/**
* Used as an alternative to {@link #beginNextSubtask()}. Instead of calling {@link
* #beginNextSubtask()} once after each subtask (except the last), you can instead call
* beginSubTask at the beginning of every subtask including the first.
*/
public void beginSubtask() {
if (numOperations == 0) {
throw new IllegalStateException("This operation has no subtasks");
}
currentSubTaskMessage = "";
if (!beganFirstSubTask) {
beganFirstSubTask = true;
} else {
beginNextSubtask();
}
}
@Override
public List<AnnotatedPluginDocument> performOperation(
AnnotatedPluginDocument[] annotatedDocuments,
ProgressListener progressListener,
Options options)
throws DocumentOperationException {
int PAGE_SIZE = 2;
try {
String query = options.getValueAsString("query");
int count = 0;
InputStream countInput = queryServer("query count " + query);
// Get the response
BufferedReader rd = new BufferedReader(new InputStreamReader(countInput));
String line;
while ((line = rd.readLine()) != null) {
count = Integer.parseInt(line.trim());
}
rd.close();
int numberOfPages = (int) Math.ceil(count / PAGE_SIZE);
CompositeProgressListener composite =
new CompositeProgressListener(progressListener, numberOfPages);
for (int page = 0; page < numberOfPages; page++) {
InputStream inputStream =
queryServer("query page_size " + PAGE_SIZE + " page_number " + page + " text " + query);
File outputFile =
new File(
System.getProperty("user.home")
+ File.separator
+ "traceData"
+ File.separator
+ "part"
+ page
+ ".tgz");
BufferedReader in = new BufferedReader(new InputStreamReader(inputStream));
BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(outputFile));
List<String> ids = new ArrayList<String>();
String line2 = null;
while ((line2 = in.readLine()) != null) {
if (composite.isCanceled()) {
break;
}
System.out.println(line2);
// out.write(n);
ids.add(line2);
}
if (composite.isCanceled()) {
break;
}
in.close();
InputStream tgzIn = queryServer("retrieve_gz all " + StringUtilities.join(", ", ids));
int n;
int byteCount = 0;
while ((n = tgzIn.read()) >= 0) {
byteCount++;
composite.setMessage("Downloaded " + byteCount + " bytes");
if (composite.isCanceled()) {
break;
}
// out.write(n);
}
tgzIn.close();
out.close();
if (composite.isCanceled()) {
break;
}
composite.beginNextSubtask();
break;
// out.close();
}
} catch (IOException ex) {
ex.toString();
ex.printStackTrace();
throw new DocumentOperationException(ex.getMessage(), ex);
}
return Collections.emptyList();
}
/**
* Convenience method to start the next operation AND set a new message.
*
* @param message message to set (will be passed to setMessage()
*/
public void beginNextSubtask(String message) {
beginNextSubtask();
currentSubTaskMessage = message;
setMessage("");
}
