// public method that checks for existance of children
public boolean HasChildren(String tsn) {
String temp = "SELECT tsn from Tree where parent_tsn='" + tsn + "'";
if (lrank.compareTo("0") != 0 && lrank.compareTo("7") != 0)
temp = temp + " AND rank_id<=" + lrank;
System.out.println(temp);
int numberOfRows = 0;
boolean flag = false;
try {
result = statement.executeQuery(temp);
metadata = result.getMetaData();
if (result.last()) numberOfRows = result.getRow();
result.first();
if (numberOfRows > 0 && metadata.getColumnCount() > 0) flag = true;
} catch (SQLException sql) {
sql.printStackTrace();
System.exit(1);
}
return flag;
} // end of method HasChildren
public SingleNameReport(WritableWorkbook workbook, Statement new_statement, String[] arguments) {
String main_tsn = "";
String main_rank = "";
String main_kingdom = "";
row = 0;
try {
statement = new_statement;
func = new AdditionalFunctions(statement);
copy = workbook;
kingdom = arguments[0];
hrank = arguments[1];
lrank = arguments[2];
scientificName = arguments[3];
date_from = arguments[4];
date_to = arguments[5];
user = arguments[6];
String temp = "";
temp =
"SELECT tsn,rank_id,kingdom_id from Tree where scientificName='" + scientificName + "'";
System.out.println(temp);
result = statement.executeQuery(temp);
metadata = result.getMetaData();
int numberOfRows = 0;
int hrankVal = Integer.parseInt(hrank);
int main_rankVal = 0;
if (result.last()) numberOfRows = result.getRow();
result.first();
if (numberOfRows > 0 && metadata.getColumnCount() > 0) {
main_tsn = result.getString(1);
main_rank = result.getString(2);
main_rankVal = Integer.parseInt(main_rank);
main_kingdom = result.getString(3);
}
if (HasChildren(main_tsn) == true) FindChildInformation(main_tsn, arguments, func);
FileInFrontPage frontPage = new FileInFrontPage(copy, statement, arguments);
copy.write();
copy.close();
} catch (Exception e) {
e.printStackTrace();
System.exit(1);
}
} // end of constructor
// public method to extract and write the Publication information
public static void WritePublication(String publicationId, int rowNum) {
WritableSheet sheet2 = copy.getSheet(1);
try {
String query =
"SELECT address,author,publicationTitle,chapter,edition,editor,month,day,note,number,publisher,"
+ "series,title,volume,year,isbn,issn,pages FROM Publication WHERE id="
+ publicationId;
System.out.println(query);
ResultSet result_query = statement.executeQuery(query);
ResultSetMetaData metadata_query = result_query.getMetaData();
int numberOfRows = 0;
if (result_query.last()) numberOfRows = result_query.getRow();
result_query.first();
if (numberOfRows > 0 && metadata_query.getColumnCount() > 0) {
String aut_edi = result_query.getString(2);
System.out.println("autor is " + aut_edi);
if (result_query.getString(6).compareTo("") != 0)
aut_edi = aut_edi + " / " + result_query.getString(6) + ",eds.";
Label label = new Label(7, rowNum, aut_edi);
sheet2.addCell(label);
label = new Label(8, rowNum, result_query.getString(13));
sheet2.addCell(label);
String publication_name = result_query.getString(3);
if (result_query.getString(12).compareTo("") != 0)
publication_name = publication_name + ", ser. " + result_query.getString(12);
if (result_query.getString(14).compareTo("0") != 0)
publication_name = publication_name + ", vol. " + result_query.getString(14);
if (result_query.getString(10).compareTo("0") != 0)
publication_name = publication_name + ",no. " + result_query.getString(10);
label = new Label(9, rowNum, publication_name);
sheet2.addCell(label);
label = new Label(12, rowNum, result_query.getString(11));
sheet2.addCell(label);
label = new Label(13, rowNum, result_query.getString(1));
sheet2.addCell(label);
label = new Label(15, rowNum, result_query.getString(9));
sheet2.addCell(label);
label = new Label(16, rowNum, result_query.getString(16));
sheet2.addCell(label);
label = new Label(17, rowNum, result_query.getString(17));
sheet2.addCell(label);
label = new Label(14, rowNum, result_query.getString(18));
sheet2.addCell(label);
String date = result_query.getString(15);
String month = "Jan";
System.out.println("month is " + result_query.getString(7));
if (result_query.getString(7).compareTo("") != 0) month = result_query.getString(7);
month = func.ConvertMonth(month);
date = month + "/" + date;
String day = "01";
if (result_query.getString(8).compareTo("0") != 0) day = result_query.getString(8);
if (day.length() == 1) day = "0" + day;
date = day + "/" + date;
label = new Label(10, rowNum, date);
sheet2.addCell(label);
label = new Label(11, rowNum, date);
sheet2.addCell(label);
}
} catch (Exception e) {
e.printStackTrace();
System.exit(1);
}
} // end of WritePublication
// public method to find child information
public void FindChildInformation(String tsn, String[] arguments, AdditionalFunctions func) {
WritableSheet sheet2 = copy.getSheet(1);
Label label = null;
String children[] = null;
String temp = "", current_tsn = "", dateCreated = "";
int dateCheck = 1;
temp = "SELECT distinct tsn from Tree where parent_tsn='" + tsn + "'";
try {
result = statement.executeQuery(temp);
metadata = result.getMetaData();
int numberOfRows = 0;
if (result.last()) numberOfRows = result.getRow();
if (numberOfRows > 0 && metadata.getColumnCount() > 0) {
result.first();
children = new String[numberOfRows];
for (int j = 0; j < numberOfRows; j++) {
children[j] = result.getString(1);
result.next();
}
}
for (int j = 0; j < numberOfRows; j++) {
int current_tsnId = Integer.parseInt(children[j]);
if (current_tsnId >= 999000000) {
temp =
"SELECT distinct Tree.tsn,unit_name1,unit_name2,unit_name3,unit_name4,scientificName,`usage`,"
+ "taxon_author,parent_tsn,rank_name, pages, publicationId, userId, dateCreated, nameType FROM Tree,"
+ " BaseObject, TaxonConcepts, TaxonAuthors,TaxonUnitTypes"
+ " WHERE Tree.tsn=TaxonConcepts.tsn AND Tree.tsn='"
+ current_tsnId
+ "' AND "
+ "BaseObject.id=TaxonConcepts.id AND TaxonAuthors.taxon_author_id=Tree.taxon_author_id AND "
+ "Tree.rank_id=TaxonUnitTypes.rank_id";
System.out.println(temp);
result = statement.executeQuery(temp);
metadata = result.getMetaData();
int RowNumber = 0;
if (result.last()) RowNumber = result.getRow();
if (RowNumber > 0 && metadata.getColumnCount() > 0) {
current_tsn = result.getString(1);
dateCreated = result.getString(14);
DateFormat df = new SimpleDateFormat("yyyy-MM-dd");
Date d1 = df.parse(dateCreated);
Date d2 = null;
if (date_from.compareTo("all") != 0) {
d2 = df.parse(date_from);
if (d2.before(d1) || d2.equals(d1)) dateCheck = 1;
else dateCheck = 0;
}
if (date_to.compareTo("today") != 0) {
d2 = df.parse(date_to);
if (d1.before(d2) || d1.equals(d2)) dateCheck = 1;
else dateCheck = 0;
}
if (result.getString(7).compareTo("public") == 0
&& result.getString(15).compareTo("Regular scientific name") == 0
&& result.getString(12).compareTo("") != 0
&& dateCheck == 1) {
String scientificName = result.getString(6);
String taxon_author = result.getString(8);
String publicationId = result.getString(12);
for (int k = 0; k < 4; k++) {
if (result.getString(k + 2).compareTo("null") != 0) {
label = new Label(k, row + 1, result.getString(k + 2));
sheet2.addCell(label);
}
}
label = new Label(4, row + 1, taxon_author);
sheet2.addCell(label);
label = new Label(5, row + 1, result.getString(10));
sheet2.addCell(label);
String parent_tsn = result.getString(9);
String userId = result.getString(13);
WritePublication(publicationId, row + 1);
label = new Label(18, row + 1, func.GetSubmitter(userId));
sheet2.addCell(label);
label = new Label(6, row + 1, func.GetParent(parent_tsn));
sheet2.addCell(label);
row = row + 1;
}
}
}
continue;
}
for (int j = 0; j < numberOfRows; j++) {
if (HasChildren(children[j]) == true) FindChildInformation(children[j], arguments, func);
else continue;
}
} catch (Exception e) {
e.printStackTrace();
System.exit(1);
}
} // end of FindChildInformation