/*
* Analyse the descriptor and any <repository>s that might be part of it
*/
private void analyze(Repository repository) throws Exception {
info("== Analyzing feature descriptor ==");
info(" - read %s", file.getAbsolutePath());
features.add(repository.getFeatures());
// add the repositories from the plugin configuration
if (repositories != null) {
for (String uri : repositories) {
getLog().info(String.format(" - adding repository from %s", uri));
Repository dependency = new RepositoryImpl(URI.create(translateFromMaven(uri)));
schemaCheck(dependency, URI.create(uri));
features.add(dependency.getFeatures());
validateBundlesAvailable(dependency);
analyzeExports(dependency);
}
}
for (URI uri : repository.getRepositories()) {
Artifact artifact = (Artifact) resolve(uri.toString());
Repository dependency =
new RepositoryImpl(new File(localRepo.getBasedir(), localRepo.pathOf(artifact)).toURI());
schemaCheck(dependency, uri);
getLog()
.info(
String.format(
" - adding %d known features from %s", dependency.getFeatures().length, uri));
features.add(dependency.getFeatures());
// we need to do this to get all the information ready for further processing
validateBundlesAvailable(dependency);
analyzeExports(dependency);
}
}
public void train(int maxIter) {
features.setEmpiricalWeight(sampleList.size());
for (int i = 0; i < maxIter; ++i) {
features.updateModelWeight(sampleList);
if (features.isConvergence(0.435)) {
break;
}
}
}
public void loadData(String path) throws IOException {
BufferedReader br = new BufferedReader(new FileReader(new File(path)));
String line = br.readLine();
while (line != null) {
String[] segs = line.split("\\s");
String label = segs[0];
List<String> featureList = new ArrayList<String>();
for (int i = 1; i < segs.length; ++i) {
featureList.add(segs[i]);
features.addFeature(label, segs[i]);
}
features.setMaxFeaturePerSample(featureList.size());
Sample sample = new Sample(label, featureList);
sampleList.add(sample);
labelSet.add(label);
line = br.readLine();
}
}
/*
* Validate if all imports for a feature are being matched with exports
*/
private void validateImportsExports(Feature feature) throws Exception {
Map<Clause, String> imports = new HashMap<Clause, String>();
Set<Clause> exports = new HashSet<Clause>();
for (Dependency dependency : feature.getDependencies()) {
if (featureExports.containsKey(dependency.getName())) {
exports.addAll(featureExports.get(dependency.getName()));
} else {
validateImportsExports(features.get(dependency.getName(), dependency.getVersion()));
}
}
for (String bundle : getBundleLocations(feature)) {
Manifest meta = manifests.get(bundles.get(bundle));
exports.addAll(getExports(meta));
for (Clause clause : getMandatoryImports(meta)) {
imports.put(clause, bundle);
}
}
// setting up the set of required imports
Set<Clause> requirements = new HashSet<Clause>();
requirements.addAll(imports.keySet());
// now, let's remove requirements whenever we find a matching export for them
for (Clause element : imports.keySet()) {
if (systemExports.contains(element.getName())) {
debug("%s is resolved by a system bundle export or provided bundle", element);
requirements.remove(element);
continue;
}
for (Clause export : exports) {
if (matches(element, export)) {
debug("%s is resolved by export %s", element, export);
requirements.remove(element);
continue;
}
debug("%s is not resolved by export %s", element, export);
}
}
// if there are any more requirements left here, there's a problem with the feature
if (!requirements.isEmpty()) {
warn("Failed to validate feature %s", feature.getName());
for (Clause entry : requirements) {
warn("No export found to match %s (imported by %s)", entry, imports.get(entry));
}
throw new Exception(
String.format(
"%d unresolved imports in feature %s", requirements.size(), feature.getName()));
}
info(" OK: imports resolved for %s", feature.getName());
featureExports.put(feature.getName(), exports);
}
// calculate p(y|x)=sum_i(alpha_i*f_i(x,y))/sum_y(sum_i(alpha_i*f_i(x,y))).
public Map<String, Double> predict(List<String> x) {
Map<String, Double> probMap = new HashMap<String, Double>();
double sum = 0;
for (String label : labelSet) {
double prob = 0;
for (String feature : x) {
prob += features.getModelWeight(label, feature);
}
prob = Math.exp(prob);
probMap.put(label, prob);
sum += prob;
}
for (String label : probMap.keySet()) {
probMap.put(label, probMap.get(label) / sum);
}
return probMap;
}