private static void findIndividualPerSequenceCoverage(
     Calibrator calibrator,
     Map<String, Integer> sequenceLengths,
     Map<String, String> readGroupToSampleId,
     final Map<String, HashMap<String, CalibrationStats>> local,
     RegionRestriction restriction) {
   final Covariate rgCovariate =
       calibrator.getCovariate(calibrator.getCovariateIndex(CovariateEnum.READGROUP));
   final Covariate seqCovariate =
       calibrator.getCovariate(calibrator.getCovariateIndex(CovariateEnum.SEQUENCE));
   for (final Map.Entry<String, Integer> entry : sequenceLengths.entrySet()) {
     final String sequenceName = entry.getKey();
     if (restriction != null && !sequenceName.equals(restriction.getSequenceName())) {
       continue;
     }
     for (final Map.Entry<String, String> e2 : readGroupToSampleId.entrySet()) {
       final String readGroup = e2.getKey();
       final String sampleName = e2.getValue();
       final int rgValue = rgCovariate.valueOf(readGroup);
       final int seqValue = seqCovariate.valueOf(sequenceName);
       if (rgValue == -1 || seqValue == -1) {
         add(local, sampleName, sequenceName, new CalibrationStats(null));
       } else {
         final Calibrator.QuerySpec spec = calibrator.initQuery();
         spec.setValue(CovariateEnum.READGROUP, rgValue);
         spec.setValue(CovariateEnum.SEQUENCE, seqValue);
         calibrator.processStats(new LocalStatsProcessor(local, sampleName, sequenceName), spec);
       }
     }
   }
 }
 /**
  * The assumption is that this method will be invoked only by cache.putAll and cache.removeAll
  * methods.
  */
 @Override
 public Map<K, ValueHolder<V>> bulkCompute(
     final Set<? extends K> keys,
     final Function<
             Iterable<? extends Map.Entry<? extends K, ? extends V>>,
             Iterable<? extends Map.Entry<? extends K, ? extends V>>>
         remappingFunction)
     throws StoreAccessException {
   Map<K, ValueHolder<V>> valueHolderMap = new HashMap<K, ValueHolder<V>>();
   if (remappingFunction instanceof Ehcache.PutAllFunction) {
     Ehcache.PutAllFunction<K, V> putAllFunction = (Ehcache.PutAllFunction) remappingFunction;
     Map<K, V> entriesToRemap = putAllFunction.getEntriesToRemap();
     for (Map.Entry<K, V> entry : entriesToRemap.entrySet()) {
       PutStatus putStatus = silentPut(entry.getKey(), entry.getValue());
       if (putStatus == PutStatus.PUT || putStatus == PutStatus.UPDATE) {
         putAllFunction.getActualPutCount().incrementAndGet();
         valueHolderMap.put(entry.getKey(), new ClusteredValueHolder<V>(entry.getValue()));
       }
     }
   } else if (remappingFunction instanceof Ehcache.RemoveAllFunction) {
     Ehcache.RemoveAllFunction<K, V> removeAllFunction =
         (Ehcache.RemoveAllFunction) remappingFunction;
     for (K key : keys) {
       boolean removed = silentRemove(key);
       if (removed) {
         removeAllFunction.getActualRemoveCount().incrementAndGet();
       }
     }
   } else {
     throw new UnsupportedOperationException(
         "This compute method is not yet capable of handling generic computation functions");
   }
   return valueHolderMap;
 }
Example #3
0
  public void do_alarms() {

    // every entry may be re-added immediately after its method execution, so it's safe
    // to iterate over a copy of the hashmap
    HashMap<String, Integer> local_alarm = new HashMap<>(alarm);

    // iterate through the hashmap
    for (Map.Entry a : local_alarm.entrySet()) {
      if ((int) a.getValue() <= 0) {

        // remove the executed alarm
        alarm.remove(a.getKey().toString());

        // execute alarm method
        Method method;
        //noinspection TryWithIdenticalCatches
        try {
          method = this.getClass().getMethod("alarm_" + a.getKey());
          method.invoke(this);
        } catch (NoSuchMethodException e) {
          e.printStackTrace();
        } catch (IllegalAccessException e) {
          e.printStackTrace();
        } catch (InvocationTargetException e) {
          e.printStackTrace();
        }

      } else

        // decrease the alarm timer
        alarm.put(a.getKey().toString(), (int) a.getValue() - 1);
    }
  }
  private void compareValueType(
      CompareContext context, String id, ModelNode current, ModelNode legacy) {
    ModelNode currentValueType = current.get(VALUE_TYPE);
    ModelNode legacyValueType = legacy.get(VALUE_TYPE);
    if (!currentValueType.isDefined() && !legacyValueType.isDefined()) {
      return;
    }
    if (isType(legacyValueType) || isType(currentValueType)) {
      if (!currentValueType.equals(legacyValueType)) {
        context.println(
            "Different 'value-type' for "
                + id
                + ". Current: "
                + current.get(VALUE_TYPE)
                + "; legacy: "
                + legacy.get(VALUE_TYPE));
      }
    } else {
      Map<String, ModelNode> legacyValueTypes = createMapIndexedByKey(legacyValueType);
      Map<String, ModelNode> currentValueTypes = createMapIndexedByKey(currentValueType);

      compareKeySetsAndRemoveMissing(
          context, "value-type for " + id, currentValueTypes, legacyValueTypes);
      for (Map.Entry<String, ModelNode> entry : currentValueTypes.entrySet()) {
        ModelNode currentEntry = entry.getValue();
        ModelNode legacyEntry = legacyValueTypes.get(entry.getKey());
        compareAttributeOrOperationParameter(
            context,
            "value-type key '" + entry.getKey() + "' for " + id,
            currentEntry,
            legacyEntry);
      }
    }
  }
Example #5
0
  public void laplace() {
    double alpha = 0.5;

    //
    HashMap<Vertex, Vector3> centerList = new HashMap();
    for (Vertex v : vertexList) {
      ArrayList<Vertex> neighboursVertexes;
      Vector3 sum = new Vector3(0, 0, 0);

      neighboursVertexes = GetNeighboursVertexes(v);
      for (Vertex neighbour : neighboursVertexes) {
        sum = sum.add(neighbour.getPosition());
      }
      sum = sum.devideValueByVector(1);
      centerList.put(v, sum);
    }
    for (Map.Entry<Vertex, Vector3> entry : centerList.entrySet()) {
      Vector3 ap = entry.getKey().getPosition().multiply(alpha);
      Vector3 ac = entry.getValue().multiply(1 - alpha);
      Vector3 newPosition = new Vector3(ap).add(ac);
      entry.setValue(newPosition);
    }
    vertexList = new ArrayList<>();
    for (Map.Entry<Vertex, Vector3> entry : centerList.entrySet()) {
      Vertex vertex = new Vertex(entry.getValue());
      vertex.setHalfEgde(entry.getKey().getHalfEdge());
      vertex.setColor(entry.getKey().getColor());
      vertexList.add(vertex);
    }
    triangulatedMesh.computeTriangleNormals();
    triangulatedMesh.computeVertexNormals();
  }
Example #6
0
  @SuppressWarnings("unchecked")
  protected Task<Object> performInvocation(
      HandlerContext ctx,
      final Invocation invocation,
      final LocalObjects.LocalObjectEntry entry,
      final LocalObjects.LocalObjectEntry target) {
    if (logger.isDebugEnabled()) {
      logger.debug("Invoking {} ", invocation);
    }
    try {
      if (target == null || target.isDeactivated()) {
        // if the entry is deactivated, forward the message back to the net.
        ctx.write(invocation);
        return Task.fromValue(null);
      }
      if (target.getObject() == null) {
        if (target instanceof ObserverEntry) {
          return Task.fromException(new ObserverNotFound());
        }
        ctx.write(invocation);
        return Task.fromValue(null);
      }
      final ObjectInvoker invoker =
          DefaultDescriptorFactory.get().getInvoker(target.getObject().getClass());

      final ActorTaskContext context = ActorTaskContext.current();
      if (invocation.getHeaders() != null
          && invocation.getHeaders().size() > 0
          && runtime.getStickyHeaders() != null) {
        for (Map.Entry e : invocation.getHeaders().entrySet()) {
          if (runtime.getStickyHeaders().contains(e.getKey())) {
            context.setProperty(String.valueOf(e.getKey()), e.getValue());
          }
        }
      }
      // todo: it would be nice to separate this last part into another handler (InvocationHandler)
      // to be able intercept the invocation right before it actually happens, good for logging and
      // metrics

      if (context != null) {
        context.setRuntime(runtime);
      } else {
        runtime.bind();
      }
      final Task result =
          invoker.safeInvoke(target.getObject(), invocation.getMethodId(), invocation.getParams());
      if (invocation.getCompletion() != null) {
        InternalUtils.linkFutures(result, invocation.getCompletion());
      }
      return result;
    } catch (Throwable exception) {
      if (logger.isDebugEnabled()) {
        logger.debug("Unknown application error. ", exception);
      }
      if (invocation.getCompletion() != null) {
        invocation.getCompletion().completeExceptionally(exception);
      }
      return Task.fromException(exception);
    }
  }
Example #7
0
  /**
   * Finds a suitable analyzer class for a magic signature
   *
   * @param signature the magic signature look up
   * @return the analyzer factory to use
   */
  private static FileAnalyzerFactory find(byte[] signature) throws IOException {
    // XXX this assumes ISO-8859-1 encoding (and should work in most cases
    // for US-ASCII, UTF-8 and other ISO-8859-* encodings, but not always),
    // we should try to be smarter than this...
    char[] chars = new char[signature.length > 8 ? 8 : signature.length];
    for (int i = 0; i < chars.length; i++) {
      chars[i] = (char) (0xFF & signature[i]);
    }

    String sig = new String(chars);

    FileAnalyzerFactory a = magics.get(sig);
    if (a == null) {
      String sigWithoutBOM = stripBOM(signature);
      for (Map.Entry<String, FileAnalyzerFactory> entry : magics.entrySet()) {
        if (sig.startsWith(entry.getKey())) {
          return entry.getValue();
        }
        // See if text files have the magic sequence if we remove the
        // byte-order marker
        if (sigWithoutBOM != null
            && entry.getValue().getGenre() == Genre.PLAIN
            && sigWithoutBOM.startsWith(entry.getKey())) {
          return entry.getValue();
        }
      }
    }
    return a;
  }
  Entry encode(final T o, final String parentDN) throws LDAPPersistException {
    // Get the attributes that should be included in the entry.
    final LinkedHashMap<String, Attribute> attrMap = new LinkedHashMap<String, Attribute>();
    attrMap.put("objectClass", objectClassAttribute);

    for (final Map.Entry<String, FieldInfo> e : fieldMap.entrySet()) {
      final FieldInfo i = e.getValue();
      if (!i.includeInAdd()) {
        continue;
      }

      final Attribute a = i.encode(o, false);
      if (a != null) {
        attrMap.put(e.getKey(), a);
      }
    }

    for (final Map.Entry<String, GetterInfo> e : getterMap.entrySet()) {
      final GetterInfo i = e.getValue();
      if (!i.includeInAdd()) {
        continue;
      }

      final Attribute a = i.encode(o);
      if (a != null) {
        attrMap.put(e.getKey(), a);
      }
    }

    final String dn = constructDN(o, parentDN, attrMap);
    final Entry entry = new Entry(dn, attrMap.values());

    if (postEncodeMethod != null) {
      try {
        postEncodeMethod.invoke(o, entry);
      } catch (Throwable t) {
        debugException(t);

        if (t instanceof InvocationTargetException) {
          t = ((InvocationTargetException) t).getTargetException();
        }

        throw new LDAPPersistException(
            ERR_OBJECT_HANDLER_ERROR_INVOKING_POST_ENCODE_METHOD.get(
                postEncodeMethod.getName(), type.getName(), getExceptionMessage(t)),
            t);
      }
    }

    setDNAndEntryFields(o, entry);

    if (superclassHandler != null) {
      final Entry e = superclassHandler.encode(o, parentDN);
      for (final Attribute a : e.getAttributes()) {
        entry.addAttribute(a);
      }
    }

    return entry;
  }
Example #9
0
 public static Map<String, UiConfigImpl> filterPropertyNamesInCriteria(
     Map<String, UiConfigImpl> uiConfigs) {
   Map<String, UiConfigImpl> propertyNamesInCriterion = new LinkedHashMap<String, UiConfigImpl>();
   for (Map.Entry<String, UiConfigImpl> entry : uiConfigs.entrySet()) {
     if (!entry.getValue().isExcludedFromCriteria()
         && !entry.getKey().endsWith("AsString")
         && !CriterionOperator.getSupportedOperators(entry.getValue().getPropertyType())
             .isEmpty()) {
       UiConfigImpl config = entry.getValue();
       Set<String> cssClasses = config.getCssClasses();
       if (cssClasses.contains("date")) {
         config.getCssClasses().clear();
         config.getCssClasses().add("date");
       } else if (cssClasses.contains("datetime")) {
         config.getCssClasses().clear();
         config.getCssClasses().add("datetime");
       } else if (cssClasses.contains("time")) {
         config.getCssClasses().clear();
         config.getCssClasses().add("time");
       } else {
         config.getCssClasses().clear();
       }
       propertyNamesInCriterion.put(entry.getKey(), config);
     }
   }
   return propertyNamesInCriterion;
 }
  @Override
  public void handleRequest(HttpServerExchange exchange) throws Exception {
    final String incomingSessionId = servletContext.getSessionConfig().findSessionId(exchange);
    if (incomingSessionId == null || !data.containsKey(incomingSessionId)) {
      next.handleRequest(exchange);
      return;
    }

    // we have some old data
    PersistentSession result = data.remove(incomingSessionId);
    if (result != null) {
      long time = System.currentTimeMillis();
      if (time < result.getExpiration().getTime()) {
        final HttpSessionImpl session = servletContext.getSession(exchange, true);
        final HttpSessionEvent event = new HttpSessionEvent(session);
        for (Map.Entry<String, Object> entry : result.getSessionData().entrySet()) {

          if (entry.getValue() instanceof HttpSessionActivationListener) {
            ((HttpSessionActivationListener) entry.getValue()).sessionDidActivate(event);
          }
          if (entry.getKey().startsWith(HttpSessionImpl.IO_UNDERTOW)) {
            session.getSession().setAttribute(entry.getKey(), entry.getValue());
          } else {
            session.setAttribute(entry.getKey(), entry.getValue());
          }
        }
      }
    }
    next.handleRequest(exchange);
  }
Example #11
0
 private static void dumpConfig(Configuration conf, StringBuilder sb) {
   Iterator<Map.Entry<String, String>> configIter = conf.iterator();
   List<Map.Entry<String, String>> configVals = new ArrayList<>();
   while (configIter.hasNext()) {
     configVals.add(configIter.next());
   }
   Collections.sort(
       configVals,
       new Comparator<Map.Entry<String, String>>() {
         @Override
         public int compare(Map.Entry<String, String> ent, Map.Entry<String, String> ent2) {
           return ent.getKey().compareTo(ent2.getKey());
         }
       });
   for (Map.Entry<String, String> entry : configVals) {
     // use get() to make sure variable substitution works
     if (entry.getKey().toLowerCase().contains("path")) {
       StringTokenizer st = new StringTokenizer(conf.get(entry.getKey()), File.pathSeparator);
       sb.append(entry.getKey()).append("=\n");
       while (st.hasMoreTokens()) {
         sb.append("    ").append(st.nextToken()).append(File.pathSeparator).append('\n');
       }
     } else {
       sb.append(entry.getKey()).append('=').append(conf.get(entry.getKey())).append('\n');
     }
   }
 }
 @Test
 public void testIteratorWithDeprecatedKeys() {
   Configuration conf = new Configuration();
   Configuration.addDeprecation("dK", new String[] {"nK"});
   conf.set("k", "v");
   conf.set("dK", "V");
   assertEquals("V", conf.get("dK"));
   assertEquals("V", conf.get("nK"));
   conf.set("nK", "VV");
   assertEquals("VV", conf.get("dK"));
   assertEquals("VV", conf.get("nK"));
   boolean kFound = false;
   boolean dKFound = false;
   boolean nKFound = false;
   for (Map.Entry<String, String> entry : conf) {
     if (entry.getKey().equals("k")) {
       assertEquals("v", entry.getValue());
       kFound = true;
     }
     if (entry.getKey().equals("dK")) {
       assertEquals("VV", entry.getValue());
       dKFound = true;
     }
     if (entry.getKey().equals("nK")) {
       assertEquals("VV", entry.getValue());
       nKFound = true;
     }
   }
   assertTrue("regular Key not found", kFound);
   assertTrue("deprecated Key not found", dKFound);
   assertTrue("new Key not found", nKFound);
 }
  @Override
  public final void runBare() throws Throwable {
    // Patch a bug with maven that does not pass properly the system property
    // with an empty value
    if ("org.hsqldb.jdbcDriver".equals(System.getProperty("gatein.test.datasource.driver"))) {
      System.setProperty("gatein.test.datasource.password", "");
    }

    //
    log.info("Running unit test:" + getName());
    for (Map.Entry<?, ?> entry : System.getProperties().entrySet()) {
      if (entry.getKey() instanceof String) {
        String key = (String) entry.getKey();
        log.debug(key + "=" + entry.getValue());
      }
    }

    //
    beforeRunBare();

    //
    try {
      super.runBare();
      log.info("Unit test " + getName() + " completed");
    } catch (Throwable throwable) {
      log.error("Unit test " + getName() + " did not complete", throwable);

      //
      throw throwable;
    } finally {
      afterRunBare();
    }
  }
Example #14
0
  @Override
  public synchronized List<T> getTopK() {
    Comparator<T> comparator =
        new Comparator<T>() {
          public int compare(T key1, T key2) {
            return Longs.compare(counts.get(key1), counts.get(key2));
          }
        };
    PriorityQueue<T> topK = new PriorityQueue<T>(k, comparator);

    for (Map.Entry<T, Long> entry : counts.entrySet()) {
      if (topK.size() < k) {
        topK.offer(entry.getKey());
      } else if (entry.getValue() > counts.get(topK.peek())) {
        topK.offer(entry.getKey());
        topK.poll();
      }
    }

    LinkedList<T> sortedTopK = new LinkedList<T>();

    while (!topK.isEmpty()) {
      sortedTopK.addFirst(topK.poll());
    }

    return sortedTopK;
  }
 @Override
 protected boolean runTest(DatabaseRegistryEntry dbre) {
   boolean result = true;
   for (Map.Entry<String, String[]> method_tags : getMandatoryTags().entrySet()) {
     Vector<String> quoted_tags = new Vector<String>();
     for (String t : method_tags.getValue()) {
       quoted_tags.add(String.format("'%s'", t));
     }
     List<String> mlsss =
         getTemplate(dbre)
             .queryForDefaultObjectList(
                 String.format(
                     QUERY,
                     StringUtils.join(quoted_tags, ","),
                     method_tags.getKey(),
                     method_tags.getValue().length),
                 String.class);
     if (mlsss.size() > 0) {
       ReportManager.problem(
           this,
           dbre.getConnection(),
           "MLSSs for "
               + method_tags.getKey()
               + " found with no statistics: "
               + StringUtils.join(mlsss, ","));
       result = false;
     } else {
       ReportManager.correct(this, dbre.getConnection(), "PASSED ");
     }
   }
   return result;
 }
  /**
   * Moves the operators from this process to another process, keeping all connections intact. TODO:
   * Test more rigorously. Do we register/unregister everything correctly?
   *
   * @return the number of ports the connections of which could not be restored
   */
  public int stealOperatorsFrom(ExecutionUnit otherUnit) {
    int failedReconnects = 0;

    // remember source and sink connections so we can reconnect them later.
    Map<String, InputPort> sourceMap = new HashMap<String, InputPort>();
    Map<String, OutputPort> sinkMap = new HashMap<String, OutputPort>();
    for (OutputPort source : otherUnit.getInnerSources().getAllPorts()) {
      if (source.isConnected()) {
        sourceMap.put(source.getName(), source.getDestination());
      }
    }
    otherUnit.getInnerSources().disconnectAll();
    for (InputPort sink : otherUnit.getInnerSinks().getAllPorts()) {
      if (sink.isConnected()) {
        sinkMap.put(sink.getName(), sink.getSource());
      }
    }
    otherUnit.getInnerSinks().disconnectAll();

    // Move operators
    Iterator<Operator> i = otherUnit.operators.iterator();
    while (i.hasNext()) {
      Operator operator = i.next();
      i.remove();
      otherUnit.unregister(operator);
      Process otherProcess = operator.getProcess();
      if (otherProcess != null) {
        operator.unregisterOperator(otherProcess);
      }
      this.operators.add(operator);
      operator.setEnclosingProcess(null);
      // operator.unregisterOperator(operator.getProcess());
      registerOperator(operator, true);
      // operator.registerOperator(this.getEnclosingOperator().getProcess());
    }

    // Rewire sources and sinks
    for (Map.Entry<String, InputPort> entry : sourceMap.entrySet()) {
      OutputPort mySource = getInnerSources().getPortByName(entry.getKey());
      if (mySource != null) {
        mySource.connectTo(entry.getValue());
      } else {
        failedReconnects++;
      }
    }
    getInnerSources().unlockPortExtenders();

    for (Map.Entry<String, OutputPort> entry : sinkMap.entrySet()) {
      InputPort mySink = getInnerSinks().getPortByName(entry.getKey());
      if (mySink != null) {
        entry.getValue().connectTo(mySink);
      } else {
        failedReconnects++;
      }
    }
    getInnerSinks().unlockPortExtenders();

    fireUpdate(this);
    return failedReconnects;
  }
  public String[] getAvailableLanguageIds() {
    Set<String> availableLanguageIds = new TreeSet<String>();

    Map<Locale, String> nameMap = getNameMap();

    for (Map.Entry<Locale, String> entry : nameMap.entrySet()) {
      Locale locale = entry.getKey();
      String value = entry.getValue();

      if (Validator.isNotNull(value)) {
        availableLanguageIds.add(LocaleUtil.toLanguageId(locale));
      }
    }

    Map<Locale, String> descriptionMap = getDescriptionMap();

    for (Map.Entry<Locale, String> entry : descriptionMap.entrySet()) {
      Locale locale = entry.getKey();
      String value = entry.getValue();

      if (Validator.isNotNull(value)) {
        availableLanguageIds.add(LocaleUtil.toLanguageId(locale));
      }
    }

    return availableLanguageIds.toArray(new String[availableLanguageIds.size()]);
  }
Example #18
0
 public void processExpressions(Map<String, String> exps, CmsRfcRelation rfc) {
   for (Map.Entry<String, String> attr : exps.entrySet()) {
     if (attr.getKey().startsWith("value")) {
       processValue(attr.getKey(), attr.getValue(), rfc.getAttributes());
     }
   }
 }
Example #19
0
  public static void printMap(Map mp) {
    Iterator it = mp.entrySet().iterator();

    String symbol = "";
    double highest = 0;
    while (it.hasNext()) {
      Map.Entry pair = (Map.Entry) it.next();
      System.out.println(pair.getKey() + " = " + pair.getValue());

      double std = std((ArrayList<String>) pair.getValue());

      if (highest < std) {
        highest = std;
        symbol = (String) pair.getKey();
      }

      /*   ArrayList arList =  (ArrayList) pair.getValue();

            for (Object object : arList) {
      	System.out.println(object.toString());
      }*/

      it.remove(); // avoids a ConcurrentModificationException
    }
    System.out.println("Symbol:" + symbol + ": High:" + highest);
  }
  private void updateVmapAvg(
      Map<String, Double> vMap,
      Map<String, AvgValue> vMapAvg,
      Map<String, Double> fxiyi,
      Map<String, Double> fxizi) {
    Set<Map.Entry<String, Double>> entrySet = fxiyi.entrySet();
    Map<String, Object> changed = new HashMap<String, Object>();
    for (Map.Entry<String, Double> entry : entrySet) {
      String key = entry.getKey();
      changed.put(key, new Object());
    }

    entrySet = fxizi.entrySet();
    for (Map.Entry<String, Double> entry : entrySet) {
      String key = entry.getKey();
      changed.put(key, new Object());
    }

    Set<Map.Entry<String, Object>> changedSet = changed.entrySet();
    for (Map.Entry<String, Object> changedSetEntry : changedSet) {
      String key = changedSetEntry.getKey();
      if (vMapAvg.containsKey(key)) {
        AvgValue avg = vMapAvg.get(key);
        Double sum = avg.getD() + vMap.get(key);
        int count = avg.getCount() + 1;
        vMapAvg.put(key, new AvgValue(sum, count));
      } else {
        vMapAvg.put(key, new AvgValue(vMap.get(key), 1));
      }
    }
  }
  @Override
  public List<Category> getCategoryByParameters(Map<String, Object> parameters) {

    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<Category> cq = cb.createQuery(Category.class);
    Root<Category> r = cq.from(Category.class);

    Join<RssUser, Category> ru = r.join("rssUserList", JoinType.LEFT);
    Join<RssUser, Rss> rss = ru.join("rss", JoinType.LEFT);

    Predicate p = cb.conjunction();

    for (Map.Entry<String, Object> param : parameters.entrySet()) {
      if (param.getKey().equals("rssId")) {
        p = cb.and(p, cb.equal(rss.get("rssId"), param.getValue()));
      } else if (param.getKey().equals("guid")) {
        p = cb.and(p, cb.equal(r.get(param.getKey()), param.getValue()));
      }
    }
    p = cb.or(p, cb.equal(r.get("categoryId"), DEFAULT_CATEGORY_ID));
    cq.distinct(true);
    cq.multiselect().where(p);
    TypedQuery typedQuery = em.createQuery(cq);
    List<Category> resultList = typedQuery.getResultList();
    return resultList;
  }
  private Map<String, Double> updateV(
      Map<String, Double> vMap, Map<String, Double> fxiyi, Map<String, Double> fxizi) {

    Set<Map.Entry<String, Double>> entrySet = fxiyi.entrySet();
    for (Map.Entry<String, Double> entry : entrySet) {
      String key = entry.getKey();
      Double value = entry.getValue();
      if (vMap.containsKey(key)) {
        vMap.put(key, vMap.get(key) + value);
      } else {
        vMap.put(key, value);
      }
    }
    entrySet = fxizi.entrySet();
    for (Map.Entry<String, Double> entry : entrySet) {
      String key = entry.getKey();
      Double value = entry.getValue();
      if (vMap.containsKey(key)) {
        vMap.put(key, vMap.get(key) - value);
      } else {
        vMap.put(key, -1 * value);
      }
    }
    return vMap;
  }
  protected Collection<KnowledgePackage> compileResources(
      Map<Resource, ResourceType> resources, boolean enablePropertySpecificFacts) {
    KnowledgeBuilderConfiguration conf = KnowledgeBuilderFactory.newKnowledgeBuilderConfiguration();

    if (enablePropertySpecificFacts) {
      conf.setOption(PropertySpecificOption.ALLOWED);
    } else {
      conf.setOption(PropertySpecificOption.DISABLED);
    }

    KnowledgeBuilder kbuilder = KnowledgeBuilderFactory.newKnowledgeBuilder(conf);
    for (Map.Entry<Resource, ResourceType> entry : resources.entrySet()) {
      kbuilder.add(entry.getKey(), entry.getValue());
      if (kbuilder.hasErrors()) {
        Logger.getLogger(Case1.class.getName())
            .log(Level.SEVERE, "Compilation Errors in {0}", entry.getKey());
        Iterator<KnowledgeBuilderError> iterator = kbuilder.getErrors().iterator();
        while (iterator.hasNext()) {
          KnowledgeBuilderError knowledgeBuilderError = iterator.next();
          Logger.getLogger(Case1.class.getName())
              .log(Level.SEVERE, knowledgeBuilderError.getMessage());
          System.out.println(knowledgeBuilderError.getMessage());
        }
        throw new IllegalStateException("Compilation Errors");
      }
    }
    return kbuilder.getKnowledgePackages();
  }
Example #24
0
 private void updateProjectCache() {
   // Ensure we have a cache at all:
   initProjectCache();
   // Loop through project path preference keys:
   for (Map.Entry<String, ?> entry : preferences.getAll().entrySet())
     if (entry.getKey().startsWith(PREF_PROJECT_PATH_PREFIX)
         && entry.getKey().endsWith(PREF_PROJECT_PATH_POSTFIX)) {
       int projectID = getProjectID(entry.getKey());
       int projectFingerPrint = getProjectFingerPrint(entry.getKey());
       if (getCachedProject(projectID, projectFingerPrint)
           == null) { // Parse the project if it is not already in the cache:
         Project p = ProjectLoader.ParseProject(entry.getValue().toString());
         if (p != null) {
           if (p.getFingerPrint() != projectFingerPrint) {
             Log.w(
                 TAG,
                 "XML finger print of project "
                     + p.toString()
                     + " has changed, possibly the "
                     + ProjectLoader.PROJECT_FILE
                     + " file (located in "
                     + entry.getValue().toString()
                     + ") was manually edited!");
             // Remove old pref key:
             removeProjectPathPrefKey(projectID, projectFingerPrint);
             // Add new pref key:
             storeProjectPathPrefKey(p);
           }
           // Cache the project object:
           cacheProject(p);
         }
       }
     }
 }
  private void compareSubsystemModels() {
    System.out.println("====== Comparing subsystem models ======");
    ResourceDefinition rootCurrentDefinition =
        new ResourceDefinition(trimNonSubsystem(currentResourceDefinitions), currentModelVersions);
    ResourceDefinition rootLegacyDefinition =
        new ResourceDefinition(trimNonSubsystem(legacyResourceDefinitions), legacyModelVersions);
    Map<String, ModelNode> currentSubsystems = rootCurrentDefinition.getChildren(SUBSYSTEM);
    Map<String, ModelNode> legacySubsystems = rootLegacyDefinition.getChildren(SUBSYSTEM);

    CompareContext context =
        new CompareContext(
            PathAddress.EMPTY_ADDRESS,
            PathAddress.EMPTY_ADDRESS,
            true,
            rootCurrentDefinition,
            rootLegacyDefinition);
    compareKeySetsAndRemoveMissing(context, "subsystems", currentSubsystems, legacySubsystems);

    for (Map.Entry<String, ModelNode> legacyEntry : legacySubsystems.entrySet()) {
      PathAddress subsystemAddress =
          PathAddress.pathAddress(PathElement.pathElement(SUBSYSTEM, legacyEntry.getKey()));
      ResourceDefinition currentDefinition =
          new ResourceDefinition(currentSubsystems.get(legacyEntry.getKey()), currentModelVersions);
      ResourceDefinition legacyDefinition =
          new ResourceDefinition(legacyEntry.getValue(), legacyModelVersions);
      context =
          new CompareContext(
              subsystemAddress, subsystemAddress, false, currentDefinition, legacyDefinition);
      if (!context.continuteWithCheck()) {
        continue;
      }
      compareModel(context);
    }
  }
 private static void handleMapField(
     Record record,
     Field field,
     String fieldPath,
     Map<String, Set<Descriptors.FieldDescriptor>> messageTypeToExtensionMap,
     Map<String, Object> defaultValueMap,
     Descriptors.FieldDescriptor fieldDescriptor,
     DynamicMessage.Builder builder)
     throws DataGeneratorException {
   Descriptors.Descriptor mapEntryDescriptor = fieldDescriptor.getMessageType();
   // MapEntry contains key and value fields
   Map<String, Field> sdcMapField = field.getValueAsMap();
   for (Map.Entry<String, Field> entry : sdcMapField.entrySet()) {
     builder.addRepeatedField(
         fieldDescriptor,
         DynamicMessage.newBuilder(mapEntryDescriptor)
             .setField(mapEntryDescriptor.findFieldByName(KEY), entry.getKey())
             .setField(
                 mapEntryDescriptor.findFieldByName(VALUE),
                 getValue(
                     mapEntryDescriptor.findFieldByName(VALUE),
                     entry.getValue(),
                     record,
                     fieldPath + FORWARD_SLASH + entry.getKey(),
                     messageTypeToExtensionMap,
                     defaultValueMap))
             .build());
   }
 }
Example #27
0
  static void itTest4(Map s, int size, int pos) {
    IdentityHashMap seen = new IdentityHashMap(size);
    reallyAssert(s.size() == size);
    int sum = 0;
    timer.start("Iter XEntry            ", size);
    Iterator it = s.entrySet().iterator();
    Object k = null;
    Object v = null;
    for (int i = 0; i < size - pos; ++i) {
      Map.Entry x = (Map.Entry) (it.next());
      k = x.getKey();
      v = x.getValue();
      seen.put(k, k);
      if (x != MISSING) ++sum;
    }
    reallyAssert(s.containsKey(k));
    it.remove();
    reallyAssert(!s.containsKey(k));
    while (it.hasNext()) {
      Map.Entry x = (Map.Entry) (it.next());
      Object k2 = x.getKey();
      seen.put(k2, k2);
      if (x != MISSING) ++sum;
    }

    reallyAssert(s.size() == size - 1);
    s.put(k, v);
    reallyAssert(seen.size() == size);
    timer.finish();
    reallyAssert(sum == size);
    reallyAssert(s.size() == size);
  }
 protected Map handleAttributes(Map attributes) {
   Map undo = super.handleAttributes(attributes);
   if (attributes != null) {
     if (undo == null) undo = new Hashtable();
     Iterator it = attributes.entrySet().iterator();
     while (it.hasNext()) {
       Map.Entry entry = (Map.Entry) it.next();
       Object cell = entry.getKey();
       Map properties = (Map) entry.getValue();
       if (cell instanceof JGraphBusinessObject) {
         JGraphBusinessObject bo = (JGraphBusinessObject) cell;
         Map deltaOld = new Hashtable();
         Iterator it2 = properties.entrySet().iterator();
         while (it2.hasNext()) {
           Map.Entry property = (Map.Entry) it2.next();
           Object key = property.getKey();
           Object oldValue = bo.putProperty(key, property.getValue());
           if (oldValue != null) deltaOld.put(key, oldValue);
         }
         undo.put(cell, deltaOld);
       }
     }
   }
   return undo;
 }
Example #29
0
 /**
  * Get the batch containing the given row. NOTE: the returned batch may be empty or may begin with
  * a row other than the one specified.
  *
  * @param row
  * @return
  * @throws TeiidComponentException
  *     <p>TODO: a method to get the raw batch
  */
 public TupleBatch getBatch(int row) throws TeiidComponentException {
   TupleBatch result = null;
   if (row > rowCount) {
     result = new TupleBatch(rowCount + 1, new List[] {});
   } else if (this.batchBuffer != null && row > rowCount - this.batchBuffer.size()) {
     result = new TupleBatch(rowCount - this.batchBuffer.size() + 1, batchBuffer);
     if (forwardOnly) {
       this.batchBuffer = null;
     }
   } else {
     if (this.batchBuffer != null && !this.batchBuffer.isEmpty()) {
       // this is just a sanity check to ensure we're not holding too many
       // hard references to batches.
       saveBatch(false);
     }
     Map.Entry<Integer, Long> entry = batches.floorEntry(row);
     Assertion.isNotNull(entry);
     Long batch = entry.getValue();
     List<List<?>> rows = manager.getBatch(batch, !forwardOnly);
     result = new TupleBatch(entry.getKey(), rows);
     if (isFinal && result.getEndRow() == rowCount) {
       result.setTerminationFlag(true);
     }
     if (forwardOnly) {
       batches.remove(entry.getKey());
     }
   }
   if (isFinal && result.getEndRow() == rowCount) {
     result.setTerminationFlag(true);
   }
   return result;
 }
  /**
   * Return JPQL string statment reference to the SampleParameter
   *
   * @return JPQL string statement
   * @throws NoParametersException
   */
  private String getSampleParameterJPQL() throws NoParametersException {
    String ret = "";
    for (Map.Entry<String, Parameter> e : datafileParameter.entrySet())
      ret += ", IN(" + Queries.DATAFILE_NAME + ".datafileParameterCollection) " + e.getKey();

    for (Map.Entry<String, Parameter> e : datasetParameter.entrySet())
      ret += ", IN(" + Queries.DATASET_NAME + ".datasetParameterCollection) " + e.getKey();

    for (Map.Entry<String, Parameter> e : sampleParameter.entrySet())
      ret += ", IN(" + Queries.PARAM_NAME_JPQL + ".sampleParameterCollection) " + e.getKey();

    if (ret.isEmpty()) throw new NoParametersException();

    String parameter = "";
    if (!datafileParameter.isEmpty())
      parameter +=
          ", IN("
              + Queries.PARAM_NAME_JPQL
              + ".investigationId.datasetCollection) "
              + Queries.DATASET_NAME
              + ", IN("
              + Queries.DATASET_NAME
              + ".datafileCollection) "
              + Queries.DATAFILE_NAME;
    if (datafileParameter.isEmpty() && !datasetParameter.isEmpty())
      parameter +=
          ", IN("
              + Queries.PARAM_NAME_JPQL
              + ".investigationId.datasetCollection) "
              + Queries.DATASET_NAME;

    if (parameter.isEmpty()) return ret.substring(2);

    return parameter.substring(2) + ret;
  }