/**
* Gets a list of the affected genes.
*
* @param selected is the list of selected genes.
* @return the list of affected genes.
*/
public ArrayList<ArrayList<Gene>> getAffected(ArrayList<Gene> selected) {
ArrayList<ArrayList<Gene>> results = new ArrayList<ArrayList<Gene>>();
for (ArrayList<Gene> x : causes) {
boolean conditions = true;
// check if the list of conditions are met.
int j = 0;
while (conditions == true && j < x.size()) {
boolean gene_found = false;
int i = 0;
Gene gene_x = x.get(j);
// check input list against condision
while (gene_found == false && i < selected.size()) {
if (gene_x.equals(selected.get(i))) {
gene_found = true;
}
i++;
}
if (gene_found == false) {
conditions = false;
}
j++;
}
if (conditions == true) {
results.add(x);
}
}
return results;
}
/**
* Checks if any of the conditions for the disease are met.
*
* @param selected is the list of selected genes.
* @return true if conditions met.
*/
public boolean isAffected(ArrayList<Gene> selected) {
for (ArrayList<Gene> x : causes) {
boolean conditions = true;
// check if the list of conditions are met.
int j = 0;
while (conditions == true && j < x.size()) { // goes through sub list
Gene gene_x = x.get(j); // gets current gene
boolean gene_found = false;
int i = 0;
// check input list against condition
while (gene_found == false && i < selected.size()) {
if (gene_x.equals(selected.get(i))) {
gene_found = true;
}
i++;
}
if (gene_found == false) {
conditions = false;
}
j++;
}
if (conditions == true) {
return true;
}
}
return false;
}