/**
* This method will be called when the mouse is clicked over the image being displayed. The
* coordinates and pixel value will be stored on an ArrayList.
*
* @param me the mouse event that caused the execution of this method.
*/
public void mouseClicked(MouseEvent me) {
int x = me.getX();
int y = me.getY();
System.out.println("Storing " + x + "," + y);
if ((x >= width) || (y >= height)) {
clicksInformation.add("No data!");
return;
}
if (isDoubleType) // process the pixel as an array of double values
{
StringBuffer coords = new StringBuffer();
coords.append(x + "," + y + " [");
readIterator.getPixel(x, y, dpixel); // read the pixel
for (int b = 0; b < dpixel.length; b++)
coords.append(dpixel[b] + ","); // append to the StringBuffer
coords.deleteCharAt(coords.length() - 1); // erase last comma
coords.append("]");
// Put the formatted StringBuffer on the
clicksInformation.add(coords.toString());
} else // pixel type is not floating point, will be processed as integers.
{
if (isIndexed) // if color model is indexed
{
StringBuffer coords = new StringBuffer();
coords.append(x + "," + y + " ");
readIterator.getPixel(x, y, ipixel); // read the pixel
// Assume ipixel.length = 1
coords.append("Index: " + ipixel[0] + " [");
// Add also the RGB entry from the LUT.
coords.append(
" RGB:"
+ lutData[0][ipixel[0]]
+ ","
+ lutData[1][ipixel[0]]
+ ","
+ lutData[2][ipixel[0]]);
coords.append("]");
// Put the formatted StringBuffer on the
clicksInformation.add(coords.toString());
} else // pixels are of integer type, but not indexed
{
StringBuffer coords = new StringBuffer();
coords.append(x + "," + y + " [");
readIterator.getPixel(x, y, ipixel); // read the pixel
for (int b = 0; b < ipixel.length; b++)
coords.append(ipixel[b] + ","); // append to the StringBuffer
coords.deleteCharAt(coords.length() - 1); // erase last comma
coords.append("]");
// Put the formatted StringBuffer on the
clicksInformation.add(coords.toString());
}
} // pixel is integer type
} // end of method mouseClicked
public double[] findNeighPixel(
PlanarImage im,
int x,
int y,
int width,
int height,
SampleModel sm,
int nbands,
RandomIter iterator) {
double[] SumPixels = new double[nbands];
double[] pixel = new double[nbands];
int numPointsUsed = 0;
int numNeighborsToConsider = 30;
for (int h = Math.max(y - numNeighborsToConsider, 0);
h < Math.min(y + numNeighborsToConsider, height);
h++) {
for (int w = Math.max(x - numNeighborsToConsider, 0);
w < Math.min(x + numNeighborsToConsider, width);
w++) {
// Get the array of values for the pixel on the w,h coordinate.
iterator.getPixel(w, h, pixel);
// Add the values.
if (!isWhite(pixel) && !isBlack(pixel)) {
for (int i = 0; i < nbands; i++) {
SumPixels[i] += pixel[i];
}
numPointsUsed++;
}
}
}
if (numPointsUsed > 0) {
for (int i = 0; i < nbands; i++) {
pixel[i] = SumPixels[i] / numPointsUsed;
}
} else {
pixel = new double[] {0, 0, 0};
}
return pixel;
}
/*
* This method averages the pixel values around a central point and return the
* average as an instance of Color. The point coordinates are proportional to
* the image.
*/
private Color averageAround(BufferedImage i, double px, double py) {
// Get an iterator for the image.
RandomIter iterator = RandomIterFactory.create(i, null);
// Get memory for a pixel and for the accumulator.
double[] pixel = new double[i.getSampleModel().getNumBands()];
double[] accum = new double[3];
int numPixels = 0;
// Sample the pixels.
for (double x = px * i.getWidth() - sampleSize; x < px * i.getWidth() + sampleSize; x++) {
for (double y = py * i.getHeight() - sampleSize; y < py * i.getHeight() + sampleSize; y++) {
iterator.getPixel((int) x, (int) y, pixel);
accum[0] += pixel[0];
accum[1] += pixel[1];
accum[2] += pixel[2];
numPixels++;
}
}
// Average the accumulated values.
accum[0] /= numPixels;
accum[1] /= numPixels;
accum[2] /= numPixels;
return new Color((int) accum[0], (int) accum[1], (int) accum[2]);
}
public double[][] PlanarImage2DataGrid(PlanarImage img, String EmageType) {
double[][] BucketArray = new double[img.getHeight()][img.getWidth()];
int width = img.getWidth();
int height = img.getHeight();
// Get the number of bands on the image.
SampleModel sm = img.getSampleModel();
int nbands = sm.getNumBands();
// We assume that we can get the pixels values in a integer array.
double[] pixel = new double[nbands];
// Get an iterator for the image.
RandomIter iterator = RandomIterFactory.create(img, null);
if (ignoreColorSamplesBeyond > -1) {
for (int i = 0; i < width; i++) {
for (int j = 0; j < height; j++) {
iterator.getPixel(i, j, pixel);
double curDiff = 999999999;
double diff = 0;
int curBucket = -1;
for (int i2 = 0; i2 < colorMatrix.length; i2++) {
for (int j2 = 0; j2 < Math.min(nbands, colorMatrix[0].length); j2++) {
diff += (pixel[j2] - colorMatrix[i2][j2]) * (pixel[j2] - colorMatrix[i2][j2]);
}
if (diff < curDiff) {
curDiff = diff;
curBucket = i2;
}
// log.info("i: " + i2 + ", val: " + diff);
diff = 0;
}
if (curBucket >= ignoreColorSamplesBeyond) curBucket = -1;
BucketArray[j][i] =
(curBucket
+ 1); // *255 / (colorMatrix.length); actually show the categories not normalized
// to 255 now.
// if(curBucket >= 0) log.info(curBucket + "," + BucketArray[j][i]);
}
}
} else {
log.info("Ignoring any binning. Going with gray values");
for (int i = 0; i < height; i++) {
for (int j = 0; j < width; j++) {
int sumChannels = 0;
iterator.getPixel(j, i, pixel);
for (int j2 = 0; j2 < nbands; j2++) {
sumChannels += pixel[j2];
}
BucketArray[i][j] = (sumChannels) / (nbands);
}
}
}
return BucketArray;
}
public PlanarImage PostProcessEmage(PlanarImage img) {
if (maskImgFName != null) {
int width = img.getWidth();
int height = img.getHeight();
// Get the number of bands on the image.
SampleModel sm = img.getSampleModel();
int nbands = sm.getNumBands();
// We assume that we can get the pixels values in a integer array.
double[] pixel = new double[nbands];
// Get an iterator for the image.
RandomIter iterator = RandomIterFactory.create(img, null);
WritableRaster rasterImage =
RasterFactory.createBandedRaster(
DataBuffer.TYPE_BYTE, width, height, nbands, new Point(0, 0));
double[] pixelNeighb = new double[nbands];
double[] pixelblack = new double[nbands];
for (int i = 0; i < nbands; i++) {
pixelNeighb[i] = 0;
pixelblack[i] = 0;
}
PlanarImage mask = JAI.create("FileLoad", maskImgFName);
RandomIter iteratorMask = RandomIterFactory.create(mask, null);
double[] pixelMask = new double[mask.getSampleModel().getNumBands()];
for (int i = 0; i < width; i++) {
for (int j = 0; j < height; j++) {
iteratorMask.getPixel(i, j, pixelMask);
if (!isBlack(pixelMask)) {
iterator.getPixel(i, j, pixel);
if (isWhite(pixel)) {;
} else {
rasterImage.setPixel(i, j, pixel);
}
} else {
rasterImage.setPixel(i, j, pixelblack);
}
}
}
SampleModel sModel2 =
RasterFactory.createBandedSampleModel(DataBuffer.TYPE_BYTE, width, height, nbands);
// Try to create a compatible ColorModel - if the number of bands is
// larger than 4, it will be null.
ColorModel cModel2 = PlanarImage.createColorModel(sModel2);
// Create a TiledImage using the sample and color models.
TiledImage processedImage = new TiledImage(0, 0, width, height, 0, 0, sModel2, cModel2);
// Set the data of the tiled image to be the raster.
processedImage.setData(rasterImage);
// Save the image to a file.
try {
ImageIO.write(processedImage, "jpg", new File("proc_" + theme + ".jpg"));
} catch (IOException e) {
log.error(e.getMessage());
}
// Save the image on a file.
return processedImage;
} else {
// Save the image to a file.
try {
ImageIO.write(img, "jpg", new File("NOTproc_" + theme + ".jpg"));
} catch (IOException e) {
log.error(e.getMessage());
}
return img;
}
}
public PlanarImage createRectifiedImage(PlanarImage Image) {
int nRows = params.getNumOfRows();
int nCols = params.getNumOfColumns();
Point rectifiedPoint;
// Get the image dimensions of the unrectified image
int width = Image.getWidth();
int height = Image.getHeight();
log.info(nRows + ", " + nCols + "\t" + width + ", " + height);
// Get an iterator for the image.
RandomIter iterator = RandomIterFactory.create(Image, null);
// Get the number of bands on the image.
SampleModel smO = Image.getSampleModel();
int nbandsO = smO.getNumBands();
// We assume that we can get the pixels values in a integer array.
double[] pixelO = new double[nbandsO];
// Get an iterator for the image.
WritableRaster rasterPollenO =
RasterFactory.createBandedRaster(
DataBuffer.TYPE_BYTE, nCols, nRows, nbandsO, new Point(0, 0));
for (int i = 0; i < nCols; i++) {
for (int j = 0; j < nRows; j++) {
rectifiedPoint =
this.getMatchingCoord(
new Point(i + 1, j + 1)); // coz java array start at 0 matlab its 1.
if (rectifiedPoint.x >= 1
&& rectifiedPoint.x < width
&& rectifiedPoint.y >= 1
&& rectifiedPoint.y < height) {
iterator.getPixel(rectifiedPoint.x - 1, rectifiedPoint.y - 1, pixelO);
rasterPollenO.setPixel(i, j, pixelO);
// log.info("setpixel: " + i + ", " + j + ", value " + pixelO[0] + ", " + pixelO[1] + ",
// " + pixelO[2] + ", " + pixelO[3]);
} else {
}
}
}
SampleModel sModel2 =
RasterFactory.createBandedSampleModel(DataBuffer.TYPE_BYTE, nCols, nRows, nbandsO);
// Try to create a compatible ColorModel - if the number of bands is
// larger than 4, it will be null.
ColorModel cModel2 = PlanarImage.createColorModel(sModel2);
// Create a TiledImage using the sample and color models.
TiledImage rectPollenImage = new TiledImage(0, 0, nCols, nRows, 0, 0, sModel2, cModel2);
// log.info(rasterPollenO.getMinX() + ", " + rasterPollenO.getMinY() );
// Set the data of the tiled image to be the raster.
rectPollenImage.setData(rasterPollenO);
// Save the image to a file.
try {
ImageIO.write(rectPollenImage, "jpg", new File("rect" + theme + ".jpg"));
} catch (IOException e) {
log.error(e.getMessage());
}
return rectPollenImage;
}