public static LinkedList<profile> importer() throws IOException {
LinkedList<profile> people = new LinkedList<profile>();
Scanner sFile;
profile entry;
try {
sFile =
new Scanner(new File("/Users/richarddavies/NetBeansProjects/typ_MatlabGraph/users.dat"));
sFile.nextLine();
while (sFile.hasNext()) {
String profile = sFile.nextLine();
// System.out.println(profile);
Scanner profScan = new Scanner(profile);
profScan.useDelimiter(",");
while (profScan.hasNext()) {
Long id = profScan.nextLong();
String ident = String.valueOf(id);
String rot_Id = rot13.encrypt(ident);
Long rot_IntId = Long.parseLong(rot_Id);
String fname = profScan.next();
String rot_Name = rot13.encrypt(fname);
// String sname = profScan.next();
// int age = profScan.nextInt();
String gender = profScan.next();
String nat = profScan.next();
entry = new profile(id, fname, gender, nat);
// System.out.println("id: "+id+" name: "+fname+" gender: "+gender+" nationality: "+nat);
// System.out.println("id: "+rot_IntId+" name: "+rot_Name+" gender: "+gender+"
// nationality: "+nat);
people.add(entry);
}
}
} catch (IOException ex) {
// return people;
System.out.println("(No System File profile.txt)" + ex);
}
return people;
}
// sieve
public static int[] primes(int n)
throws Exception { // for(int i=1;i<=arr.length-1;i++)out.write(""+arr[i]+" ");
boolean arr[] = new boolean[n + 1];
Arrays.fill(arr, true);
for (int i = 1; i <= Math.sqrt(n); i++) {
if (!arr[i]) continue;
for (int j = 2 * i; j <= n; j += i) {
arr[i] = false;
}
}
LinkedList<Integer> ll = new LinkedList<Integer>();
for (int i = 1; i <= n; i++) {
if (arr[i]) ll.add(i);
}
n = ll.size();
int primes[] = new int[n + 1];
for (int i = 1; i <= n; i++) {
primes[i] = ll.removeFirst();
}
return primes;
}
/**
* Construct a {@link SubProcessHeavy SubProcessHeavy} instance which when executed will fulfill
* the given action agenda.
*
* <p>
*
* @param agenda The agenda to be accomplished by the action.
* @param outFile The file to which all STDOUT output is redirected.
* @param errFile The file to which all STDERR output is redirected.
* @return The SubProcess which will fulfill the agenda.
* @throws PipelineException If unable to prepare a SubProcess due to illegal, missing or
* imcompatable information in the action agenda or a general failure of the prep method code.
*/
public SubProcessHeavy prep(ActionAgenda agenda, File outFile, File errFile)
throws PipelineException {
NodeID nodeID = agenda.getNodeID();
/* sanity checks */
Path loadScene = null;
Path saveScene = null;
boolean isAscii = false;
TreeMap<Integer, LinkedList<Path>> mel = new TreeMap<Integer, LinkedList<Path>>();
{
/* generate the filename of the Maya scene to load */
{
String sname = (String) getSingleParamValue("MayaScene");
if (sname != null) {
FileSeq fseq = agenda.getPrimarySource(sname);
if (fseq == null)
throw new PipelineException(
"Somehow the Maya Scene node ("
+ sname
+ ") was not one of the source "
+ "nodes!");
String suffix = fseq.getFilePattern().getSuffix();
if (!fseq.isSingle() || (suffix == null) || !(suffix.equals("ma") || suffix.equals("mb")))
throw new PipelineException(
"The MayaMEL Action requires that the source node specified by the Maya "
+ "Scene parameter ("
+ sname
+ ") must have a single Maya scene file as "
+ "its primary file sequence!");
NodeID snodeID = new NodeID(nodeID, sname);
loadScene =
new Path(PackageInfo.sProdPath, snodeID.getWorkingParent() + "/" + fseq.getPath(0));
}
}
/* generate the name of the Maya scene to save */
{
Boolean save = (Boolean) getSingleParamValue("SaveResult");
if ((save != null) && save) {
FileSeq fseq = agenda.getPrimaryTarget();
String suffix = fseq.getFilePattern().getSuffix();
if (!fseq.isSingle() || (suffix == null) || !(suffix.equals("ma") || suffix.equals("mb")))
throw new PipelineException(
"The MayaMEL Action requires that the primary target file sequence must "
+ "be a single Maya scene file if the Save Result parameter is set!");
isAscii = suffix.equals("ma");
saveScene =
new Path(PackageInfo.sProdPath, nodeID.getWorkingParent() + "/" + fseq.getPath(0));
}
}
/* generate the table of MEL script files to evaluate */
for (String sname : getSourceNames()) {
Integer order = (Integer) getSourceParamValue(sname, "Order");
FileSeq fseq = agenda.getPrimarySource(sname);
if (fseq == null)
throw new PipelineException(
"Somehow an per-source Order parameter exists for a node ("
+ sname
+ ") "
+ "which was not one of the source nodes!");
String suffix = fseq.getFilePattern().getSuffix();
if (!fseq.isSingle() || (suffix == null) || !suffix.equals("mel"))
throw new PipelineException(
"The MayaMEL Action requires that the source node ("
+ sname
+ ") with "
+ "per-source Order parameter must have a single MEL script file as its "
+ "primary file sequence!");
NodeID snodeID = new NodeID(nodeID, sname);
Path script =
new Path(PackageInfo.sProdPath, snodeID.getWorkingParent() + "/" + fseq.getPath(0));
LinkedList<Path> scripts = mel.get(order);
if (scripts == null) {
scripts = new LinkedList<Path>();
mel.put(order, scripts);
}
scripts.add(script);
}
}
/* create a temporary MEL script file */
File script = createTemp(agenda, 0755, "mel");
try {
FileWriter out = new FileWriter(script);
/* a workaround needed in "maya -batch" mode */
out.write("// WORK AROUNDS:\n" + "lightlink -q;\n\n");
/* rename the current scene as the output scene */
if (saveScene != null) {
out.write(
"// SCENE SETUP\n"
+ "file -rename \""
+ saveScene
+ "\";\n"
+ "file -type \""
+ (isAscii ? "mayaAscii" : "mayaBinary")
+ "\";\n\n");
}
/* evaluate the MEL scripts */
if (!mel.isEmpty()) {
out.write("// MEL SCRIPTS \n");
for (LinkedList<Path> scripts : mel.values()) {
for (Path spath : scripts) out.write("source \"" + spath + "\";\n");
}
out.write("\n");
}
/* save the file */
if (saveScene != null) out.write("// SAVE\n" + "file -save;\n");
out.close();
} catch (IOException ex) {
throw new PipelineException(
"Unable to write temporary MEL script file ("
+ script
+ ") for Job "
+ "("
+ agenda.getJobID()
+ ")!\n"
+ ex.getMessage());
}
/* create the process to run the action */
try {
ArrayList<String> args = new ArrayList<String>();
args.add("-batch");
args.add("-script");
args.add(script.getPath());
if (loadScene != null) {
args.add("-file");
args.add(loadScene.toOsString());
}
String program = "maya";
if (PackageInfo.sOsType == OsType.Windows) program = (program + ".exe");
return new SubProcessHeavy(
agenda.getNodeID().getAuthor(),
getName() + "-" + agenda.getJobID(),
program,
args,
agenda.getEnvironment(),
agenda.getWorkingDir(),
outFile,
errFile);
} catch (Exception ex) {
throw new PipelineException(
"Unable to generate the SubProcess to perform this Action!\n" + ex.getMessage());
}
}
public static void exporter(LinkedList<profile> usr, MatlabProxy proxy)
throws MatlabConnectionException, MatlabInvocationException {
String file = "/Users/richarddavies/NetBeansProjects/typ_MatlabGraph/rotCmp_2012.txt";
int i = 0;
try {
double result;
int index_a = 0;
int index_b = 0;
int item;
FileWriter fw = new FileWriter(file);
BufferedWriter bw = new BufferedWriter(fw);
PrintWriter outFile = new PrintWriter(bw);
outFile.println("nodedef>name VARCHAR,label VARCHAR,sex VARCHAR,locale VARCHAR");
for (i = 0; i < usr.size(); i++) {
outFile.println(
usr.get(i).idProf
+ ","
+ usr.get(i).firstName
+ ","
+ usr.get(i).gender
+ ","
+ usr.get(i).nat);
}
outFile.println("edgedef>node1 VARCHAR,node2 VARCHAR");
for (i = 0; i < usr.size(); i++) {
System.out.println(usr.get(i).firstName + ": ");
for (int j = 0; j < usr.size(); j++) {
index_a = i + 1;
index_b = j + 1;
// result = proxy.getVariable("adjMatrix("+index_a+","+index_b+");");
result = ((double[]) proxy.getVariable("adjMatrix(" + index_a + "," + index_b + ");"))[0];
item = (int) result;
// item = ((Integer)result).intValue();
// System.out.println(result);
if (item == 1) {
System.out.print(" (" + usr.get(j).firstName + ") ");
outFile.println(usr.get(i).idProf + "," + usr.get(j).idProf);
}
}
System.out.println(" ");
System.out.println(" ");
System.out.println(" ");
System.out.println(" ");
}
outFile.close();
} catch (IOException ex) {
System.out.println(" error : " + ex);
}
}
public static LinkedList<edge> importer(MatlabProxy proxy)
throws IOException, MatlabConnectionException, MatlabInvocationException {
Scanner sFile;
edge entry;
LinkedList<edge> tie = new LinkedList<edge>();
Long k, p;
try {
sFile =
new Scanner(new File("/Users/richarddavies/NetBeansProjects/typ_MatlabGraph/edges.dat"));
System.out.println(sFile.nextLine());
while (sFile.hasNext()) {
String edge = sFile.nextLine();
// System.out.println(edge);
Scanner edgeScan = new Scanner(edge);
edgeScan.useDelimiter(",");
while (edgeScan.hasNext()) {
k = edgeScan.nextLong();
System.out.print(k + " ");
String ident_k = String.valueOf(k);
String rot_Id_k = rot13.encrypt(ident_k);
Long rot_k = Long.parseLong(rot_Id_k);
p = edgeScan.nextLong();
System.out.print(p);
String ident_p = String.valueOf(p);
String rot_Id_p = rot13.encrypt(ident_p);
Long rot_p = Long.parseLong(rot_Id_p);
// System.out.println(rot_k+" : "+rot_p);
entry = new edge(k, p);
int n = search.search(k);
int m = search.search(p);
System.out.print(
" : "
+ Typ_MatlabGraph.people.get(n).idProf
+ " "
+ Typ_MatlabGraph.people.get(m).idProf);
System.out.println("");
n++;
m++;
proxy.eval("adjMatrix(" + n + "," + m + ") = 1");
tie.add(entry);
}
}
} catch (IOException ex) {
System.out.println("(No System File profile.txt)" + ex);
}
return tie;
}