public static void main(String[] args) {
try {
Genome g = Organism.findGenome(args[0]);
File blasttab = new File(args[1]);
ProbesFromPrimers pfp = new ProbesFromPrimers(g, blasttab);
Collection<NamedRegion> probes = pfp.parseProbes();
for (NamedRegion probe : probes) {
String probeName = probe.getName();
System.out.println(
String.format(
"%s\t%s\t%d\t%d", probeName, probe.getChrom(), probe.getStart(), probe.getEnd()));
}
} catch (NotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
