Example #1
0
 public static void traverseAMLforObjectNames(
     HashMap partialMap, Node currentNode, HashMap ObjDef_LinkId, HashMap ModelId_ModelType) {
   if (currentNode.hasChildNodes()) {
     for (int i = 0; i < currentNode.getChildNodes().getLength(); i++) {
       Node currentChild = currentNode.getChildNodes().item(i);
       if (currentChild.getNodeName().equals("Group")) {
         traverseAMLforObjectNames(partialMap, currentChild, ObjDef_LinkId, ModelId_ModelType);
       }
       if (currentChild.getNodeName().equals("Model")) {
         if (currentChild.hasAttributes()) {
           String mid = currentChild.getAttributes().getNamedItem("Model.ID").getNodeValue();
           String type = currentChild.getAttributes().getNamedItem("Model.Type").getNodeValue();
           ModelId_ModelType.put(mid, type);
         }
         // traverseAMLforObjectNames(partialMap, currentChild,
         // ObjDef_LinkId);
       }
       if (currentChild.getNodeName().equals("ObjDef")) {
         String id = currentChild.getAttributes().getNamedItem("ObjDef.ID").getNodeValue();
         NodeList currentChildren = currentChild.getChildNodes();
         String ObjName = "";
         for (int k = 0; k < currentChildren.getLength(); k++) {
           Node Child = currentChildren.item(k);
           if (!Child.getNodeName().equals("AttrDef")) {
             continue;
           } else if (!Child.getAttributes()
               .getNamedItem("AttrDef.Type")
               .getNodeValue()
               .equals("AT_NAME")) {
             continue;
           } else if (Child.hasChildNodes()) {
             for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
               if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
                 continue;
               } else {
                 ObjName = getTextContent(Child.getChildNodes().item(l));
                 ObjName = ObjName.replaceAll("\n", "\\\\n");
                 break;
               }
             }
           }
         }
         partialMap.put(id, ObjName);
         for (int j = 0; j < currentChild.getAttributes().getLength(); j++) {
           if (currentChild.getAttributes().item(j).getNodeName().equals("LinkedModels.IdRefs")) {
             String links =
                 currentChild.getAttributes().getNamedItem("LinkedModels.IdRefs").getNodeValue();
             /*
              * if (links.indexOf(" ") > -1) {
              * Message.add("yes, yes, yes"); links =
              * links.substring(0, links.indexOf(" ")); }
              */
             ObjDef_LinkId.put(id, links);
           }
         }
       }
     }
   }
 }
Example #2
0
 public static String text(Node node) {
   if (node.getNodeType() == Node.TEXT_NODE) {
     return node.getNodeValue();
   }
   if (node.hasChildNodes()) {
     return text(node.getChildNodes());
   }
   return "";
 }
 /**
  * @param list
  * @param parent
  * @exception NumberFormatException
  * @exception DicomException
  */
 void addAttributesFromNodeToList(AttributeList list, Node parent)
     throws NumberFormatException, DicomException {
   if (parent != null) {
     Node node = parent.getFirstChild();
     while (node != null) {
       String elementName = node.getNodeName();
       NamedNodeMap attributes = node.getAttributes();
       if (attributes != null) {
         Node vrNode = attributes.getNamedItem("vr");
         Node groupNode = attributes.getNamedItem("group");
         Node elementNode = attributes.getNamedItem("element");
         if (vrNode != null && groupNode != null && elementNode != null) {
           String vrString = vrNode.getNodeValue();
           String groupString = groupNode.getNodeValue();
           String elementString = elementNode.getNodeValue();
           if (vrString != null && groupString != null && elementString != null) {
             byte[] vr = vrString.getBytes();
             int group = Integer.parseInt(groupString, 16);
             int element = Integer.parseInt(elementString, 16);
             AttributeTag tag = new AttributeTag(group, element);
             if ((group % 2 == 0 && element == 0)
                 || (group == 0x0008 && element == 0x0001)
                 || (group == 0xfffc && element == 0xfffc)) {
               // System.err.println("ignoring group length or length to end or dataset trailing
               // padding "+tag);
             } else {
               if (vrString.equals("SQ")) {
                 SequenceAttribute a = new SequenceAttribute(tag);
                 // System.err.println("Created "+a);
                 if (node.hasChildNodes()) {
                   Node childNode = node.getFirstChild();
                   while (childNode != null) {
                     String childNodeName = childNode.getNodeName();
                     // System.err.println("childNodeName = "+childNodeName);
                     if (childNodeName != null && childNodeName.equals("Item")) {
                       // should check item number, but ignore for now :(
                       // System.err.println("Adding item to sequence");
                       AttributeList itemList = new AttributeList();
                       addAttributesFromNodeToList(itemList, childNode);
                       a.addItem(itemList);
                     }
                     // else may be a #text element in between
                     childNode = childNode.getNextSibling();
                   }
                 }
                 // System.err.println("Sequence Attribute is "+a);
                 list.put(tag, a);
               } else {
                 Attribute a = AttributeFactory.newAttribute(tag, vr);
                 // System.err.println("Created "+a);
                 if (node.hasChildNodes()) {
                   Node childNode = node.getFirstChild();
                   while (childNode != null) {
                     String childNodeName = childNode.getNodeName();
                     // System.err.println("childNodeName = "+childNodeName);
                     if (childNodeName != null && childNodeName.equals("value")) {
                       // should check value number, but ignore for now :(
                       String value = childNode.getTextContent();
                       // System.err.println("Value value = "+value);
                       if (value != null) {
                         value =
                             StringUtilities.removeLeadingOrTrailingWhitespaceOrISOControl(
                                 value); // just in case
                         a.addValue(value);
                       }
                     }
                     // else may be a #text element in between
                     childNode = childNode.getNextSibling();
                   }
                 }
                 // System.err.println("Attribute is "+a);
                 list.put(tag, a);
               }
             }
           }
         }
       }
       node = node.getNextSibling();
     }
   }
 }
Example #4
0
  private static void parseNet(
      Node node,
      EPC net,
      HashMap ObjDef_Name,
      HashMap ObjDef_LinkId,
      HashMap function_LinkId,
      String ModelName)
      throws Exception {
    HashMap mapping = new HashMap();

    // read all nodes
    NodeList nodes = node.getChildNodes();
    net.setIdentifier(ModelName);
    // Message.add("here I am still happy");
    for (int i = 0; i < nodes.getLength(); i++) {
      Node n = nodes.item(i);
      if (!n.getNodeName().equals("ObjOcc")) {
        continue;
      }
      if (n.getAttributes().getNamedItem("SymbolNum") == null) {
        continue;
      }
      String symbolnum = n.getAttributes().getNamedItem("SymbolNum").getNodeValue();
      if (!(symbolnum.equals("ST_FUNC")
          || symbolnum.equals("ST_EV")
          || symbolnum.equals("ST_OPR_AND_1")
          || symbolnum.equals("ST_OPR_OR_1")
          || symbolnum.equals("ST_OPR_XOR_1"))) {
        continue;
      }

      String ObjDef = n.getAttributes().getNamedItem("ObjDef.IdRef").getNodeValue();
      String ownName = (String) ObjDef_Name.get(ObjDef);
      // Message.add("YES " +
      // n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue());
      String id = n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue();
      // Message.add(id + " " + ownName);
      if (ownName == null || ownName == "") {
        ownName = id.substring(7, 11);
      }
      if (symbolnum.equals("ST_FUNC")) {
        if (ObjDef_LinkId.containsKey(ObjDef)) {
          EPCSubstFunction sf =
              (EPCSubstFunction)
                  net.addFunction(
                      new EPCSubstFunction(new LogEvent(ownName, "unknown:normal"), net, null));
          sf.setIdentifier(ownName);
          mapping.put(id, sf);
          function_LinkId.put(sf, ObjDef_LinkId.get(ObjDef));
        } else {
          EPCFunction f =
              net.addFunction(new EPCFunction(new LogEvent(ownName, "unknown:normal"), net));
          f.setIdentifier(ownName);
          mapping.put(id, f);
        }
      } else if (symbolnum.equals("ST_EV")) {
        EPCEvent e = net.addEvent(new EPCEvent(ownName, net));
        e.setIdentifier(ownName);
        mapping.put(id, e);
      } else if (symbolnum.equals("ST_OPR_AND_1")) {
        EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.AND, net));
        mapping.put(id, c);
      } else if (symbolnum.equals("ST_OPR_OR_1")) {
        // EPCConnector c = net.addConnector(new
        // EPCConnector(EPCConnector.OR, net));
        EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.AND, net));
        mapping.put(id, c);
      } else if (symbolnum.equals("ST_OPR_XOR_1")) {
        EPCConnector c = net.addConnector(new EPCConnector(EPCConnector.XOR, net));
        mapping.put(id, c);
      }
    }

    for (int i = 0; i < nodes.getLength(); i++) {
      Node n = nodes.item(i);
      if (!n.getNodeName().equals("ObjOcc")) {
        continue;
      }
      if (n.getAttributes().getNamedItem("SymbolNum") == null) {
        continue;
      }
      String symbolnum = n.getAttributes().getNamedItem("SymbolNum").getNodeValue();
      if (!(symbolnum.equals("ST_FUNC")
          || symbolnum.equals("ST_EV")
          || symbolnum.equals("ST_OPR_AND_1")
          || symbolnum.equals("ST_OPR_OR_1")
          || symbolnum.equals("ST_OPR_XOR_1"))) {
        continue;
      }
      String source = n.getAttributes().getNamedItem("ObjOcc.ID").getNodeValue();
      if (n.hasChildNodes()) {
        for (int j = 0; j < n.getChildNodes().getLength(); j++) {
          if (n.getChildNodes().item(j).getNodeName().equals("CxnOcc")) {
            Node CxnOcc = n.getChildNodes().item(j);
            String dest = CxnOcc.getAttributes().getNamedItem("ToObjOcc.IdRef").getNodeValue();
            if (mapping.get(dest) == null) {
              continue;
            }
            if (net.addEdge((EPCObject) mapping.get(source), (EPCObject) mapping.get(dest))
                == null) {
              throw (new Exception(
                  "<html>Structural properties of EPCs are violated in input file.<br>"
                      + "The following edge could not be added:<br><br>"
                      + mapping.get(source).toString()
                      + " ==> "
                      + mapping.get(dest).toString()
                      + "<br><br>Import aborted.</html>"));
            }
          }
        }
      }
    }
  }
Example #5
0
 public static EPCResult traverseAML(
     EPCResult partialResult,
     Node currentNode,
     Object parent,
     HashMap ObjDef_Name,
     HashMap ObjDef_LinkId,
     HashMap modelid_net,
     HashMap function_LinkId)
     throws Exception {
   if (currentNode.hasChildNodes()) {
     for (int i = 0; i < currentNode.getChildNodes().getLength(); i++) {
       Node currentChild = currentNode.getChildNodes().item(i);
       if (currentChild.getNodeName().equals("Group")) {
         String id = currentChild.getAttributes().getNamedItem("Group.ID").getNodeValue();
         String GroupName = "";
         if (currentChild.hasChildNodes()) {
           NodeList currentChildren = currentChild.getChildNodes();
           for (int j = 0; j < currentChildren.getLength(); j++) {
             Node Child = currentChildren.item(j);
             if (!(Child.getNodeName().equals("AttrDef"))) {
               continue;
             }
             if (Child.getAttributes()
                 .getNamedItem("AttrDef.Type")
                 .getNodeValue()
                 .equals("AT_NAME")) {
               if (Child.hasChildNodes()) {
                 for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
                   if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
                     continue;
                   } else {
                     GroupName = getTextContent(Child.getChildNodes().item(l));
                   }
                 }
                 break;
               }
             }
           }
           if (GroupName.equals("")) {
             GroupName = id;
           }
         }
         ModelHierarchyDirectory dir = new ModelHierarchyDirectory(id, GroupName);
         partialResult.addInHierarchy(dir, parent, GroupName);
         partialResult =
             traverseAML(
                 partialResult,
                 currentChild,
                 dir,
                 ObjDef_Name,
                 ObjDef_LinkId,
                 modelid_net,
                 function_LinkId);
       }
       if (currentChild.getNodeName().equals("Model")
           && currentChild
               .getAttributes()
               .getNamedItem("Model.Type")
               .getNodeValue()
               .equals("MT_EEPC")) {
         String ModelName = "gaga";
         if (currentChild.hasChildNodes()) {
           NodeList currentChildren = currentChild.getChildNodes();
           for (int j = 0; j < currentChildren.getLength(); j++) {
             Node Child = currentChildren.item(j);
             if (!(Child.getNodeName().equals("AttrDef"))) {
               continue;
             }
             if (Child.getAttributes()
                 .getNamedItem("AttrDef.Type")
                 .getNodeValue()
                 .equals("AT_NAME")) {
               if (Child.hasChildNodes()) {
                 for (int l = 0; l < Child.getChildNodes().getLength(); l++) {
                   if (!(Child.getChildNodes().item(l).getNodeName().equals("AttrValue"))) {
                     continue;
                   } else {
                     ModelName = getTextContent(Child.getChildNodes().item(l));
                   }
                 }
               }
               break;
             }
           }
         }
         try {
           ModelName = ModelName.replaceAll("\n", " ");
           EPC net = read(currentChild, ObjDef_Name, ObjDef_LinkId, function_LinkId, ModelName);
           partialResult.addInHierarchy(net, parent, ModelName);
           modelid_net.put(
               currentChild.getAttributes().getNamedItem("Model.ID").getNodeValue(), net);
         } catch (Throwable x) {
           Message.add(x.getClass().getName());
           // throw new IOException(x.getMessage());
         }
       }
     }
   }
   return partialResult;
 }