public void show(Component invoker, int x, int y) {
ViperViewMediator mediator = getMediator();
Point pnt = new Point(x, y);
EnhancedTable tab = getTable();
int row = tab.rowAtPoint(pnt);
desc = getCurrentModel().getDescriptorAtRow(row);
int col = tab.columnAtPoint(pnt);
Object cellValue = tab.getValueAt(row, col);
if (cellValue instanceof Attribute) {
attr = (Attribute) cellValue;
// hide the "Occlusions..." option when we're not dealing with a Textline object
boolean isTextline = attr.getAttrConfig().getAttrType().endsWith("textline");
occlusions.setVisible(isTextline);
occSeparator.setVisible(isTextline);
Instant now = mediator.getCurrentFrame();
if (now == null) {
mediator.getDisplayWRTManager().setAttribute(null, null);
wrt.setEnabled(false);
wrt.setSelected(false);
} else {
boolean isDwrt = attr == mediator.getDisplayWRTManager().getAttribute();
boolean dwrtable =
(attr.getAttrValueAtInstant(now) instanceof HasCentroid
&& attr.getDescriptor().getValidRange().contains(now));
wrt.setEnabled(dwrtable);
wrt.setSelected(isDwrt);
}
} else {
attr = null;
wrt.setEnabled(false);
wrt.setSelected(false);
}
if (null != desc) {
PropagateInterpolateModule proper = getMediator().getPropagator();
p.setSelected(proper.isPropagatingThis(desc));
v.setSelected(mediator.isThisValidNow(desc));
resetMarks();
super.show(invoker, x, y);
}
}
/**
* Set up the menu bar.
*
* @return The JMenuBar we set up.
*/
private JMenuBar setupMenuBar() {
JMenuBar menuBar = new JMenuBar();
/* File */
JMenu fileMenu = new JMenu("File");
menuBar.add(fileMenu);
/* File -> Open CSV */
JMenuItem miFileOpenCSV =
new JMenuItem(
new AbstractAction("Open CSV") {
@Override
public void actionPerformed(ActionEvent e) {
FileDialog fd =
new FileDialog(mainFrame, "Open Darwin CSV file ...", FileDialog.LOAD);
fd.setVisible(true);
File file;
if (fd.getDirectory() != null) {
file = new File(fd.getDirectory(), fd.getFile());
} else if (fd.getFile() != null) {
file = new File(fd.getFile());
} else {
return;
}
// Clear out old file.
loadFile(null);
// SwingWorker MAGIC!
new MainFrameWorker("loading file '" + file + "'", file) {
@Override
protected Object doInBackground() throws Exception {
System.err.println("Loading file: " + input);
loadFile((File) input, DarwinCSV.FILE_CSV_DELIMITED);
return null;
}
}.execute();
}
});
fileMenu.add(miFileOpenCSV);
/* File -> Open CSV without UI */
JMenuItem miFileOpenCSVnoUI =
new JMenuItem(
new AbstractAction("Open CSV without UI") {
@Override
public void actionPerformed(ActionEvent e) {
FileDialog fd =
new FileDialog(mainFrame, "Open Darwin CSV file ...", FileDialog.LOAD);
fd.setVisible(true);
File file;
if (fd.getDirectory() != null) {
file = new File(fd.getDirectory(), fd.getFile());
} else if (fd.getFile() != null) {
file = new File(fd.getFile());
} else {
return;
}
// Clear out old file
loadFile(null);
loadFile(file, DarwinCSV.FILE_CSV_DELIMITED);
}
});
fileMenu.add(miFileOpenCSVnoUI);
/* File -> Open tab-delimited */
JMenuItem miFileOpenTab =
new JMenuItem(
new AbstractAction("Open tab-delimited") {
@Override
public void actionPerformed(ActionEvent e) {
FileDialog fd =
new FileDialog(
mainFrame, "Open Darwin tab-delimited file ...", FileDialog.LOAD);
fd.setVisible(true);
File file;
if (fd.getDirectory() != null) {
file = new File(fd.getDirectory(), fd.getFile());
} else if (fd.getFile() != null) {
file = new File(fd.getFile());
} else {
return;
}
// Clear out old file
loadFile(null);
// SwingWorker MAGIC!
new MainFrameWorker("loading file '" + file + "'", file) {
@Override
protected Object doInBackground() throws Exception {
loadFile((File) input, DarwinCSV.FILE_TAB_DELIMITED);
return null;
}
}.execute();
}
});
fileMenu.add(miFileOpenTab);
/* File -> Save CSV */
JMenuItem miFileSave =
new JMenuItem(
new AbstractAction("Save as CSV") {
@Override
public void actionPerformed(ActionEvent e) {
FileDialog fd =
new FileDialog(mainFrame, "Save Darwin CSV file ...", FileDialog.SAVE);
fd.setVisible(true);
File file;
if (fd.getDirectory() != null) {
file = new File(fd.getDirectory(), fd.getFile());
} else if (fd.getFile() != null) {
file = new File(fd.getFile());
} else {
return;
}
// SwingWorker MAGIC!
new MainFrameWorker("saving CSV file '" + file + "'", file) {
@Override
protected Object doInBackground() throws Exception {
currentCSV.saveToFile((File) input, DarwinCSV.FILE_CSV_DELIMITED);
return null;
}
}.execute();
}
});
fileMenu.add(miFileSave);
/* File -> Exit */
JMenuItem miFileExit =
new JMenuItem(
new AbstractAction("Exit") {
@Override
public void actionPerformed(ActionEvent e) {
mainFrame.setVisible(false);
mainFrame.dispose();
}
});
fileMenu.add(miFileExit);
/* Match */
JMenu matchMenu = new JMenu("Match");
menuBar.add(matchMenu);
/* Match -> Against CSV */
JMenuItem miMatchCSV =
new JMenuItem(
new AbstractAction("Match against CSV") {
@Override
public void actionPerformed(ActionEvent e) {
FileDialog fd =
new FileDialog(
mainFrame, "Open Darwin CSV file for matching ...", FileDialog.LOAD);
fd.setVisible(true);
if (fd.getFile() == null) return;
File file = new File(fd.getFile());
if (fd.getDirectory() != null) {
file = new File(fd.getDirectory(), fd.getFile());
}
// Clear out old match against.
matchAgainst(null);
// SwingWorker MAGIC!
new MainFrameWorker("matching against file '" + file + "'", file) {
@Override
protected Object doInBackground() throws Exception {
matchAgainst(new DarwinCSV((File) input, DarwinCSV.FILE_CSV_DELIMITED));
return null;
}
}.execute();
}
});
matchMenu.add(miMatchCSV);
/* Match -> Against ITIS */
JMenuItem miMatchITIS =
new JMenuItem(
new AbstractAction("Match against ITIS") {
@Override
public void actionPerformed(ActionEvent e) {
DarwinCSV csv = DownloadITIS.getIt(mainFrame);
matchAgainst(csv);
table.repaint();
}
});
matchMenu.add(miMatchITIS);
/* TaxonID */
JMenu taxonIDMenu = new JMenu("TaxonIDs");
menuBar.add(taxonIDMenu);
/* TaxonID -> Treat TaxonIDs as ... */
JMenu treatTaxonIDsAs = new JMenu("Treat TaxonIDs as ...");
taxonIDMenu.add(treatTaxonIDsAs);
/* TaxonID -> Treat -> ITIS TSNs */
JCheckBoxMenuItem miITIS_TSNs =
new JCheckBoxMenuItem(
new AbstractAction("ITIS TSNs") {
@Override
public void actionPerformed(ActionEvent e) {
// Don't let the user unselect this.
((JCheckBoxMenuItem) e.getSource()).setSelected(true);
}
});
miITIS_TSNs.setSelected(true);
treatTaxonIDsAs.add(miITIS_TSNs);
/* TaxonID -> Create family column */
JMenuItem miTaxonID_createFamily =
new JMenuItem(
new AbstractAction("Create family column") {
@Override
public void actionPerformed(ActionEvent e) {
/*
if(currentCSV == null)
return;
if(currentMatch == null)
return;
int col = getJTable().getSelectedColumn();
if(col == -1)
return;
RowIndex rowIndex = currentCSV.getRowIndex();
String colName = rowIndex.getColumnName(col);
if(rowIndex.hasColumn(colName + "_family")) {
// TODO MessageBox
return;
}
if(Name.class.isAssignableFrom(currentCSV.getRowIndex().getColumnClass(col))) {
// A name class! Make a new column!
currentCSV.getRowIndex().setColumnClass(colName + "_family", String.class);
currentCSV.getRowIndex().createNewColumn(colName + "_family", col + 1, colName, new MapOperation() {
@Override
public Object mapTo(Object value) {
return "family";
}
});
// Repaint the table.
getJTable().repaint();
}
*/
}
});
taxonIDMenu.add(miTaxonID_createFamily);
/* Help */
JMenu helpMenu = new JMenu("Help");
menuBar.add(helpMenu);
/* Help -> Memory information */
JMenuItem miHelpMemory =
new JMenuItem(
new AbstractAction("Memory information") {
@Override
public void actionPerformed(ActionEvent e) {
System.gc();
MessageBox.messageBox(
mainFrame,
"Memory information",
"Maximum memory: "
+ Runtime.getRuntime().maxMemory() / (1024 * 1024)
+ " MB\n"
+ "Total memory: "
+ Runtime.getRuntime().totalMemory() / (1024 * 1024)
+ " MB\n"
+ "Used memory: "
+ (Runtime.getRuntime().totalMemory() - Runtime.getRuntime().freeMemory())
/ (1024 * 1024)
+ " MB\n"
+ "Free memory: "
+ Runtime.getRuntime().freeMemory() / (1024 * 1024)
+ " MB\n"
+ "Available memory: "
+ (Runtime.getRuntime().maxMemory()
- Runtime.getRuntime().totalMemory()
+ Runtime.getRuntime().freeMemory())
/ (1024 * 1024)
+ " MB");
}
});
helpMenu.add(miHelpMemory);
return menuBar;
}