public void runTest(Object ctx, int numReps) {
final Context ictx = (Context) ctx;
final ImageInputStream iis = ictx.inputStream;
final int length = ictx.length;
int pos = 0;
try {
iis.mark();
do {
if (pos + 4 > length) {
iis.reset();
iis.mark();
pos = 0;
}
iis.readUnsignedInt();
pos += 4;
} while (--numReps >= 0);
} catch (IOException e) {
e.printStackTrace();
} finally {
try {
iis.reset();
} catch (IOException e) {
}
}
}
public void runTest(Object ctx, int numReps) {
final Context ictx = (Context) ctx;
final ImageInputStream iis = ictx.inputStream;
final int scanlineStride = ictx.scanlineStride;
final int length = ictx.length;
int pos = 0;
try {
iis.mark();
do {
if (pos + scanlineStride > length) {
iis.reset();
iis.mark();
pos = 0;
}
iis.skipBytes(scanlineStride);
pos += scanlineStride;
} while (--numReps >= 0);
} catch (IOException e) {
e.printStackTrace();
} finally {
try {
iis.reset();
} catch (IOException e) {
}
}
}
public boolean canDecodeInput(Object input) throws IOException {
// The input source must be an ImageInputStream because the constructor
// passes STANDARD_INPUT_TYPE (an array consisting of ImageInputStream)
// as the only type of input source that it will deal with to its
// superclass.
if (!(input instanceof ImageInputStream)) return false;
ImageInputStream stream = (ImageInputStream) input;
/** Read and validate the input source's header. */
byte[] header = new byte[8];
try {
// The input source's current position must be preserved so that
// other ImageReaderSpis can determine if they can decode the input
// source's format, should this input source be unable to handle the
// decoding. Because the input source is an ImageInputStream, its
// mark() and reset() methods are called to preserve the current
// position.
stream.mark();
stream.read(header);
stream.reset();
} catch (IOException e) {
return false;
}
byte[] controlHeader = new byte[] {(byte) 151, 74, 66, 50, 13, 10, 26, 10};
return Arrays.equals(controlHeader, header);
}
public boolean canDecodeInput(Object source) throws IOException {
if (!(source instanceof ImageInputStream)) {
return false;
}
ImageInputStream stream = (ImageInputStream) source;
stream.mark();
int type = stream.readByte(); // TypeField
byte fixHeaderField = stream.readByte();
int width = ImageUtil.readMultiByteInteger(stream);
int height = ImageUtil.readMultiByteInteger(stream);
long remainingBytes = stream.length() - stream.getStreamPosition();
stream.reset();
// check WBMP "header"
if (type != 0 || fixHeaderField != 0) {
// while WBMP reader does not support ext WBMP headers
return false;
}
// check image dimension
if (width <= 0 || height <= 0) {
return false;
}
long scanSize = (width / 8) + ((width % 8) == 0 ? 0 : 1);
return (remainingBytes == scanSize * height);
}
/**
* Returns the geotiff metadata for this geotiff file.
*
* @return the metadata
*/
public GeoTiffIIOMetadataDecoder getMetadata() {
GeoTiffIIOMetadataDecoder metadata = null;
ImageReader reader = null;
boolean closeMe = true;
ImageInputStream stream = null;
try {
if ((source instanceof InputStream) || (source instanceof ImageInputStream)) {
closeMe = false;
}
if (source instanceof ImageInputStream) {
stream = (ImageInputStream) source;
} else {
inStreamSPI = ImageIOExt.getImageInputStreamSPI(source);
if (inStreamSPI == null) {
throw new IllegalArgumentException("No input stream for the provided source");
}
stream =
inStreamSPI.createInputStreamInstance(
source, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
}
if (stream == null) {
throw new IllegalArgumentException("No input stream for the provided source");
}
stream.mark();
reader = READER_SPI.createReaderInstance();
reader.setInput(stream);
final IIOMetadata iioMetadata = reader.getImageMetadata(0);
metadata = new GeoTiffIIOMetadataDecoder(iioMetadata);
} catch (IOException e) {
if (LOGGER.isLoggable(Level.SEVERE)) {
LOGGER.log(Level.SEVERE, e.getMessage(), e);
}
} finally {
if (reader != null)
try {
reader.dispose();
} catch (Throwable t) {
}
if (stream != null) {
try {
stream.reset();
} catch (Throwable t) {
}
if (closeMe) {
try {
stream.close();
} catch (Throwable t) {
}
}
}
}
return metadata;
}
BufferedImage getThumbnail(ImageInputStream iis, JPEGImageReader reader) throws IOException {
iis.mark();
iis.seek(streamPos);
JPEGImageReader thumbReader = new JPEGImageReader(null);
thumbReader.setInput(iis);
thumbReader.addIIOReadProgressListener(new ThumbnailReadListener(reader));
BufferedImage ret = thumbReader.read(0, null);
thumbReader.dispose();
iis.reset();
return ret;
}
public boolean canDecodeInput(Object source) throws IOException {
if (!(source instanceof ImageInputStream)) {
return false;
}
ImageInputStream stream = (ImageInputStream) source;
byte[] b = new byte[2];
stream.mark();
stream.readFully(b);
stream.reset();
return (b[0] == 0x42) && (b[1] == 0x4d);
}
BufferedImage getThumbnail(ImageInputStream iis, JPEGImageReader reader) throws IOException {
iis.mark();
iis.seek(streamPos);
DataBufferByte buffer = new DataBufferByte(getLength());
readByteBuffer(iis, buffer.getData(), reader, 1.0F, 0.0F);
iis.reset();
WritableRaster raster =
Raster.createInterleavedRaster(
buffer, thumbWidth, thumbHeight, thumbWidth * 3, 3, new int[] {0, 1, 2}, null);
ColorModel cm =
new ComponentColorModel(
JPEG.JCS.sRGB, false, false, ColorModel.OPAQUE, DataBuffer.TYPE_BYTE);
return new BufferedImage(cm, raster, false, null);
}
BufferedImage getThumbnail(ImageInputStream iis, JPEGImageReader reader) throws IOException {
iis.mark();
iis.seek(streamPos);
// read the palette
byte[] palette = new byte[PALETTE_SIZE];
float palettePart = ((float) PALETTE_SIZE) / getLength();
readByteBuffer(iis, palette, reader, palettePart, 0.0F);
DataBufferByte buffer = new DataBufferByte(thumbWidth * thumbHeight);
readByteBuffer(iis, buffer.getData(), reader, 1.0F - palettePart, palettePart);
iis.read();
iis.reset();
IndexColorModel cm = new IndexColorModel(8, 256, palette, 0, false);
SampleModel sm = cm.createCompatibleSampleModel(thumbWidth, thumbHeight);
WritableRaster raster = Raster.createWritableRaster(sm, buffer, null);
return new BufferedImage(cm, raster, false, null);
}
public boolean canDecodeInput(Object input) throws IOException {
if (!(input instanceof ImageInputStream)) {
return false;
}
ImageInputStream stream = (ImageInputStream) input;
byte[] b = new byte[4];
stream.mark();
stream.readFully(b);
stream.reset();
return ((b[0] == (byte) 0x49
&& b[1] == (byte) 0x49
&& b[2] == (byte) 0x2a
&& b[3] == (byte) 0x00)
|| (b[0] == (byte) 0x4d
&& b[1] == (byte) 0x4d
&& b[2] == (byte) 0x00
&& b[3] == (byte) 0x2a));
}
public void initialize(
ImageInputStream stream, boolean ignoreUnknownFields, final boolean isBTIFF)
throws IOException {
removeTIFFFields();
List tagSetList = getTagSetList();
final long numEntries;
if (isBTIFF) numEntries = stream.readLong();
else numEntries = stream.readUnsignedShort();
for (int i = 0; i < numEntries; i++) {
// Read tag number, value type, and value count.
int tag = stream.readUnsignedShort();
int type = stream.readUnsignedShort();
int count;
if (isBTIFF) {
long count_ = stream.readLong();
count = (int) count_;
if (count != count_)
throw new IllegalArgumentException("unable to use long number of values");
} else count = (int) stream.readUnsignedInt();
// Get the associated TIFFTag.
TIFFTag tiffTag = getTag(tag, tagSetList);
// Ignore unknown fields.
if (ignoreUnknownFields && tiffTag == null) {
// Skip the value/offset so as to leave the stream
// position at the start of the next IFD entry.
if (isBTIFF) stream.skipBytes(8);
else stream.skipBytes(4);
// XXX Warning message ...
// Continue with the next IFD entry.
continue;
}
long nextTagOffset;
if (isBTIFF) {
nextTagOffset = stream.getStreamPosition() + 8;
int sizeOfType = TIFFTag.getSizeOfType(type);
if (count * sizeOfType > 8) {
long value = stream.readLong();
stream.seek(value);
}
} else {
nextTagOffset = stream.getStreamPosition() + 4;
int sizeOfType = TIFFTag.getSizeOfType(type);
if (count * sizeOfType > 4) {
long value = stream.readUnsignedInt();
stream.seek(value);
}
}
if (tag == BaselineTIFFTagSet.TAG_STRIP_BYTE_COUNTS
|| tag == BaselineTIFFTagSet.TAG_TILE_BYTE_COUNTS
|| tag == BaselineTIFFTagSet.TAG_JPEG_INTERCHANGE_FORMAT_LENGTH) {
this.stripOrTileByteCountsPosition = stream.getStreamPosition();
if (LAZY_LOADING) {
type = type == TIFFTag.TIFF_LONG ? TIFFTag.TIFF_LAZY_LONG : TIFFTag.TIFF_LAZY_LONG8;
}
} else if (tag == BaselineTIFFTagSet.TAG_STRIP_OFFSETS
|| tag == BaselineTIFFTagSet.TAG_TILE_OFFSETS
|| tag == BaselineTIFFTagSet.TAG_JPEG_INTERCHANGE_FORMAT) {
this.stripOrTileOffsetsPosition = stream.getStreamPosition();
if (LAZY_LOADING) {
type = type == TIFFTag.TIFF_LONG ? TIFFTag.TIFF_LAZY_LONG : TIFFTag.TIFF_LAZY_LONG8;
}
}
Object obj = null;
try {
switch (type) {
case TIFFTag.TIFF_BYTE:
case TIFFTag.TIFF_SBYTE:
case TIFFTag.TIFF_UNDEFINED:
case TIFFTag.TIFF_ASCII:
byte[] bvalues = new byte[count];
stream.readFully(bvalues, 0, count);
if (type == TIFFTag.TIFF_ASCII) {
// Can be multiple strings
final List<String> v = new ArrayList<String>();
boolean inString = false;
int prevIndex = 0;
for (int index = 0; index <= count; index++) {
if (index < count && bvalues[index] != 0) {
if (!inString) {
// start of string
prevIndex = index;
inString = true;
}
} else { // null or special case at end of string
if (inString) {
// end of string
final String s = new String(bvalues, prevIndex, index - prevIndex);
v.add(s);
inString = false;
}
}
}
count = v.size();
String[] strings;
if (count != 0) {
strings = new String[count];
for (int c = 0; c < count; c++) {
strings[c] = v.get(c);
}
} else {
// This case has been observed when the value of
// 'count' recorded in the field is non-zero but
// the value portion contains all nulls.
count = 1;
strings = new String[] {""};
}
obj = strings;
} else {
obj = bvalues;
}
break;
case TIFFTag.TIFF_SHORT:
char[] cvalues = new char[count];
for (int j = 0; j < count; j++) {
cvalues[j] = (char) (stream.readUnsignedShort());
}
obj = cvalues;
break;
case TIFFTag.TIFF_LONG:
case TIFFTag.TIFF_IFD_POINTER:
long[] lvalues = new long[count];
for (int j = 0; j < count; j++) {
lvalues[j] = stream.readUnsignedInt();
}
obj = lvalues;
break;
case TIFFTag.TIFF_RATIONAL:
long[][] llvalues = new long[count][2];
for (int j = 0; j < count; j++) {
llvalues[j][0] = stream.readUnsignedInt();
llvalues[j][1] = stream.readUnsignedInt();
}
obj = llvalues;
break;
case TIFFTag.TIFF_SSHORT:
short[] svalues = new short[count];
for (int j = 0; j < count; j++) {
svalues[j] = stream.readShort();
}
obj = svalues;
break;
case TIFFTag.TIFF_SLONG:
int[] ivalues = new int[count];
for (int j = 0; j < count; j++) {
ivalues[j] = stream.readInt();
}
obj = ivalues;
break;
case TIFFTag.TIFF_SRATIONAL:
int[][] iivalues = new int[count][2];
for (int j = 0; j < count; j++) {
iivalues[j][0] = stream.readInt();
iivalues[j][1] = stream.readInt();
}
obj = iivalues;
break;
case TIFFTag.TIFF_FLOAT:
float[] fvalues = new float[count];
for (int j = 0; j < count; j++) {
fvalues[j] = stream.readFloat();
}
obj = fvalues;
break;
case TIFFTag.TIFF_DOUBLE:
double[] dvalues = new double[count];
for (int j = 0; j < count; j++) {
dvalues[j] = stream.readDouble();
}
obj = dvalues;
break;
case TIFFTag.TIFF_LONG8:
case TIFFTag.TIFF_SLONG8:
case TIFFTag.TIFF_IFD8:
long[] lBvalues = new long[count];
for (int j = 0; j < count; j++) {
lBvalues[j] = stream.readLong();
}
obj = lBvalues;
break;
case TIFFTag.TIFF_LAZY_LONG8:
case TIFFTag.TIFF_LAZY_LONG:
obj = new TIFFLazyData(stream, type, count);
break;
default:
// XXX Warning
break;
}
} catch (EOFException eofe) {
// The TIFF 6.0 fields have tag numbers less than or equal
// to 532 (ReferenceBlackWhite) or equal to 33432 (Copyright).
// If there is an error reading a baseline tag, then re-throw
// the exception and fail; otherwise continue with the next
// field.
if (BaselineTIFFTagSet.getInstance().getTag(tag) == null) {
throw eofe;
}
}
if (tiffTag == null) {
// XXX Warning: unknown tag
} else if (!tiffTag.isDataTypeOK(type)) {
// XXX Warning: bad data type
} else if (tiffTag.isIFDPointer() && obj != null) {
stream.mark();
stream.seek(((long[]) obj)[0]);
List tagSets = new ArrayList(1);
tagSets.add(tiffTag.getTagSet());
TIFFIFD subIFD = new TIFFIFD(tagSets);
// XXX Use same ignore policy for sub-IFD fields?
subIFD.initialize(stream, ignoreUnknownFields);
obj = subIFD;
stream.reset();
}
if (tiffTag == null) {
tiffTag = new TIFFTag(null, tag, 1 << type, null);
}
// Add the field if its contents have been initialized which
// will not be the case if an EOF was ignored above.
if (obj != null) {
TIFFField f = new TIFFField(tiffTag, type, count, obj);
addTIFFField(f);
}
stream.seek(nextTagOffset);
}
this.lastPosition = stream.getStreamPosition();
}
private void readHeader() throws IOException {
if (gotHeader) {
iis.seek(128);
return;
}
metadata = new PCXMetadata();
manufacturer = iis.readByte(); // manufacturer
if (manufacturer != MANUFACTURER) throw new IllegalStateException("image is not a PCX file");
metadata.version = iis.readByte(); // version
encoding = iis.readByte(); // encoding
if (encoding != ENCODING)
throw new IllegalStateException("image is not a PCX file, invalid encoding " + encoding);
metadata.bitsPerPixel = iis.readByte();
metadata.xmin = iis.readShort();
metadata.ymin = iis.readShort();
xmax = iis.readShort();
ymax = iis.readShort();
metadata.hdpi = iis.readShort();
metadata.vdpi = iis.readShort();
iis.readFully(smallPalette);
iis.readByte(); // reserved
colorPlanes = iis.readByte();
bytesPerLine = iis.readShort();
paletteType = iis.readShort();
metadata.hsize = iis.readShort();
metadata.vsize = iis.readShort();
iis.skipBytes(54); // skip filler
width = xmax - metadata.xmin + 1;
height = ymax - metadata.ymin + 1;
if (colorPlanes == 1) {
if (paletteType == PALETTE_GRAYSCALE) {
ColorSpace cs = ColorSpace.getInstance(ColorSpace.CS_GRAY);
int[] nBits = {8};
colorModel =
new ComponentColorModel(
cs, nBits, false, false, Transparency.OPAQUE, DataBuffer.TYPE_BYTE);
sampleModel =
new ComponentSampleModel(DataBuffer.TYPE_BYTE, width, height, 1, width, new int[] {0});
} else {
if (metadata.bitsPerPixel == 8) {
// read palette from end of file, then reset back to image data
iis.mark();
if (iis.length() == -1) {
// read until eof, and work backwards
while (iis.read() != -1) ;
iis.seek(iis.getStreamPosition() - 256 * 3 - 1);
} else {
iis.seek(iis.length() - 256 * 3 - 1);
}
int palletteMagic = iis.read();
if (palletteMagic != 12)
processWarningOccurred(
"Expected palette magic number 12; instead read "
+ palletteMagic
+ " from this image.");
iis.readFully(largePalette);
iis.reset();
colorModel = new IndexColorModel(metadata.bitsPerPixel, 256, largePalette, 0, false);
sampleModel = colorModel.createCompatibleSampleModel(width, height);
} else {
int msize = metadata.bitsPerPixel == 1 ? 2 : 16;
colorModel = new IndexColorModel(metadata.bitsPerPixel, msize, smallPalette, 0, false);
sampleModel = colorModel.createCompatibleSampleModel(width, height);
}
}
} else {
ColorSpace cs = ColorSpace.getInstance(ColorSpace.CS_sRGB);
int[] nBits = {8, 8, 8};
colorModel =
new ComponentColorModel(
cs, nBits, false, false, Transparency.OPAQUE, DataBuffer.TYPE_BYTE);
sampleModel =
new ComponentSampleModel(
DataBuffer.TYPE_BYTE,
width,
height,
1,
width * colorPlanes,
new int[] {0, width, width * 2});
}
originalSampleModel = sampleModel;
originalColorModel = colorModel;
gotHeader = true;
}
public synchronized void reset() throws IOException {
src.reset();
}
private void decodeTile(int ti, int tj, int band) throws IOException {
if (DEBUG) {
System.out.println("decodeTile(" + ti + "," + tj + "," + band + ")");
}
// Compute the region covered by the strip or tile
Rectangle tileRect =
new Rectangle(
ti * tileOrStripWidth, tj * tileOrStripHeight, tileOrStripWidth, tileOrStripHeight);
// Clip against the image bounds if the image is not tiled. If it
// is tiled, the tile may legally extend beyond the image bounds.
if (!isImageTiled(currIndex)) {
tileRect = tileRect.intersection(new Rectangle(0, 0, width, height));
}
// Return if the intersection is empty.
if (tileRect.width <= 0 || tileRect.height <= 0) {
return;
}
int srcMinX = tileRect.x;
int srcMinY = tileRect.y;
int srcWidth = tileRect.width;
int srcHeight = tileRect.height;
// Determine dest region that can be derived from the
// source region
dstMinX = iceil(srcMinX - sourceXOffset, srcXSubsampling);
int dstMaxX = ifloor(srcMinX + srcWidth - 1 - sourceXOffset, srcXSubsampling);
dstMinY = iceil(srcMinY - sourceYOffset, srcYSubsampling);
int dstMaxY = ifloor(srcMinY + srcHeight - 1 - sourceYOffset, srcYSubsampling);
dstWidth = dstMaxX - dstMinX + 1;
dstHeight = dstMaxY - dstMinY + 1;
dstMinX += dstXOffset;
dstMinY += dstYOffset;
// Clip against image bounds
Rectangle dstRect =
new Rectangle(
dstMinX, dstMinY,
dstWidth, dstHeight);
dstRect = dstRect.intersection(theImage.getRaster().getBounds());
dstMinX = dstRect.x;
dstMinY = dstRect.y;
dstWidth = dstRect.width;
dstHeight = dstRect.height;
if (dstWidth <= 0 || dstHeight <= 0) {
return;
}
// Backwards map dest region to source to determine
// active source region
int activeSrcMinX = (dstMinX - dstXOffset) * srcXSubsampling + sourceXOffset;
int sxmax = (dstMinX + dstWidth - 1 - dstXOffset) * srcXSubsampling + sourceXOffset;
int activeSrcWidth = sxmax - activeSrcMinX + 1;
int activeSrcMinY = (dstMinY - dstYOffset) * srcYSubsampling + sourceYOffset;
int symax = (dstMinY + dstHeight - 1 - dstYOffset) * srcYSubsampling + sourceYOffset;
int activeSrcHeight = symax - activeSrcMinY + 1;
decompressor.setSrcMinX(srcMinX);
decompressor.setSrcMinY(srcMinY);
decompressor.setSrcWidth(srcWidth);
decompressor.setSrcHeight(srcHeight);
decompressor.setDstMinX(dstMinX);
decompressor.setDstMinY(dstMinY);
decompressor.setDstWidth(dstWidth);
decompressor.setDstHeight(dstHeight);
decompressor.setActiveSrcMinX(activeSrcMinX);
decompressor.setActiveSrcMinY(activeSrcMinY);
decompressor.setActiveSrcWidth(activeSrcWidth);
decompressor.setActiveSrcHeight(activeSrcHeight);
int tileIndex = tj * tilesAcross + ti;
if (planarConfiguration == BaselineTIFFTagSet.PLANAR_CONFIGURATION_PLANAR) {
tileIndex += band * tilesAcross * tilesDown;
}
long offset = getTileOrStripOffset(tileIndex);
long byteCount = getTileOrStripByteCount(tileIndex);
//
// Attempt to handle truncated streams, i.e., where reading the
// compressed strip or tile would result in an EOFException. The
// number of bytes to read is clamped to the number available
// from the stream starting at the indicated position in the hope
// that the decompressor will handle it.
//
long streamLength = stream.length();
if (streamLength > 0 && offset + byteCount > streamLength) {
processWarningOccurred("Attempting to process truncated stream.");
if (Math.max(byteCount = streamLength - offset, 0) == 0) {
processWarningOccurred("No bytes in strip/tile: skipping.");
return;
}
}
decompressor.setStream(stream);
decompressor.setOffset(offset);
decompressor.setByteCount((int) byteCount);
decompressor.beginDecoding();
stream.mark();
decompressor.decode();
stream.reset();
}
/**
* Initializes these instance variables from the image metadata:
*
* <pre>
* compression
* width
* height
* samplesPerPixel
* numBands
* colorMap
* photometricInterpretation
* sampleFormat
* bitsPerSample
* extraSamples
* tileOrStripWidth
* tileOrStripHeight
* </pre>
*/
private void initializeFromMetadata() {
TIFFField f;
// Compression
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_COMPRESSION);
if (f == null) {
processWarningOccurred("Compression field is missing; assuming no compression");
compression = BaselineTIFFTagSet.COMPRESSION_NONE;
} else {
compression = f.getAsInt(0);
}
// Whether key dimensional information is absent.
boolean isMissingDimension = false;
// ImageWidth -> width
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_IMAGE_WIDTH);
if (f != null) {
this.width = f.getAsInt(0);
} else {
processWarningOccurred("ImageWidth field is missing.");
isMissingDimension = true;
}
// ImageLength -> height
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_IMAGE_LENGTH);
if (f != null) {
this.height = f.getAsInt(0);
} else {
processWarningOccurred("ImageLength field is missing.");
isMissingDimension = true;
}
// SamplesPerPixel
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_SAMPLES_PER_PIXEL);
if (f != null) {
samplesPerPixel = f.getAsInt(0);
} else {
samplesPerPixel = 1;
isMissingDimension = true;
}
// If any dimension is missing and there is a JPEG stream available
// get the information from it.
int defaultBitDepth = 1;
if (isMissingDimension
&& (f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_JPEG_INTERCHANGE_FORMAT))
!= null) {
Iterator iter = ImageIO.getImageReadersByFormatName("JPEG");
if (iter != null && iter.hasNext()) {
ImageReader jreader = (ImageReader) iter.next();
try {
stream.mark();
stream.seek(f.getAsLong(0));
jreader.setInput(stream);
if (imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_IMAGE_WIDTH) == null) {
this.width = jreader.getWidth(0);
}
if (imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_IMAGE_LENGTH) == null) {
this.height = jreader.getHeight(0);
}
ImageTypeSpecifier imageType = jreader.getRawImageType(0);
if (imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_SAMPLES_PER_PIXEL) == null) {
this.samplesPerPixel = imageType.getSampleModel().getNumBands();
}
stream.reset();
defaultBitDepth = imageType.getColorModel().getComponentSize(0);
} catch (IOException e) {
// Ignore it and proceed: an error will occur later.
}
jreader.dispose();
}
}
if (samplesPerPixel < 1) {
processWarningOccurred("Samples per pixel < 1!");
}
// SamplesPerPixel -> numBands
numBands = samplesPerPixel;
// ColorMap
this.colorMap = null;
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_COLOR_MAP);
if (f != null) {
// Grab color map
colorMap = f.getAsChars();
}
// PhotometricInterpretation
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_PHOTOMETRIC_INTERPRETATION);
if (f == null) {
if (compression == BaselineTIFFTagSet.COMPRESSION_CCITT_RLE
|| compression == BaselineTIFFTagSet.COMPRESSION_CCITT_T_4
|| compression == BaselineTIFFTagSet.COMPRESSION_CCITT_T_6) {
processWarningOccurred(
"PhotometricInterpretation field is missing; " + "assuming WhiteIsZero");
photometricInterpretation = BaselineTIFFTagSet.PHOTOMETRIC_INTERPRETATION_WHITE_IS_ZERO;
} else if (this.colorMap != null) {
photometricInterpretation = BaselineTIFFTagSet.PHOTOMETRIC_INTERPRETATION_PALETTE_COLOR;
} else if (samplesPerPixel == 3 || samplesPerPixel == 4) {
photometricInterpretation = BaselineTIFFTagSet.PHOTOMETRIC_INTERPRETATION_RGB;
} else {
processWarningOccurred(
"PhotometricInterpretation field is missing; " + "assuming BlackIsZero");
photometricInterpretation = BaselineTIFFTagSet.PHOTOMETRIC_INTERPRETATION_BLACK_IS_ZERO;
}
} else {
photometricInterpretation = f.getAsInt(0);
}
// SampleFormat
boolean replicateFirst = false;
int first = -1;
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_SAMPLE_FORMAT);
sampleFormat = new int[samplesPerPixel];
replicateFirst = false;
if (f == null) {
replicateFirst = true;
first = BaselineTIFFTagSet.SAMPLE_FORMAT_UNDEFINED;
} else if (f.getCount() != samplesPerPixel) {
replicateFirst = true;
first = f.getAsInt(0);
}
for (int i = 0; i < samplesPerPixel; i++) {
sampleFormat[i] = replicateFirst ? first : f.getAsInt(i);
if (sampleFormat[i] != BaselineTIFFTagSet.SAMPLE_FORMAT_UNSIGNED_INTEGER
&& sampleFormat[i] != BaselineTIFFTagSet.SAMPLE_FORMAT_SIGNED_INTEGER
&& sampleFormat[i] != BaselineTIFFTagSet.SAMPLE_FORMAT_FLOATING_POINT
&& sampleFormat[i] != BaselineTIFFTagSet.SAMPLE_FORMAT_UNDEFINED) {
processWarningOccurred("Illegal value for SAMPLE_FORMAT, assuming SAMPLE_FORMAT_UNDEFINED");
sampleFormat[i] = BaselineTIFFTagSet.SAMPLE_FORMAT_UNDEFINED;
}
}
// BitsPerSample
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_BITS_PER_SAMPLE);
this.bitsPerSample = new int[samplesPerPixel];
replicateFirst = false;
if (f == null) {
replicateFirst = true;
first = defaultBitDepth;
} else if (f.getCount() != samplesPerPixel) {
replicateFirst = true;
first = f.getAsInt(0);
}
for (int i = 0; i < samplesPerPixel; i++) {
// Replicate initial value if not enough values provided
bitsPerSample[i] = replicateFirst ? first : f.getAsInt(i);
if (DEBUG) {
System.out.println("bitsPerSample[" + i + "] = " + bitsPerSample[i]);
}
}
// ExtraSamples
this.extraSamples = null;
f = imageMetadata.getTIFFField(BaselineTIFFTagSet.TAG_EXTRA_SAMPLES);
if (f != null) {
extraSamples = f.getAsInts();
}
// System.out.println("colorMap = " + colorMap);
// if (colorMap != null) {
// for (int i = 0; i < colorMap.length; i++) {
// System.out.println("colorMap[" + i + "] = " + (int)(colorMap[i]));
// }
// }
}
private void initializeRead(int imageIndex, J2KImageReadParamJava param, J2KMetadata metadata) {
try {
iis.mark();
in = new IISRandomAccessIO(iis);
// **** File Format ****
// If the codestream is wrapped in the jp2 fileformat, Read the
// file format wrapper
ff = new FileFormatReader(in, metadata);
ff.readFileFormat();
in.seek(ff.getFirstCodeStreamPos());
hi = new HeaderInfo();
try {
hd = new HeaderDecoder(in, j2krparam, hi);
} catch (EOFException e) {
throw new RuntimeException(I18N.getString("J2KReadState2"));
} catch (IOException ioe) {
throw new RuntimeException(ioe);
}
this.width = hd.getImgWidth();
this.height = hd.getImgHeight();
Rectangle sourceRegion = param.getSourceRegion();
sourceOrigin = new Point();
sourceRegion = new Rectangle(hd.getImgULX(), hd.getImgULY(), this.width, this.height);
// if the subsample rate for components are not consistent
boolean compConsistent = true;
stepX = hd.getCompSubsX(0);
stepY = hd.getCompSubsY(0);
for (int i = 1; i < nComp; i++) {
if (stepX != hd.getCompSubsX(i) || stepY != hd.getCompSubsY(i))
throw new RuntimeException(I18N.getString("J2KReadState12"));
}
// Get minimum number of resolution levels available across
// all tile-components.
int minResLevels = hd.getDecoderSpecs().dls.getMin();
// Set current resolution level.
this.resolution = param != null ? param.getResolution() : minResLevels;
if (resolution < 0 || resolution > minResLevels) {
resolution = minResLevels;
}
// Convert source region to lower resolution level.
if (resolution != minResLevels || stepX != 1 || stepY != 1) {
sourceRegion =
J2KImageReader.getReducedRect(sourceRegion, minResLevels, resolution, stepX, stepY);
}
destinationRegion = (Rectangle) sourceRegion.clone();
J2KImageReader.computeRegionsWrapper(
param,
false,
this.width,
this.height,
param.getDestination(),
sourceRegion,
destinationRegion);
sourceOrigin = new Point(sourceRegion.x, sourceRegion.y);
scaleX = param.getSourceXSubsampling();
scaleY = param.getSourceYSubsampling();
xOffset = param.getSubsamplingXOffset();
yOffset = param.getSubsamplingYOffset();
this.width = destinationRegion.width;
this.height = destinationRegion.height;
Point tileOffset = hd.getTilingOrigin(null);
this.tileWidth = hd.getNomTileWidth();
this.tileHeight = hd.getNomTileHeight();
// Convert tile 0 to lower resolution level.
if (resolution != minResLevels || stepX != 1 || stepY != 1) {
Rectangle tileRect = new Rectangle(tileOffset);
tileRect.width = tileWidth;
tileRect.height = tileHeight;
tileRect = J2KImageReader.getReducedRect(tileRect, minResLevels, resolution, stepX, stepY);
tileOffset = tileRect.getLocation();
tileWidth = tileRect.width;
tileHeight = tileRect.height;
}
tileXOffset = tileOffset.x;
tileYOffset = tileOffset.y;
// Set the tile step sizes. These values are used because it
// is possible that tiles will be empty. In particular at lower
// resolution levels when subsampling is used this may be the
// case. This method of calculation will work at least for
// Profile-0 images.
if (tileWidth * (1 << (minResLevels - resolution)) * stepX > hd.getNomTileWidth()) {
tileStepX =
(tileWidth * (1 << (minResLevels - resolution)) * stepX + hd.getNomTileWidth() - 1)
/ hd.getNomTileWidth();
} else {
tileStepX = 1;
}
if (tileHeight * (1 << (minResLevels - resolution)) * stepY > hd.getNomTileHeight()) {
tileStepY =
(tileHeight * (1 << (minResLevels - resolution)) * stepY + hd.getNomTileHeight() - 1)
/ hd.getNomTileHeight();
} else {
tileStepY = 1;
}
if (!destinationRegion.equals(sourceRegion)) noTransform = false;
// **** Header decoder ****
// Instantiate header decoder and read main header
decSpec = hd.getDecoderSpecs();
// **** Instantiate decoding chain ****
// Get demixed bitdepths
nComp = hd.getNumComps();
int[] depth = new int[nComp];
for (int i = 0; i < nComp; i++) depth[i] = hd.getOriginalBitDepth(i);
// Get channel mapping
ChannelDefinitionBox cdb = null;
if (metadata != null)
cdb = (ChannelDefinitionBox) metadata.getElement("JPEG2000ChannelDefinitionBox");
channelMap = new int[nComp];
if (cdb != null && metadata.getElement("JPEG2000PaletteBox") == null) {
short[] assoc = cdb.getAssociation();
short[] types = cdb.getTypes();
short[] channels = cdb.getChannel();
for (int i = 0; i < types.length; i++)
if (types[i] == 0) channelMap[channels[i]] = assoc[i] - 1;
else if (types[i] == 1 || types[i] == 2) channelMap[channels[i]] = channels[i];
} else {
for (int i = 0; i < nComp; i++) channelMap[i] = i;
}
// **** Bitstream reader ****
try {
boolean logJJ2000Messages = Boolean.getBoolean("jj2000.j2k.decoder.log");
breader =
BitstreamReaderAgent.createInstance(in, hd, j2krparam, decSpec, logJJ2000Messages, hi);
} catch (IOException e) {
throw new RuntimeException(
I18N.getString("J2KReadState3")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState4")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Entropy decoder ****
try {
entdec = hd.createEntropyDecoder(breader, j2krparam);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState5")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** ROI de-scaler ****
try {
roids = hd.createROIDeScaler(entdec, j2krparam, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState6")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Dequantizer ****
try {
deq = hd.createDequantizer(roids, depth, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState7")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
// **** Inverse wavelet transform ***
try {
// full page inverse wavelet transform
invWT = InverseWT.createInstance(deq, decSpec);
} catch (IllegalArgumentException e) {
throw new RuntimeException(
I18N.getString("J2KReadState8")
+ " "
+ ((e.getMessage() != null) ? (":\n" + e.getMessage()) : ""));
}
int res = breader.getImgRes();
int mrl = decSpec.dls.getMin();
invWT.setImgResLevel(res);
// **** Data converter **** (after inverse transform module)
converter = new ImgDataConverter(invWT, 0);
// **** Inverse component transformation ****
ictransf = new InvCompTransf(converter, decSpec, depth);
// If the destination band is set used it
sourceBands = j2krparam.getSourceBands();
if (sourceBands == null) {
sourceBands = new int[nComp];
for (int i = 0; i < nComp; i++) sourceBands[i] = i;
}
nComp = sourceBands.length;
destinationBands = j2krparam.getDestinationBands();
if (destinationBands == null) {
destinationBands = new int[nComp];
for (int i = 0; i < nComp; i++) destinationBands[i] = i;
}
J2KImageReader.checkReadParamBandSettingsWrapper(
param, hd.getNumComps(), destinationBands.length);
levelShift = new int[nComp];
minValues = new int[nComp];
maxValues = new int[nComp];
fracBits = new int[nComp];
dataBlocks = new DataBlkInt[nComp];
depth = new int[nComp];
bandOffsets = new int[nComp];
maxDepth = 0;
isSigned = false;
for (int i = 0; i < nComp; i++) {
depth[i] = hd.getOriginalBitDepth(sourceBands[i]);
if (depth[i] > maxDepth) maxDepth = depth[i];
dataBlocks[i] = new DataBlkInt();
// XXX: may need to change if ChannelDefinition is used to
// define the color channels, such as BGR order
bandOffsets[i] = i;
if (hd.isOriginalSigned(sourceBands[i])) isSigned = true;
else {
levelShift[i] = 1 << (ictransf.getNomRangeBits(sourceBands[i]) - 1);
}
// Get the number of bits in the image, and decide what the max
// value should be, depending on whether it is signed or not
int nomRangeBits = ictransf.getNomRangeBits(sourceBands[i]);
maxValues[i] = (1 << (isSigned == true ? (nomRangeBits - 1) : nomRangeBits)) - 1;
minValues[i] = isSigned ? -(maxValues[i] + 1) : 0;
fracBits[i] = ictransf.getFixedPoint(sourceBands[i]);
}
iis.reset();
} catch (IllegalArgumentException e) {
throw new RuntimeException(e.getMessage(), e);
} catch (Error e) {
if (e.getMessage() != null) throw new RuntimeException(e.getMessage(), e);
else {
throw new RuntimeException(I18N.getString("J2KReadState9"), e);
}
} catch (RuntimeException e) {
if (e.getMessage() != null)
throw new RuntimeException(I18N.getString("J2KReadState10") + " " + e.getMessage(), e);
else {
throw new RuntimeException(I18N.getString("J2KReadState10"), e);
}
} catch (Throwable e) {
throw new RuntimeException(I18N.getString("J2KReadState10"), e);
}
}
private void init(
final BoundingBox granuleBBOX,
final URL granuleUrl,
final ImageReaderSpi suggestedSPI,
final Geometry inclusionGeometry,
final boolean heterogeneousGranules,
final boolean handleArtifactsFiltering) {
this.granuleBBOX = ReferencedEnvelope.reference(granuleBBOX);
this.granuleUrl = granuleUrl;
this.inclusionGeometry = inclusionGeometry;
this.handleArtifactsFiltering = handleArtifactsFiltering;
filterMe = handleArtifactsFiltering && inclusionGeometry != null;
// create the base grid to world transformation
ImageInputStream inStream = null;
ImageReader reader = null;
try {
//
// get info about the raster we have to read
//
// get a stream
if (cachedStreamSPI == null) {
cachedStreamSPI = ImageIOExt.getImageInputStreamSPI(granuleUrl, true);
if (cachedStreamSPI == null) {
final File file = DataUtilities.urlToFile(granuleUrl);
if (file != null) {
if (LOGGER.isLoggable(Level.WARNING)) {
LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
}
}
throw new IllegalArgumentException(
"Unable to get an input stream for the provided granule " + granuleUrl.toString());
}
}
assert cachedStreamSPI != null : "no cachedStreamSPI available!";
inStream =
cachedStreamSPI.createInputStreamInstance(
granuleUrl, ImageIO.getUseCache(), ImageIO.getCacheDirectory());
if (inStream == null) {
final File file = DataUtilities.urlToFile(granuleUrl);
if (file != null) {
if (LOGGER.isLoggable(Level.WARNING)) {
LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
}
}
throw new IllegalArgumentException(
"Unable to get an input stream for the provided file " + granuleUrl.toString());
}
// get a reader and try to cache the suggested SPI first
if (cachedReaderSPI == null) {
inStream.mark();
if (suggestedSPI != null && suggestedSPI.canDecodeInput(inStream)) {
cachedReaderSPI = suggestedSPI;
inStream.reset();
} else {
inStream.mark();
reader = ImageIOExt.getImageioReader(inStream);
if (reader != null) cachedReaderSPI = reader.getOriginatingProvider();
inStream.reset();
}
}
reader = cachedReaderSPI.createReaderInstance();
if (reader == null)
throw new IllegalArgumentException(
"Unable to get an ImageReader for the provided file " + granuleUrl.toString());
reader.setInput(inStream);
// get selected level and base level dimensions
final Rectangle originalDimension = Utils.getDimension(0, reader);
// build the g2W for this tile, in principle we should get it
// somehow from the tile itself or from the index, but at the moment
// we do not have such info, hence we assume that it is a simple
// scale and translate
final GridToEnvelopeMapper geMapper =
new GridToEnvelopeMapper(new GridEnvelope2D(originalDimension), granuleBBOX);
geMapper.setPixelAnchor(
PixelInCell
.CELL_CENTER); // this is the default behavior but it is nice to write it down anyway
this.baseGridToWorld = geMapper.createAffineTransform();
try {
if (inclusionGeometry != null) {
geMapper.setPixelAnchor(PixelInCell.CELL_CORNER);
Geometry mapped = JTS.transform(inclusionGeometry, geMapper.createTransform().inverse());
this.granuleROIShape = new ROIGeometry(mapped);
}
} catch (TransformException e1) {
throw new IllegalArgumentException(e1);
}
// add the base level
this.granuleLevels.put(
Integer.valueOf(0),
new GranuleOverviewLevelDescriptor(
1, 1, originalDimension.width, originalDimension.height));
////////////////////// Setting overviewController ///////////////////////
if (heterogeneousGranules) {
// //
//
// Right now we are setting up overviewsController by assuming that
// overviews are internal images as happens in TIFF images
// We can improve this by leveraging on coverageReaders
//
// //
// Getting the first level descriptor
final GranuleOverviewLevelDescriptor baseOverviewLevelDescriptor = granuleLevels.get(0);
// Variables initialization
final int numberOfOvervies = reader.getNumImages(true) - 1;
final AffineTransform2D baseG2W = baseOverviewLevelDescriptor.getGridToWorldTransform();
final int width = baseOverviewLevelDescriptor.getWidth();
final int height = baseOverviewLevelDescriptor.getHeight();
final double resX = AffineTransform2D.getScaleX0(baseG2W);
final double resY = AffineTransform2D.getScaleY0(baseG2W);
final double[] highestRes = new double[] {resX, resY};
final double[][] overviewsResolution = new double[numberOfOvervies][2];
// Populating overviews and initializing overviewsController
for (int i = 0; i < numberOfOvervies; i++) {
overviewsResolution[i][0] = (highestRes[0] * width) / reader.getWidth(i + 1);
overviewsResolution[i][1] = (highestRes[1] * height) / reader.getWidth(i + 1);
}
overviewsController =
new OverviewsController(highestRes, numberOfOvervies, overviewsResolution);
}
//////////////////////////////////////////////////////////////////////////
} catch (IllegalStateException e) {
throw new IllegalArgumentException(e);
} catch (IOException e) {
throw new IllegalArgumentException(e);
} finally {
// close/dispose stream and readers
try {
if (inStream != null) {
inStream.close();
}
} catch (Throwable e) {
throw new IllegalArgumentException(e);
} finally {
if (reader != null) {
reader.dispose();
}
}
}
}
/** {@inheritDoc} */
@Override
public Image loadImage(final ImageInfo info, final Map hints, final ImageSessionContext session)
throws ImageException, IOException {
if (!MimeConstants.MIME_JPEG.equals(info.getMimeType())) {
throw new IllegalArgumentException(
"ImageInfo must be from a image with MIME type: " + MimeConstants.MIME_JPEG);
}
ColorSpace colorSpace = null;
boolean appeFound = false;
int sofType = 0;
ByteArrayOutputStream iccStream = null;
final Source src = session.needSource(info.getOriginalURI());
final ImageInputStream in = ImageUtil.needImageInputStream(src);
final JPEGFile jpeg = new JPEGFile(in);
in.mark();
try {
outer:
while (true) {
int reclen;
final int segID = jpeg.readMarkerSegment();
if (log.isTraceEnabled()) {
log.trace("Seg Marker: " + Integer.toHexString(segID));
}
switch (segID) {
case EOI:
log.trace("EOI found. Stopping.");
break outer;
case SOS:
log.trace("SOS found. Stopping early."); // TODO Not sure if
// this is safe
break outer;
case SOI:
case NULL:
break;
case SOF0: // baseline
case SOF1: // extended sequential DCT
case SOF2: // progressive (since PDF 1.3)
case SOFA: // progressive (since PDF 1.3)
sofType = segID;
if (log.isTraceEnabled()) {
log.trace("SOF: " + Integer.toHexString(sofType));
}
in.mark();
try {
reclen = jpeg.readSegmentLength();
in.skipBytes(1); // data precision
in.skipBytes(2); // height
in.skipBytes(2); // width
final int numComponents = in.readUnsignedByte();
if (numComponents == 1) {
colorSpace = ColorSpace.getInstance(ColorSpace.CS_GRAY);
} else if (numComponents == 3) {
colorSpace = ColorSpace.getInstance(ColorSpace.CS_LINEAR_RGB);
} else if (numComponents == 4) {
colorSpace = ColorSpaces.getDeviceCMYKColorSpace();
} else {
throw new ImageException(
"Unsupported ColorSpace for image "
+ info
+ ". The number of components supported are 1, 3 and 4.");
}
} finally {
in.reset();
}
in.skipBytes(reclen);
break;
case APP2: // ICC (see ICC1V42.pdf)
in.mark();
try {
reclen = jpeg.readSegmentLength();
// Check for ICC profile
final byte[] iccString = new byte[11];
in.readFully(iccString);
in.skipBytes(1); // string terminator (null byte)
if ("ICC_PROFILE".equals(new String(iccString, "US-ASCII"))) {
in.skipBytes(2); // chunk sequence number and total
// number of chunks
final int payloadSize = reclen - 2 - 12 - 2;
if (ignoreColorProfile(hints)) {
log.debug("Ignoring ICC profile data in JPEG");
in.skipBytes(payloadSize);
} else {
final byte[] buf = new byte[payloadSize];
in.readFully(buf);
if (iccStream == null) {
if (log.isDebugEnabled()) {
log.debug("JPEG has an ICC profile");
final DataInputStream din =
new DataInputStream(new ByteArrayInputStream(buf));
log.debug("Declared ICC profile size: " + din.readInt());
}
// ICC profiles can be split into several
// chunks
// so collect in a byte array output stream
iccStream = new ByteArrayOutputStream();
}
iccStream.write(buf);
}
}
} finally {
in.reset();
}
in.skipBytes(reclen);
break;
case APPE: // Adobe-specific (see 5116.DCT_Filter.pdf)
in.mark();
try {
reclen = jpeg.readSegmentLength();
// Check for Adobe header
final byte[] adobeHeader = new byte[5];
in.readFully(adobeHeader);
if ("Adobe".equals(new String(adobeHeader, "US-ASCII"))) {
// The reason for reading the APPE marker is that
// Adobe Photoshop
// generates CMYK JPEGs with inverted values. The
// correct thing
// to do would be to interpret the values in the
// marker, but for now
// only assume that if APPE marker is present and
// colorspace is CMYK,
// the image is inverted.
appeFound = true;
}
} finally {
in.reset();
}
in.skipBytes(reclen);
break;
default:
jpeg.skipCurrentMarkerSegment();
}
}
} finally {
in.reset();
}
final ICC_Profile iccProfile = buildICCProfile(info, colorSpace, iccStream);
if (iccProfile == null && colorSpace == null) {
throw new ImageException("ColorSpace could not be identified for JPEG image " + info);
}
boolean invertImage = false;
if (appeFound && colorSpace.getType() == ColorSpace.TYPE_CMYK) {
if (log.isDebugEnabled()) {
log.debug(
"JPEG has an Adobe APPE marker. Note: CMYK Image will be inverted. ("
+ info.getOriginalURI()
+ ")");
}
invertImage = true;
}
final ImageRawJPEG rawImage =
new ImageRawJPEG(
info, ImageUtil.needInputStream(src), sofType, colorSpace, iccProfile, invertImage);
return rawImage;
}