public ThermoResult correctMeltingResults(Environment environment) {
double Tm = correctTemperature(environment);
environment.setResult(Tm);
return environment.getResult();
}
public ThermoResult correctMeltingResults(Environment environment) {
OptionManagement.logMessage("\n The sodium correction is");
OptionManagement.logMethodName(methodName);
OptionManagement.logMessage(temperatureCorrection);
double NaEq = Helper.computesNaEquivalent(environment);
double Fgc = environment.getSequences().computesPercentGC() / 100.0;
double TmInverse =
1.0 / (environment.getResult().getTm() + 273.15)
+ (3.85 * Fgc - 6.18) * 1 / 100000 * Math.log(NaEq);
environment.setResult((1.0 / TmInverse) - 273.15);
return environment.getResult();
}
