/**
* Move to the specified origin (in bins)
*
* @param newBinX new location X
* @param newBinY new location Y
*/
private void moveTo(double newBinX, double newBinY) {
try {
MatrixZoomData zd = getZd();
final double wBins = (superAdapter.getHeatmapPanel().getWidth() / getScaleFactor());
double maxX = zd.getXGridAxis().getBinCount() - wBins;
final double hBins = (superAdapter.getHeatmapPanel().getHeight() / getScaleFactor());
double maxY = zd.getYGridAxis().getBinCount() - hBins;
double x = Math.max(0, Math.min(maxX, newBinX));
double y = Math.max(0, Math.min(maxY, newBinY));
xContext.setBinOrigin(x);
yContext.setBinOrigin(y);
superAdapter.repaint();
} catch (Exception e) {
e.printStackTrace();
}
if (linkedMode) {
broadcastLocation();
}
}
@Override
public void execute(final GUI gui) {
final boolean rt = gui.gprop.invert(GUIProp.FILTERRT);
gui.stop();
// refresh buttons in input bar
gui.refreshControls();
// refresh editor buttons
gui.editor.refreshMark();
final Context ctx = gui.context;
final boolean root = ctx.root();
final Data data = ctx.data();
if (!rt) {
if (!root) {
gui.notify.context(new Nodes(0, data), true, null);
gui.notify.mark(ctx.current(), null);
}
} else {
if (root) {
gui.notify.mark(new Nodes(data), null);
} else {
final Nodes mark = ctx.marked;
ctx.marked = new Nodes(data);
gui.notify.context(mark, true, null);
}
}
}
@Override
public void execute(final GUI gui) {
// skip operation for root context
final Context ctx = gui.context;
if (ctx.root()) return;
// jump to database root
ctx.update();
gui.notify.context(ctx.current(), false, null);
}
@Override
public void execute(final GUI gui) {
final Context ctx = gui.context;
Nodes marked = ctx.marked;
if (marked.size() == 0) {
final int pre = gui.context.focused;
if (pre == -1) return;
marked = new Nodes(pre, ctx.data());
}
gui.notify.context(marked, false, null);
}
public void nameFocusLost(java.awt.event.FocusEvent evt) {
ctxt.saveState = true;
String newName = name.getText(), msg;
while (!Library.validateFileName(newName, false)) {
msg = "The name '" + newName + "' violates the rules for names:";
msg += "\nIt must have 2 to 28 characters.";
msg += "\nYou may not use BackSlash, ForwardSlash, Colon, DoubleQuote";
msg += "\nAsterisk, QuestionMark, LeftAngleBracket, RightAngleBracket,";
msg += "\nor the VerticalBar in a name. TRY AGAIN.";
newName = JOptionPane.showInputDialog(msg);
} // end of harrass-em-until-they-give-a-good-name
name.setText(newName);
if (!newName.equals(ctxt.languageName)) { // Made a change
msg = "Change this context's language name\nto" + newName + "?";
String[] options = {newName, ctxt.languageName};
int choice =
JOptionPane.showOptionDialog(
this,
msg,
"Confirm Changed Language Name",
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE,
null,
options,
options[0]);
if (choice == 0) { // Change is confirmed
ctxt.languageName = newName;
msg =
"Normally, the file name for a context is the same as the language name "
+ "\nfor that context. Change this context's file name\n"
+ "to "
+ newName
+ "?";
options[0] = "Change File Name";
options[1] = "Do Not Change";
choice =
JOptionPane.showOptionDialog(
this,
msg,
"Confirm Correct File Name",
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE,
null,
options,
options[0]);
if (choice == 0) {
Library.userContextName = newName;
if (SIL_Edit.edWin != null && ctxt == Library.contextUnderConstruction) {
SIL_Edit.edWin.chart.changeFileName(newName);
}
}
} // end of Change-is-confirmed
} // end of change-was-made
}
public Matrix getMatrix() {
if (dataset == null) {
// System.err.println("Dataset is null");
return null;
} else if (xContext == null) {
// System.err.println("xContext is null");
return null;
} else if (yContext == null) {
// System.err.println("yContext is null");
return null;
}
return dataset.getMatrix(xContext.getChromosome(), yContext.getChromosome());
}
public int[] getCurrentRegionWindowGenomicPositions() {
// address int overflow or exceeding bound issues
int xEndEdge =
xContext.getGenomicPositionOrigin()
+ (int)
((double) getZoom().getBinSize()
* superAdapter.getHeatmapPanel().getWidth()
/ getScaleFactor());
if (xEndEdge < 0 || xEndEdge > xContext.getChromosome().getLength()) {
xEndEdge = xContext.getChromosome().getLength();
}
int yEndEdge =
yContext.getGenomicPositionOrigin()
+ (int)
((double) getZoom().getBinSize()
* superAdapter.getHeatmapPanel().getHeight()
/ getScaleFactor());
if (yEndEdge < 0 || yEndEdge > yContext.getChromosome().getLength()) {
yEndEdge = yContext.getChromosome().getLength();
}
return new int[] {
xContext.getGenomicPositionOrigin(), xEndEdge, yContext.getGenomicPositionOrigin(), yEndEdge
};
}
@Override
public Boolean dispatch(@NotNull KeyEvent e, @NotNull Context context) {
if (myWrapper == null || myTypeAheadDone.isProcessed()) return null;
myEvents.addAll(context.getQueue());
context.getQueue().clear();
if (isToDispatchToDialogNow(e)) {
return false;
} else {
myEvents.add(e);
return true;
}
}
public String getDefaultLocationDescription() {
String xChr = xContext.getChromosome().getName();
String yChr = yContext.getChromosome().getName();
if (!(xChr.toLowerCase().contains("chr"))) xChr = "chr" + xChr;
if (!(yChr.toLowerCase().contains("chr"))) yChr = "chr" + yChr;
return xChr
+ "@"
+ (long) (xContext.getBinOrigin() * currentZoom.getBinSize())
+ "_"
+ yChr
+ "@"
+ (long) (yContext.getBinOrigin() * currentZoom.getBinSize());
}
private void setChromosomesFromBroadcast(String chrXName, String chrYName) {
if (!chrXName.equals(xContext.getChromosome().getName())
|| !chrYName.equals(yContext.getChromosome().getName())) {
Chromosome chrX = HiCFileTools.getChromosomeNamed(chrXName, chromosomes);
Chromosome chrY = HiCFileTools.getChromosomeNamed(chrYName, chromosomes);
if (chrX == null || chrY == null) {
// log.info("Most probably origin is a different species saved location or sync/link between
// two different species maps.");
return;
}
this.xContext = new Context(chrX);
this.yContext = new Context(chrY);
superAdapter.setSelectedChromosomesNoRefresh(chrX, chrY);
refreshEigenvectorTrackIfExists();
}
}
public void update() {
nUpdate();
if (!isFocused && parent != null && parent_focused.compareAndSet(true, false)) {
setFocus(getHwnd());
}
if (redoMakeContextCurrent) {
redoMakeContextCurrent = false;
/**
* WORKAROUND: Making the context current (redundantly) when the window is maximized helps
* some gfx cards recover from fullscreen
*/
try {
Context context = ((DrawableLWJGL) Display.getDrawable()).getContext();
if (context != null && context.isCurrent()) context.makeCurrent();
} catch (LWJGLException e) {
LWJGLUtil.log("Exception occurred while trying to make context current: " + e);
}
}
}
public String getLocationDescription() {
String xChr = xContext.getChromosome().getName();
String yChr = yContext.getChromosome().getName();
if (!(xChr.toLowerCase().contains("chr"))) xChr = "chr" + xChr;
if (!(yChr.toLowerCase().contains("chr"))) yChr = "chr" + yChr;
return "setlocation "
+ xChr
+ " "
+ yChr
+ " "
+ currentZoom.getUnit().toString()
+ " "
+ currentZoom.getBinSize()
+ " "
+ xContext.getBinOrigin()
+ " "
+ yContext.getBinOrigin()
+ " "
+ getScaleFactor();
}
@Override
public void execute(final GUI gui) {
// skip operation for root context
final Context ctx = gui.context;
if (ctx.root()) return;
// check if all nodes are document nodes
boolean doc = true;
final Data data = ctx.data();
for (final int pre : ctx.current().pres) doc &= data.kind(pre) == Data.DOC;
if (doc) {
// if yes, jump to database root
ctx.update();
gui.notify.context(ctx.current(), false, null);
} else {
// otherwise, jump to parent nodes
gui.execute(new Cs(".."));
}
}
@Override
public void execute(final GUI gui) {
final Context ctx = gui.context;
final Nodes n = ctx.marked;
ctx.copied = new Nodes(n.pres, n.data);
}
/**
* ************************************************************* Official Method for setting the
* zoom and location for heatmap DO NOT IMPLEMENT A NEW FUNCTION Make the necessary
* customizations, then call this function
* *************************************************************
*
* @param newZoom
* @param genomeX
* @param genomeY
* @param scaleFactor (pass -1 if scaleFactor should be calculated)
* @return
*/
public boolean unsafeActuallySetZoomAndLocation(
String chrXName,
String chrYName,
HiCZoom newZoom,
int genomeX,
int genomeY,
double scaleFactor,
boolean resetZoom,
ZoomCallType zoomCallType,
boolean allowLocationBroadcast) {
if (dataset == null) return false; // No data in view
// Check this zoom operation is possible, if not, fail it here:
// if (superAdapter.testNewZoom(newZoom))
// {
// return false;
// }
// String chr1OriginalName = xContext.getChromosome().getName();
// String chr2OriginalName = yContext.getChromosome().getName();
if (chrXName.length() > 0 && chrYName.length() > 0) {
setChromosomesFromBroadcast(chrXName, chrYName);
// We might end with All->All view, make sure normalization state is updates accordingly...
superAdapter.getMainViewPanel().setNormalizationDisplayState(superAdapter.getHiC());
}
if (newZoom == null) {
System.err.println("Invalid zoom " + newZoom);
}
Chromosome chr1 = xContext.getChromosome();
Chromosome chr2 = yContext.getChromosome();
final Matrix matrix = dataset.getMatrix(chr1, chr2);
if (matrix == null) {
superAdapter.launchGenericMessageDialog(
"Sorry, this region is not available", "Matrix unavailable", JOptionPane.WARNING_MESSAGE);
return false;
}
MatrixZoomData newZD = matrix.getZoomData(newZoom);
if (HiCFileTools.isAllChromosome(chr1)) {
newZD = matrix.getFirstZoomData(Unit.BP);
}
if (newZD == null) {
superAdapter.launchGenericMessageDialog(
"Sorry, this zoom is not available", "Zoom unavailable", JOptionPane.WARNING_MESSAGE);
return false;
}
/* TODO Undo Zoom implementation mss2 _UZI
if(currentZoom != null) {
tempZoomState = new ZoomState(chr1OriginalName, chr2OriginalName, currentZoom.clone(), (int) xContext.getBinOrigin(),
(int) yContext.getBinOrigin(), getScaleFactor(), resetZoom, ZoomCallType.GOTO);
}
*/
currentZoom = newZoom;
xContext.setZoom(currentZoom);
yContext.setZoom(currentZoom);
if (scaleFactor > 0) {
setScaleFactor(scaleFactor);
} else {
int maxBinCount =
Math.max(newZD.getXGridAxis().getBinCount(), newZD.getYGridAxis().getBinCount());
double defaultScaleFactor =
Math.max(
1.0, (double) superAdapter.getHeatmapPanel().getMinimumDimension() / maxBinCount);
setScaleFactor(defaultScaleFactor);
}
int binX = newZD.getXGridAxis().getBinNumberForGenomicPosition(genomeX);
int binY = newZD.getYGridAxis().getBinNumberForGenomicPosition(genomeY);
switch (zoomCallType) {
case INITIAL:
case STANDARD:
center(binX, binY);
break;
case DRAG:
xContext.setBinOrigin(binX);
yContext.setBinOrigin(binY);
break;
case DIRECT:
xContext.setBinOrigin(genomeX);
yContext.setBinOrigin(genomeY);
break;
}
// Notify HeatmapPanel render that zoom has changed. Render should update zoom slider once with
// previous range values
setZoomChanged();
if (resetZoom) {
superAdapter.updateAndResetZoom(newZoom);
} else {
superAdapter.updateZoom(newZoom);
}
superAdapter.refresh();
if (linkedMode && allowLocationBroadcast) {
broadcastLocation();
}
/*
TODO Undo Zoom implementation mss2 _UZI
if(zoomCallType == ZoomCallType.INITIAL || tempZoomState == null || chrXName.equals(Globals.CHR_ALL) || chrYName.equals(Globals.CHR_ALL)
|| tempZoomState.chr1Name.equals(Globals.CHR_ALL) || tempZoomState.chr2Name.equals(Globals.CHR_ALL)){
canRedoZoomChange = false;
canUndoZoomChange = false;
}
else {
// defauts for a normal zoom operation
canRedoZoomChange = false;
canUndoZoomChange = true;
previousZoomState = tempZoomState;
}
*/
return true;
}
private void flushEvents() {
if (myWrapper.isToDispatchTypeAhead() && myContextOnFinish != null) {
myContextOnFinish.dispatch(myEvents);
}
}
public Matrix getControlMatrix() {
if (controlDataset == null || xContext == null || currentZoom == null) return null;
return controlDataset.getMatrix(xContext.getChromosome(), yContext.getChromosome());
}
BallDetector(boolean _display) {
ctx = Freenect.createContext();
if (ctx.numDevices() > 0) {
kinect = ctx.openDevice(0);
} else {
System.err.println("WARNING: No kinects detected");
return;
}
display = _display;
controlFrame = new JFrame("Controls");
controlFrame.setLayout(new GridLayout(5, 1));
controlFrame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
pg = new ParameterGUI();
pg.addIntSlider("maxDepth", "max depth", 800, 2047, 1050);
pg.addIntSlider("blobThresh", "blob thresh", 1, 500, 125);
pg.addIntSlider("thresh", "thresh", 1, 100, 10);
pg.addIntSlider("frames", "frames", 1, 1000, 1);
pg.addListener(
new ParameterListener() {
public void parameterChanged(ParameterGUI _pg, String name) {
if (name.equals("thresh")) {
KinectDepthVideo.THRESH = _pg.gi(name);
} else if (name.equals("frames")) {
KinectDepthVideo.MAX_FRAMES = _pg.gi(name);
} else if (name.equals("maxDepth")) {
KinectDepthVideo.MAX_DEPTH = _pg.gi(name);
}
}
});
controlFrame.add(pg, 0, 0);
startTracking = new JButton("Start Tracking Balls");
startTracking.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
if (!tracking) {
tracking = true;
colorStream.pause();
depthStream.pause();
startTracking.setText("Stop Tracking");
} else {
tracking = false;
colorStream.resume();
depthStream.resume();
startTracking.setText("Start Tracking Balls");
}
}
});
controlFrame.add(startTracking, 1, 0);
resetProjectile = new JButton("Reset Projectile");
resetProjectile.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
try {
lcm.publish("6_RESET", "reset");
} catch (IOException ex) {
System.out.println("can't publish reset");
}
}
});
controlFrame.add(resetProjectile, 2, 0);
resetDepth = new JButton("Reset Depth Avgs");
resetDepth.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
DepthClearer ic = new DepthClearer(pg);
ic.start();
}
});
controlFrame.add(resetDepth, 3, 0);
JPanel scoreButtons = new JPanel(new GridLayout(1, 3));
JButton addHuman = new JButton("human++");
addHuman.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
try {
lcm.publish("6_SCORE_HUMAN", "bish");
} catch (IOException ex) {
System.out.println("can't publish score");
}
}
});
JButton addRobot = new JButton("robot++");
addRobot.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
try {
lcm.publish("6_SCORE_ROBOT", "bish");
} catch (IOException ex) {
System.out.println("can't publish score");
}
}
});
JButton resetScores = new JButton("reset scores");
resetScores.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
try {
lcm.publish("6_SCORE_RESET", "bish");
} catch (IOException ex) {
System.out.println("can't publish score");
}
}
});
scoreButtons.add(addHuman, 0, 0);
scoreButtons.add(addRobot, 0, 1);
scoreButtons.add(resetScores, 0, 2);
controlFrame.add(scoreButtons, 4, 0);
controlFrame.setSize(800, 600);
controlFrame.setVisible(true);
colorFrame = new JFrame("color feed");
colorMonitor = new Object();
colorStream = new KinectRGBVideo(kinect, colorMonitor, display);
colorFrame.setDefaultCloseOperation(JFrame.DO_NOTHING_ON_CLOSE);
colorFrame.addWindowListener(new RGBClose());
colorFrame.setSize(KinectVideo.WIDTH, KinectVideo.HEIGHT);
colorFrame.setContentPane(colorStream);
colorFrame.setVisible(true);
depthFrame = new JFrame("depth feed");
depthMonitor = new Object();
depthStream = new KinectDepthVideo(kinect, depthMonitor, display);
depthFrame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
depthFrame.setSize(KinectVideo.WIDTH, KinectVideo.HEIGHT);
depthFrame.setContentPane(depthStream);
depthFrame.setVisible(true);
rgbImg = new BufferedImage(640, 480, BufferedImage.TYPE_INT_ARGB);
depthImg = new BufferedImage(640, 480, BufferedImage.TYPE_INT_ARGB);
validImageValue = new boolean[KinectVideo.WIDTH * KinectVideo.HEIGHT];
try {
lcm = new LCM("udpm://239.255.76.67:7667?ttl=1");
} catch (IOException e) {
lcm = LCM.getSingleton();
}
BALL = new Statistics();
finder = new BallTracker(KinectVideo.WIDTH, KinectVideo.HEIGHT, false);
if (display) {
depthImg = depthStream.getFrame();
rgbImg = colorStream.getFrame();
}
// get robot position from click
depthStream.addMouseListener(
new MouseAdapter() {
public void mouseClicked(MouseEvent e) {
Point botPix = e.getPoint();
botStart = depthStream.getWorldCoords(botPix);
botStart.z += 0.08;
System.out.println("botStart: " + botStart.toString());
depthStream.showSubtraction();
depthStream.botLoc = botPix;
}
});
DepthClearer ic = new DepthClearer(pg);
ic.start();
}
private void doneButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_doneButtonActionPerformed
Context currCtxt = Context.current;
if (accepted) {
try {
String sourceContextName = propDef.ktd.domTh.languageName;
Context sourceCtxt = Library.findOrCreateContext(sourceContextName);
if (propDef.ktd.domTh.addressTerms) {
sourceCtxt.updateDomTheoryAdr(); // loads it on sourceCtxt
} else {
sourceCtxt.updateDomTheoryRef();
}
KinTermDef newDef = new KinTermDef(propDef.kinTerm);
newDef.comments = FamilyPanel.convertBannedCharacters(notesText.getText());
newDef.definitions = propDef.ktd.definitions;
newDef.expandClauses(sourceCtxt);
makePCStrings(newDef, propDef.eqc.sigString);
updateCBPtrs(newDef);
newDef.makeSigStrings();
dt.addTerm(newDef);
Context.AcceptedDefPtr ptr;
ptr = new Context.AcceptedDefPtr(propDef.kinTerm, UDate.today(), "false", newDef.comments);
ptr.postToHistory(learningHistory);
// Move all dyads for this kinTerm to "Defined" category.
TreeMap<String, ArrayList<Object>> dyads;
dyads = (TreeMap<String, ArrayList<Object>>) dt.dyadsUndefined.remove(newDef.kinTerm);
dt.dyadsDefined.put(newDef.kinTerm, dyads);
SIL_Edit.edWin.chart.dirty = true;
// Set up auto-def for this KTD
TreeMap<String, ArrayList<Context.CB_Ptr>>
autoDef = // autoDef: kinType => AList of Context.CB_Ptrs
(dt.addressTerms ? currCtxt.autoDefAdr : currCtxt.autoDefRef);
for (Object o : newDef.expandedDefs) {
ClauseBody cb = (ClauseBody) o;
String kinType = cb.pcString;
if (autoDef.get(kinType) == null) {
autoDef.put(kinType, new ArrayList<Context.CB_Ptr>());
}
ArrayList<Context.CB_Ptr> defList = autoDef.get(kinType);
defList.add(new Context.CB_Ptr(newDef.kinTerm, cb.seqNmbr));
}
// Context.current = currCtxt; // It was reset by updates to SourceCtxt
String msg =
"Would you like to apply this new definition to all\n"
+ "Ego/Alter pairs that it fits?";
int decision =
JOptionPane.showConfirmDialog(
this, msg, "Apply Definition?", JOptionPane.YES_NO_OPTION);
if (decision == JOptionPane.YES_OPTION) {
SIL_Edit.edWin.applyDef(newDef, dt);
}
// Mark this suggestion as processed and update menu
papa.markProcessed(suggNmbr);
papa.reset();
} catch (Exception exc) {
String msg = "While fleshing out a KTD for " + propDef.kinTerm;
msg += "\nhit internal error: " + exc;
MainPane.displayError(msg, "Internal Error", JOptionPane.ERROR_MESSAGE);
}
} else if (rejected) {
Context.RejectedPropDefPtr reject =
new Context.RejectedPropDefPtr(
propDef.kinTerm,
UDate.today(),
"false",
FamilyPanel.convertBannedCharacters(notesText.getText()),
propDef.eqc.sigString,
propDef.eqc.prototype.languageName,
propDef.eqc.prototype.kinTerm);
reject.postToHistory(learningHistory);
papa.markProcessed(suggNmbr);
papa.reset();
}
reset();
} // GEN-LAST:event_doneButtonActionPerformed
public boolean isWholeGenome() {
return xContext != null && HiCFileTools.isAllChromosome(xContext.getChromosome());
}
public void folderFocusLost(java.awt.event.FocusEvent evt) {
ctxt.saveState = true;
ctxt.editDirectory = folder.getText();
}
/**
* Move by the specified delta (in bins)
*
* @param dxBins -- delta x in bins
* @param dyBins -- delta y in bins
*/
public void moveBy(double dxBins, double dyBins) {
final double newX = xContext.getBinOrigin() + dxBins;
final double newY = yContext.getBinOrigin() + dyBins;
moveTo(newX, newY);
}
public ContextEditor(Context cntxt) {
super("Edit User Context: " + localFileName(cntxt));
ctxt = cntxt;
windowNum = ctxt.languageName + " Context Editor";
setDefaultCloseOperation(DISPOSE_ON_CLOSE);
listener = new CEListener(this);
JPanel nameBox = new JPanel();
nameBox.setLayout(new BoxLayout(nameBox, BoxLayout.LINE_AXIS));
name = new JTextField(ctxt.languageName, 28);
name.setMaximumSize(new Dimension(225, 22));
name.addFocusListener(
new java.awt.event.FocusAdapter() {
public void focusLost(java.awt.event.FocusEvent evt) {
nameFocusLost(evt);
}
});
JLabel nameLabel = new JLabel("Language Name: ");
nameBox.add(nameLabel);
nameBox.add(name);
JPanel folderBox = new JPanel();
folderBox.setLayout(new BoxLayout(folderBox, BoxLayout.LINE_AXIS));
folder = new JTextField(ctxt.editDirectory);
folder.setMaximumSize(new Dimension(225, 22));
// folder.addActionListener(listener);
// folder.setActionCommand("folder edit");
folder.addFocusListener(
new java.awt.event.FocusAdapter() {
public void focusLost(java.awt.event.FocusEvent evt) {
folderFocusLost(evt);
}
});
JLabel folderLabel = new JLabel("SILK file folder: ");
folderBox.add(folderLabel);
folderBox.add(folder);
JPanel nameFolderBox = new JPanel();
nameFolderBox.setLayout(new BoxLayout(nameFolderBox, BoxLayout.PAGE_AXIS));
nameBox.setAlignmentX(0.5f);
nameFolderBox.add(nameBox);
nameFolderBox.add(Box.createRigidArea(new Dimension(0, 4)));
nameFolderBox.add(folderBox);
nameFolderBox.setAlignmentX(0.5f);
buildPopulationBox();
JPanel btnBoxUDPs = new JPanel(), subBoxUDP = new JPanel();
btnBoxUDPs.setLayout(new BoxLayout(btnBoxUDPs, BoxLayout.PAGE_AXIS));
subBoxUDP.setLayout(new BoxLayout(subBoxUDP, BoxLayout.LINE_AXIS));
int numUDPs = 0;
if (ctxt.userDefinedProperties != null) {
numUDPs = ctxt.userDefinedProperties.size();
}
String plur = "ies";
if (numUDPs == 1) {
plur = "y";
}
JLabel udpLabel = new JLabel("Has " + numUDPs + " User-Defined Propert" + plur);
subBoxUDP.add(udpLabel);
JButton addUDP = new JButton("Add UDP");
addUDP.setActionCommand("add UDP");
addUDP.addActionListener(listener);
subBoxUDP.add(addUDP);
btnBoxUDPs.add(subBoxUDP);
if (numUDPs > 0) {
Dimension sizer = new Dimension(250, 50);
String[] udpMenu = genUDPMenu();
UDPick = new JComboBox(udpMenu);
UDPick.addActionListener(listener);
UDPick.setActionCommand("view/edit UDP");
UDPick.setMinimumSize(sizer);
UDPick.setMaximumSize(sizer);
UDPick.setBorder(
BorderFactory.createTitledBorder(
BorderFactory.createLineBorder(Color.blue), "View/Edit UDPs"));
btnBoxUDPs.add(UDPick);
} // end of if-any-UDPs-exist
JPanel domThs = new JPanel();
domThs.setLayout(new BoxLayout(domThs, BoxLayout.PAGE_AXIS));
domThs.setBorder(
BorderFactory.createTitledBorder(
BorderFactory.createLineBorder(Color.blue), "Kinship System Domain Theories"));
domThs.setAlignmentX(0.5f);
JPanel dtRefBtnBox = new JPanel();
dtRefBtnBox.setLayout(new BoxLayout(dtRefBtnBox, BoxLayout.LINE_AXIS));
dtRefBtnBox.setAlignmentX(0.0f);
JLabel dtRefLabel = new JLabel("Terms of Reference ");
dtRefBtnBox.add(dtRefLabel);
if (ctxt.domTheoryRefExists()) {
JButton dtRefEdit = new JButton("Edit Theory");
dtRefEdit.setActionCommand("edit dtRef");
dtRefEdit.addActionListener(listener);
dtRefBtnBox.add(dtRefEdit);
// JButton dtRefDelete = new JButton("Delete Theory");
// dtRefDelete.setActionCommand("dtRef delete");
// dtRefDelete.addActionListener(listener);
// dtRefBtnBox.add(dtRefDelete);
} // end of if-dt-exists
else { // if does not exist
JLabel dtRefNone = new JLabel("< None >");
dtRefBtnBox.add(dtRefNone);
// JButton dtRefAdd = new JButton("Add Theory");
// dtRefAdd.setActionCommand("dtRef add");
// dtRefAdd.addActionListener(listener);
// dtRefBtnBox.add(dtRefAdd);
} // end of does-not-exist
domThs.add(dtRefBtnBox);
JPanel dtAddrBtnBox = new JPanel();
dtAddrBtnBox.setLayout(new BoxLayout(dtAddrBtnBox, BoxLayout.LINE_AXIS));
dtAddrBtnBox.setAlignmentX(0.0f);
JLabel dtAddrLabel = new JLabel("Terms of Address ");
dtAddrBtnBox.add(dtAddrLabel);
if (ctxt.domTheoryAdrExists()) {
JButton dtAddrEdit = new JButton("Edit Theory");
dtAddrEdit.setActionCommand("edit dtAddr");
dtAddrEdit.addActionListener(listener);
dtAddrBtnBox.add(dtAddrEdit);
// JButton dtAddrViewList = new JButton("Delete Theory");
// dtAddrViewList.setActionCommand("dtAddr delete");
// dtAddrViewList.addActionListener(listener);
// dtAddrBtnBox.add(dtAddrViewList);
} // end of if-dt-exists
else { // if does not exist
JLabel dtAddrNone = new JLabel("< None >");
dtAddrBtnBox.add(dtAddrNone);
// JButton dtAddrAdd = new JButton("Add Theory");
// dtAddrAdd.setActionCommand("dtAddr add");
// dtAddrAdd.addActionListener(listener);
// dtAddrBtnBox.add(dtAddrAdd);
} // end of does-not-exist
domThs.add(dtAddrBtnBox);
// End of the left hand portion
// Right hand portion follows. it is narrower.
JPanel polyBox = new JPanel();
polyBox.setLayout(new BoxLayout(polyBox, BoxLayout.PAGE_AXIS));
polyBox.setAlignmentX(0.5f);
JLabel polyLabelA = new JLabel("Polygamy");
JLabel polyLabelB = new JLabel("Permitted?");
JRadioButton yesPoly = new JRadioButton("Yes");
yesPoly.setActionCommand("polygamy yes");
yesPoly.addActionListener(listener);
JRadioButton noPoly = new JRadioButton("No");
noPoly.setActionCommand("polygamy no");
noPoly.addActionListener(listener);
if (cntxt.polygamyPermit) {
yesPoly.setSelected(true);
} else {
noPoly.setSelected(true);
}
ButtonGroup polyBtns = new ButtonGroup();
polyBtns.add(yesPoly);
polyBtns.add(noPoly);
polyBox.add(polyLabelA);
polyBox.add(polyLabelB);
polyBox.add(yesPoly);
polyBox.add(noPoly);
JPanel matrixBox = new JPanel();
matrixBox.setLayout(new BoxLayout(matrixBox, BoxLayout.PAGE_AXIS));
matrixBox.setAlignmentX(0.5f);
JLabel matrixLabelA = new JLabel("Kin Term Matrix");
JLabel matrixLabelC = new JLabel(ctxt.indSerNumGen + " rows");
JLabel matrixLabelD = new JLabel(ctxt.ktm.numberOfKinTerms() + " terms");
matrixLabelA.setAlignmentX(0.5f);
matrixLabelC.setAlignmentX(0.5f);
matrixLabelD.setAlignmentX(0.5f);
JButton matrixEditBtn = new JButton("Edit Matrix");
matrixEditBtn.setEnabled(false);
matrixEditBtn.setActionCommand("edit matrix");
matrixEditBtn.addActionListener(listener);
matrixEditBtn.setAlignmentX(0.5f);
matrixBox.add(matrixLabelA);
matrixBox.add(matrixLabelC);
matrixBox.add(matrixLabelD);
matrixBox.add(matrixEditBtn);
JPanel distinctBox = new JPanel();
distinctBox.setLayout(new BoxLayout(distinctBox, BoxLayout.PAGE_AXIS));
distinctBox.setAlignmentX(0.5f);
JLabel distinctLabelA = new JLabel("Distinct Terms");
JLabel distinctLabelB = new JLabel("of Address");
distinctLabelA.setAlignmentX(0.5f);
distinctLabelB.setAlignmentX(0.5f);
JRadioButton yesDistinct = new JRadioButton("Yes");
yesDistinct.setActionCommand("distinct yes");
yesDistinct.addActionListener(listener);
JRadioButton noDistinct = new JRadioButton("No");
noDistinct.setActionCommand("distinct no");
noDistinct.addActionListener(listener);
yesDistinct.setAlignmentX(0.5f);
noDistinct.setAlignmentX(0.5f);
if (ctxt.distinctAdrTerms) {
yesDistinct.setSelected(true);
} else {
noDistinct.setSelected(true);
}
ButtonGroup distinctBtns = new ButtonGroup();
distinctBtns.add(yesDistinct);
distinctBtns.add(noDistinct);
distinctBox.add(distinctLabelA);
distinctBox.add(distinctLabelB);
distinctBox.add(yesDistinct);
distinctBox.add(noDistinct);
/*
* NOTE: It should be possible to put all these elements directly into
* the ContentPane. But that doesn't work; the layout is truly ugly and
* stuff gets stacked on top of other stuff. What works is to put
* everything into a JPanel with BoxLayout. Then put the JPanel into
* ContentPane.
*/
JPanel leftCol = new JPanel();
leftCol.setLayout(new BoxLayout(leftCol, BoxLayout.PAGE_AXIS));
leftCol.add(nameFolderBox);
leftCol.add(Box.createRigidArea(new Dimension(0, 4)));
leftCol.add(populationBox);
leftCol.add(Box.createRigidArea(new Dimension(0, 8)));
leftCol.add(btnBoxUDPs);
leftCol.add(Box.createRigidArea(new Dimension(0, 8)));
leftCol.add(domThs);
leftCol.add(new JLabel(" "));
JPanel rightCol = new JPanel();
rightCol.setLayout(new BoxLayout(rightCol, BoxLayout.PAGE_AXIS));
rightCol.setBorder(
BorderFactory.createTitledBorder(BorderFactory.createLineBorder(Color.blue), "Options"));
rightCol.add(Box.createRigidArea(new Dimension(0, 20)));
rightCol.add(polyBox);
rightCol.add(Box.createRigidArea(new Dimension(0, 20)));
rightCol.add(matrixBox);
int high = (numUDPs > 0 ? 120 : 20);
rightCol.add(Box.createRigidArea(new Dimension(0, high)));
rightCol.add(distinctBox);
JPanel commentBox = new JPanel();
commentBox.setLayout(new BoxLayout(commentBox, BoxLayout.PAGE_AXIS));
commentBox.setBorder(
BorderFactory.createTitledBorder(
BorderFactory.createLineBorder(Color.blue), "Notes on this culture:"));
JScrollPane commentsPane = new JScrollPane();
comments = new JTextArea();
comments.setColumns(20);
comments.setEditable(true);
comments.setRows(3);
comments.setText(PersonPanel.restoreLineBreaks(ctxt.comments));
comments.getDocument().addDocumentListener(new CommentListener());
commentsPane.setViewportView(comments);
commentBox.add(commentsPane);
JPanel guts = new JPanel(); // Holds the guts of this window
guts.setLayout(new BoxLayout(guts, BoxLayout.LINE_AXIS));
guts.add(leftCol);
guts.add(Box.createRigidArea(new Dimension(10, 4)));
guts.add(rightCol);
JPanel wholeThing = new JPanel();
wholeThing.setLayout(new BoxLayout(wholeThing, BoxLayout.PAGE_AXIS));
wholeThing.add(Box.createRigidArea(new Dimension(0, 4)));
wholeThing.add(guts);
wholeThing.add(Box.createRigidArea(new Dimension(0, 8)));
wholeThing.add(commentBox);
wholeThing.add(Box.createRigidArea(new Dimension(0, 4)));
getContentPane().add(wholeThing);
addInternalFrameListener(this);
setSize(600, 620);
setVisible(true);
} // end of ContextEditor constructor
