public MiniScroll(
MesquiteCommand command,
boolean stacked,
boolean horizontal,
long currentValue,
long minValue,
long maxValue,
String itemName) {
this.currentValue = currentValue;
this.itemName = itemName;
this.minValue = minValue;
this.maxValue = maxValue;
this.stacked = stacked;
this.horizontal = horizontal;
this.command = command;
if (!horizontal && !stacked) {
totalWidth = textBoxWidth + 10;
totalHeight = textBoxHeight + 40 + EnterButton.MIN_DIMENSION + 2;
} else if (stacked) {
totalWidth = textBoxWidth + EnterButton.MIN_DIMENSION + 2;
totalHeight = textBoxHeight + 28;
} else {
totalWidth = textBoxWidth + 40 + EnterButton.MIN_DIMENSION + 2;
totalHeight = textBoxHeight + 2;
}
setSize(totalWidth, totalHeight);
setLayout(null);
if (this.horizontal) {
add(decrementButton = new MiniScrollButton(this, MiniScrollButton.LEFT, itemName));
add(incrementButton = new MiniScrollButton(this, MiniScrollButton.RIGHT, itemName));
} else {
add(decrementButton = new MiniScrollButton(this, MiniScrollButton.DOWN, itemName));
add(incrementButton = new MiniScrollButton(this, MiniScrollButton.UP, itemName));
}
add(enterButton = new EnterButton(this, horizontal || stacked));
add(tf = new ScrollTextField(this, Long.toString(currentValue), 2));
tf.setVisible(false);
tf.addActionListener(this);
tf.addTextListener(this);
tf.setSize(5, 5);
tf.setLocation(5, 5);
add(dummy = new TextField(""));
dummy.setEditable(false);
dummy.setSize(0, 0);
dummy.setBackground(bg);
dummy.setLocation(0, 0);
decrementButton.setVisible(false);
incrementButton.setVisible(false);
enterButton.setVisible(false);
if (horizontal) {
if (stacked) {
tf.setSize(1, 1);
decrementButton.setLocation(2, arrowHeight);
incrementButton.setLocation(totalWidth - 20, arrowHeight);
} else {
tf.setSize(1, 1);
decrementButton.setLocation(0, 2);
tf.setLocation(decrementButton.getBounds().x + decrementButton.getBounds().width, 2);
incrementButton.setLocation(
tf.getBounds().x + tf.getBounds().width + EnterButton.MIN_DIMENSION + 1, 2);
}
} else {
if (stacked) {
tf.setSize(1, 1);
decrementButton.setLocation(2, arrowHeight);
incrementButton.setLocation(totalWidth - 26, arrowHeight);
} else {
tf.setSize(1, 1);
incrementButton.setLocation(0, 0);
tf.setLocation(0, decrementButton.getBounds().height + 6);
decrementButton.setLocation(
0, tf.getBounds().y + tf.getBounds().height + EnterButton.MIN_DIMENSION + 1);
}
}
tf.setBackground(bg);
setBackground(bg);
enterButton.setEnabled(false);
decrementButton.setEnabled(currentValue > minValue);
incrementButton.setEnabled(currentValue < maxValue);
}
boolean showOptions() {
MesquiteInteger buttonPressed = new MesquiteInteger(1);
ExtensibleDialog queryDialog =
new ExtensibleDialog(containerOfModule(), "Reinterpret Node Labels", buttonPressed);
queryDialog.addLargeOrSmallTextLabel(
"Some programs write information as node labels; e.g. MrBayes writes posterior probabilities as if they were the names of clades (= node labels)."
+ "\nHere you can reintepret such information.");
// name for information (e.g., "posteriorProbability", "bootstrapFrequency")
queryDialog.addLabel(
"Name for information? (e.g., \"posteriorProbability\", \"bootstrapFrequency\")",
Label.LEFT);
TextField nameField = queryDialog.addTextField(name, 30);
queryDialog.addHorizontalLine(2);
// where to attach
queryDialog.addLabel("Applies to branch or node?", Label.LEFT);
String[] where =
new String[] {
"Information applies to branch (e.g., posterior probability, bootstrap frequency)",
"Information applies to node (e.g., clade name)"
};
RadioButtons whereButtons = queryDialog.addRadioButtons(where, 0);
queryDialog.addLabel(
"(This determines how the information will behave when the tree is rerooted.)", Label.LEFT);
queryDialog.addHorizontalLine(2);
// how to treat
queryDialog.addLabel("Number or text?", Label.LEFT);
String[] what =
new String[] {
"Treat as number (e.g., posterior probability)", "Treat as text (e.g., clade name)"
};
RadioButtons whatButtons = queryDialog.addRadioButtons(what, 0);
queryDialog.addHorizontalLine(2);
// delete internal node labels after reinterpreting?
Checkbox delete =
queryDialog.addCheckBox("Delete internal node labels after reinterpreting?", deleteAfter);
queryDialog.addHorizontalLine(2);
queryDialog.completeAndShowDialog(true);
boolean ok = (queryDialog.query() == 0);
if (ok) {
if (StringUtil.blank(nameField.getText())) {
ok = false;
alert("A name must be entered for the information");
} else {
name = nameField.getText();
nameRef = NameReference.getNameReference(name);
appliesToBranch = whereButtons.getValue() == 0;
isNumber = whatButtons.getValue() == 0;
deleteAfter = delete.getState();
}
}
queryDialog.dispose();
return ok;
}
