protected boolean split(Object3DGui og) {
if (!(this instanceof NucleusManager) && og.getChannel() instanceof Nucleus) {
if (Core.GUIMode) ij.IJ.log("Cannont split nucleus!");
return false;
}
Object3DGui[] newObjects = og.split(splitRad.getFloatValue(2), splitDist.getFloatValue(5));
if (newObjects.length == 0) {
if (Core.GUIMode) ij.IJ.log("Object couldn't be split");
return false;
}
Object3D[] objs = og.getChannel().getObjects();
int nextLabel = objs[objs.length - 1].getValue() + 1;
for (Object3DGui o : newObjects) {
o.changeLabel(nextLabel);
this.listModel.addElement(o); // TODO le mettre a la fin des objets du channel..
nextLabel++;
}
og.getChannel().getSegmented().updateDisplay();
return true;
}
public void manualSegmentation() {
msChannel = null;
if (currentChannels != null) {
if (!(currentChannels[0] instanceof Nucleus)) {
msChannel = (Structure) currentChannels[0];
} else if (currentChannels.length > 1) {
msChannel = (Structure) currentChannels[1];
}
}
if (msChannel instanceof VirtualStructure) {
return;
}
if (msChannel != null) {
ImageInt seg = msChannel.getSegmented();
ImageHandler raw = msChannel.getFiltered();
if (raw == null) {
if (Core.GUIMode) ij.IJ.log("ERROR: no raw images!");
return;
}
if (seg == null) {
seg =
new ImageShort(
msChannel.getChannelName() + "::Segmented", raw.sizeX, raw.sizeY, raw.sizeZ);
msChannel.setSegmented(seg);
}
seg.show();
raw.show();
manualSpot =
new ManualSpot(raw.getImagePlus(), seg.getImagePlus(), (int) seg.getMax(null) + 1);
manualSpot.setVisible(true);
JButton msClose = manualSpot.jButtonClose;
msClose.addActionListener(
new java.awt.event.ActionListener() {
@Override
public void actionPerformed(java.awt.event.ActionEvent evt) {
if (msChannel != null) {
msChannel.saveOutput();
msChannel.createObjects();
populateObjects();
}
}
});
}
}
private void sort(String key, Object3DGui[] objectsGui, int structureIdx) {
Object3DGui.setAscendingOrger(((ObjectManagerLayout) layout).getAscendingOrder());
HashMap<Integer, BasicDBObject> objects =
Core.getExperiment().getConnector().getObjects(currentNucId, structureIdx);
boolean notFound = false;
for (Object3DGui o : objectsGui) {
BasicDBObject dbo = objects.get(o.getLabel());
if (dbo != null) {
if (dbo.containsField(key)) o.setValue(dbo.getDouble(key));
else {
o.setValue(-1);
notFound = true;
}
}
}
if (notFound)
ij.IJ.log("Warning measurement: " + key + " not found for one or several objects");
Arrays.sort(objectsGui);
}
