int im = 0; im < datas.size(); im++) {
CharacterData data = (CharacterData) datas.elementAt(im);
if (data.numCharsCurrentlyIncluded() < data.getNumChars()) anyExcluded = true;
}
if (anyExcluded) queryOptions();
if (getProject() != null) getProject().incrementProjectWindowSuppression();
for (int im = 0; im < datas.size(); im++) {
CharacterData data = (CharacterData) datas.elementAt(im);
CharacterData starter = data.makeCharacterData(data.getMatrixManager(), data.getTaxa());
starter.addToFile(
getProject().getHomeFile(), getProject(), findElementManager(CharacterData.class));
boolean success =
starter.concatenate(data, false, duplicateExcludedCharacters, false, false, false, false);
if (success) {
starter.setName(datas.getUniqueName(data.getName() + " (duplicate)"));
}
}
if (getProject() != null) getProject().decrementProjectWindowSuppression();
resetAllMenuBars();
return true;
}
/*.................................................................................................................*/
void zapData(CharacterData data, int it) {
Taxa taxa = data.getTaxa();
if (it < 0 || it >= taxa.getNumTaxa()) return;
Associable tInfo = data.getTaxaInfo(false);
int myColumn = -1;
if (getEmployer() instanceof ListModule) {
myColumn = ((ListModule) getEmployer()).getMyColumn(this);
}
if (tInfo != null) tInfo.deassignAssociated(it);
for (int ic = 0; ic < data.getNumChars(); ic++) data.deassign(ic, it);
data.notifyListeners(this, new Notification(MesquiteListener.DATA_CHANGED));
outputInvalid();
parametersChanged();
}