public void generateTrackFromLocation(int mousePos, boolean isHorizontal) {
if (!MatrixType.isObservedOrControl(displayOption)) {
MessageUtils.showMessage("This feature is only available for Observed or Control views");
return;
}
// extract the starting position
int binStartPosition = (int) (getXContext().getBinOrigin() + mousePos / getScaleFactor());
if (isHorizontal)
binStartPosition = (int) (getYContext().getBinOrigin() + mousePos / getScaleFactor());
// Initialize default file name
String filename = displayOption == MatrixType.OBSERVED ? "obs" : "ctrl";
filename += isHorizontal ? "_horz" : "_vert";
filename += "_bin" + binStartPosition + "_res" + currentZoom.getBinSize();
filename = cleanUpNumbersInName(filename);
// allow user to customize or change the name
filename = MessageUtils.showInputDialog("Enter a name for the resulting .wig file", filename);
if (filename == null || filename.equalsIgnoreCase("null")) return;
File outputWigFile = new File(DirectoryManager.getHiCDirectory(), filename + ".wig");
MessageUtils.showMessage("Data will be saved to " + outputWigFile.getAbsolutePath());
Chromosome chromosomeForPosition = getXContext().getChromosome();
if (isHorizontal) chromosomeForPosition = getYContext().getChromosome();
safeSave1DTrackToWigFile(chromosomeForPosition, outputWigFile, binStartPosition);
}
public void setSelectedDisplayOption(MatrixType[] options, boolean control) {
if (control) {
MatrixType originalMatrixType = (MatrixType) displayOptionComboBox.getSelectedItem();
displayOptionComboBox.setModel(new DefaultComboBoxModel<MatrixType>(options));
int indx = 0;
for (int i = 0; i < displayOptionComboBox.getItemCount(); i++) {
if (originalMatrixType.equals(displayOptionComboBox.getItemAt(i))) {
indx = i;
break;
}
}
displayOptionComboBox.setSelectedIndex(indx);
} else {
displayOptionComboBox.setModel(new DefaultComboBoxModel<MatrixType>(options));
displayOptionComboBox.setSelectedIndex(0);
}
}