/**
* @param statsQuery StatisticsQueryCondition
* @param statisticsStorage
* @param scoringExps Set of experiments that have at least one non-zero score for
* statisticsQuery. This is used retrieving efos to be displayed in heatmap when no query efvs
* exist (c.f. atlasStatisticsQueryService.getScoringAttributesForGenes())
* @return experiment counts corresponding for statsQuery
*/
public static Multiset<Integer> getExperimentCounts(
StatisticsQueryCondition statsQuery,
StatisticsStorage statisticsStorage,
Set<ExperimentInfo> scoringExps) {
long start = System.currentTimeMillis();
Multiset<Integer> counts =
StatisticsQueryUtils.scoreQuery(statsQuery, statisticsStorage, scoringExps);
long dur = System.currentTimeMillis() - start;
int numOfGenesWithCounts = counts.elementSet().size();
if (numOfGenesWithCounts > 0) {
log.debug(
"StatisticsQuery: "
+ statsQuery.prettyPrint()
+ " ==> result set size: "
+ numOfGenesWithCounts
+ " (duration: "
+ dur
+ " ms)");
}
return counts;
}
