/* @see loci.formats.FormatReader#initFile(String) */ protected void initFile(String id) throws FormatException, IOException { super.initFile(id); reader = new ImageReader(); reader.setMetadataOptions(getMetadataOptions()); reader.setMetadataFiltered(isMetadataFiltered()); reader.setOriginalMetadataPopulated(isOriginalMetadataPopulated()); reader.setNormalized(isNormalized()); reader.setMetadataStore(getMetadataStore()); // NB: We need a raw handle on the ZIP data itself, not a ZipHandle. IRandomAccess rawHandle = Location.getHandle(id, false, false); in = new RandomAccessInputStream(rawHandle, id); ZipInputStream zip = new ZipInputStream(in); while (true) { ZipEntry ze = zip.getNextEntry(); if (ze == null) break; ZipHandle handle = new ZipHandle(id, ze); Location.mapFile(ze.getName(), handle); mappedFiles.add(ze.getName()); } ZipHandle base = new ZipHandle(id); reader.setId(base.getEntryName()); metadataStore = reader.getMetadataStore(); core = reader.getCoreMetadata(); metadata = reader.getGlobalMetadata(); base.close(); }