private CIJobStatus deleteCI(CIJob job, List<String> builds) throws PhrescoException {
S_LOGGER.debug("Entering Method CIManagerImpl.deleteCI(CIJob job)");
S_LOGGER.debug("Job name " + job.getName());
cli = getCLI(job);
String deleteType = null;
List<String> argList = new ArrayList<String>();
S_LOGGER.debug("job name " + job.getName());
S_LOGGER.debug("Builds " + builds);
if (CollectionUtils.isEmpty(builds)) { // delete job
S_LOGGER.debug("Job deletion started");
S_LOGGER.debug("Command " + FrameworkConstants.CI_JOB_DELETE_COMMAND);
deleteType = DELETE_TYPE_JOB;
argList.add(FrameworkConstants.CI_JOB_DELETE_COMMAND);
argList.add(job.getName());
} else { // delete Build
S_LOGGER.debug("Build deletion started");
deleteType = DELETE_TYPE_BUILD;
argList.add(FrameworkConstants.CI_BUILD_DELETE_COMMAND);
argList.add(job.getName());
StringBuilder result = new StringBuilder();
for (String string : builds) {
result.append(string);
result.append(",");
}
String buildNos = result.substring(0, result.length() - 1);
argList.add(buildNos);
S_LOGGER.debug("Command " + FrameworkConstants.CI_BUILD_DELETE_COMMAND);
S_LOGGER.debug("Build numbers " + buildNos);
}
try {
int status = cli.execute(argList);
String message = deleteType + " deletion started in jenkins";
if (status == FrameworkConstants.JOB_STATUS_NOTOK) {
deleteType = deleteType.substring(0, 1).toLowerCase() + deleteType.substring(1);
message = "Error while deleting " + deleteType + " in jenkins";
}
S_LOGGER.debug("Delete CI Status " + status);
S_LOGGER.debug("Delete CI Message " + message);
return new CIJobStatus(status, message);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(
"Entered into catch block of CIManagerImpl.deleteCI(CIJob job) "
+ e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(
"Entered into catch block of CIManagerImpl.deleteCI(CIJob job) "
+ e.getLocalizedMessage());
}
}
}
}
}
private CIJobStatus buildJob(CIJob job) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug("Entering Method CIManagerImpl.buildJob(CIJob job)");
}
cli = getCLI(job);
List<String> argList = new ArrayList<String>();
argList.add(FrameworkConstants.CI_BUILD_JOB_COMMAND);
argList.add(job.getName());
try {
int status = cli.execute(argList);
String message = FrameworkConstants.CI_BUILD_STARTED;
if (status == FrameworkConstants.JOB_STATUS_NOTOK) {
message = FrameworkConstants.CI_BUILD_STARTING_ERROR;
}
return new CIJobStatus(status, message);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}
/**
* Implements getResource() See getRealPath(), it have to be local to the current Context - and
* can't go to a sub-context. That means we don't need any overhead.
*/
public URL getResource(String rpath) throws MalformedURLException {
if (rpath == null) return null;
if (URLUtil.hasEscape(rpath)) return null;
URL url = null;
String absPath = getAbsolutePath();
if ("".equals(rpath)) return new URL("file", null, 0, absPath);
if (!rpath.startsWith("/")) rpath = "/" + rpath;
String realPath = FileUtil.safePath(absPath, rpath);
if (realPath == null) {
log("Unsafe path " + absPath + " " + rpath);
return null;
}
try {
url = new URL("file", null, 0, realPath);
if (debug > 9) log("getResourceURL=" + url + " request=" + rpath);
return url;
} catch (IOException ex) {
ex.printStackTrace();
return null;
}
}
/**
* Write the XML representation of the API to a file.
*
* @param root the RootDoc object passed by Javadoc
* @return true if no problems encountered
*/
public static boolean writeXML(RootDoc root) {
String tempFileName = outputFileName;
if (outputDirectory != null) {
tempFileName = outputDirectory;
if (!tempFileName.endsWith(JDiff.DIR_SEP)) tempFileName += JDiff.DIR_SEP;
tempFileName += outputFileName;
}
try {
FileOutputStream fos = new FileOutputStream(tempFileName);
outputFile = new PrintWriter(fos);
System.out.println("JDiff: writing the API to file '" + tempFileName + "'...");
if (root.specifiedPackages().length != 0 || root.specifiedClasses().length != 0) {
RootDocToXML apiWriter = new RootDocToXML();
apiWriter.emitXMLHeader();
apiWriter.logOptions();
apiWriter.processPackages(root);
apiWriter.emitXMLFooter();
}
outputFile.close();
} catch (IOException e) {
System.out.println("IO Error while attempting to create " + tempFileName);
System.out.println("Error: " + e.getMessage());
System.exit(1);
}
// If validation is desired, write out the appropriate api.xsd file
// in the same directory as the XML file.
if (XMLToAPI.validateXML) {
writeXSD();
}
return true;
}
private Class<?> findClassInComponents(final String name) throws ClassNotFoundException {
final String classFilename = this.getClassFilename(name);
final Enumeration<File> e = this.pathComponents.elements();
while (e.hasMoreElements()) {
final File pathComponent = e.nextElement();
InputStream stream = null;
try {
stream = this.getResourceStream(pathComponent, classFilename);
if (stream != null) {
this.log("Loaded from " + pathComponent + " " + classFilename, 4);
return this.getClassFromStream(stream, name, pathComponent);
}
continue;
} catch (SecurityException se) {
throw se;
} catch (IOException ioe) {
this.log(
"Exception reading component " + pathComponent + " (reason: " + ioe.getMessage() + ")",
3);
} finally {
FileUtils.close(stream);
}
}
throw new ClassNotFoundException(name);
}
public void updateJob(ApplicationInfo appInfo, CIJob job) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug(
"Entering Method ProjectAdministratorImpl.updateJob(Project project, CIJob job)");
}
FileWriter writer = null;
try {
CIJobStatus jobStatus = configureJob(job, FrameworkConstants.CI_UPDATE_JOB_COMMAND);
if (jobStatus.getCode() == -1) {
throw new PhrescoException(jobStatus.getMessage());
}
if (debugEnabled) {
S_LOGGER.debug("getCustomModules() ProjectInfo = " + appInfo);
}
updateJsonJob(appInfo, job);
} catch (ClientHandlerException ex) {
if (debugEnabled) {
S_LOGGER.error(ex.getLocalizedMessage());
}
throw new PhrescoException(ex);
} finally {
if (writer != null) {
try {
writer.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}
/**
* Gets the DTD for the specified doctype file name.
*
* @param doctype the doctype file name (e.g., "osp10.dtd")
* @return the DTD as a string
*/
public static String getDTD(String doctype) {
if (dtdName != doctype) {
// set to defaults in case doctype is not found
dtdName = defaultName;
try {
String dtdPath = "/org/opensourcephysics/resources/controls/doctypes/"; // $NON-NLS-1$
java.net.URL url = XML.class.getResource(dtdPath + doctype);
if (url == null) {
return dtd;
}
Object content = url.getContent();
if (content instanceof InputStream) {
BufferedReader reader = new BufferedReader(new InputStreamReader((InputStream) content));
StringBuffer buffer = new StringBuffer(0);
String line;
while ((line = reader.readLine()) != null) {
buffer.append(line + NEW_LINE);
}
dtd = buffer.toString();
dtdName = doctype;
}
} catch (IOException ex) {
ex.printStackTrace();
}
}
return dtd;
}
public static void showDesktop() { // Windows only
try {
if (SystemUtils.isWinPlatform())
RUNTIME.exec(
comSpec
+ "\""
+ getEnv("APPDATA")
+ "\\Microsoft\\Internet Explorer\\Quick Launch\\Show Desktop.scf\"");
} catch (IOException e) {
e.printStackTrace();
}
}
public Class<?> findClass(String s) {
try {
byte[] bytes = loadClassData(s);
return defineClass(s, bytes, 0, bytes.length);
} catch (IOException ioe) {
try {
return super.loadClass(s);
} catch (ClassNotFoundException ignore) {
}
ioe.printStackTrace(System.out);
return null;
}
}
/**
* Returns the next non-comment, non-whitespace line of the input buffer.
*
* @param input the input buffer
* @return the next non-comment, non-whitespace line of the input buffer or null if the end of the
* buffer is reached before such a line can be found
*/
static /*@Nullable*/ String getNextRealLine(BufferedReader input) {
String currentLine = "";
try {
while (currentLine != null) {
currentLine = input.readLine();
if (currentLine != null && !isComment(currentLine) && !isWhitespace(currentLine))
return currentLine;
}
} catch (IOException e) {
throw new RuntimeException(e.toString());
}
return null;
}
// Writes the program to a source file, compiles it, and runs it.
private void compileAndRun(String fileName, String code) {
// Exceptions here can pick and choose what font to use, as needed.
// Exceptions thrown by the program, that cause the Playground to be unstable, should be in
// blue.
println("Deleting old temp files...", progErr);
new File(fileName + ".java").delete();
new File(fileName + ".class").delete();
println("Creating source file...", progErr);
file = new File(fileName + ".java");
println("Writing code to source file...", progErr);
try {
new FileWriter(file).append(code).close();
} catch (IOException i) {
println("Had an IO Exception when trying to write the code. Stack trace:", error);
i.printStackTrace();
return; // Exit on error
}
println("Compiling code...", progErr);
// This should only ever be called if the JDK isn't installed. How you'd get here, I don't
// know.
if (compiler == null) {
println("Fatal Error: JDK not installed. Go to java.sun.com and install.", error);
return;
}
// Tries to compile. Success code is 0, so if something goes wrong, do stuff.
int result =
compiler.run(
null,
null,
null,
file
.getAbsolutePath()); // Possibly add a new outputstream to parse through the
// compiler errors
if (result != 0) {
displayLog();
println("Failed to compile.", error);
return; // Return on error
}
println("Code compiled with 0 errors.", progErr);
println("Attempting to run code...", progErr);
run(fileName);
}
/** Execute the system command 'cmd' and fill an ArrayList with the results. */
public static ArrayList<String> executeSystemCommand(String cmd) {
if (debug) System.out.println("cmd: " + cmd);
ArrayList<String> list = new ArrayList<>();
try (BufferedReader br =
new BufferedReader(
new InputStreamReader(RUNTIME.exec(/*comSpec +*/ cmd).getInputStream()))) {
for (String line = null; (line = br.readLine()) != null; ) {
if (debug) System.out.println(line);
list.add(line);
}
} catch (IOException e) {
e.printStackTrace();
}
return list;
}
public static String ping(String address) {
String reply = "Request timed out";
try (BufferedReader br =
new BufferedReader(
new InputStreamReader(RUNTIME.exec("ping " + address).getInputStream()))) {
for (String line = null; (line = br.readLine()) != null; ) {
if (line.trim().startsWith("Reply ")) {
reply = line;
break;
}
}
} catch (IOException e) {
e.printStackTrace();
}
return reply;
}
public static void main(String[] argarray) {
CoefArgs args = CoefArgs.parse(argarray);
try {
AllMultilevelCoefs coefs = new AllMultilevelCoefs(args);
Matrix matrix = coefs.matrix(true);
Matrix covar = matrix.transpose().times(matrix);
SingularValueDecomposition svd = covar.svd();
Matrix U = svd.getU();
double[] d1 = normalize(column(U, 1));
double[] d2 = normalize(column(U, 2));
String[] genes = coefs.genes();
DataFrame<MultilevelCoefs.XYPoint> points =
new DataFrame<MultilevelCoefs.XYPoint>(MultilevelCoefs.XYPoint.class);
for (int i = 0; i < genes.length; i++) {
double[] gr = row(matrix, i);
double x = inner(gr, d1), y = inner(gr, d2);
MultilevelCoefs.XYPoint point = new MultilevelCoefs.XYPoint(x, y, genes[i]);
points.addObject(point);
System.out.println(point.toString());
}
System.out.println("U: ");
println(U, System.out);
ModelScatter scatter = new ModelScatter();
scatter.addModels(points.iterator());
scatter.setProperty(ModelScatter.colorKey, Coloring.clearer(Color.red));
coefs.save(
new File(
String.format(
"C:\\Documents and Settings\\tdanford\\Desktop\\sigma_%s.txt", args.compare)));
new ModelScatter.InteractiveFrame(scatter, "PCA");
} catch (IOException e) {
e.printStackTrace();
}
}
/** Disconnect all clients and stop the server: internal use only. */
public void dispose() {
thread = null;
if (clients != null) {
disconnectAll();
clientCount = 0;
clients = null;
}
try {
if (server != null) {
server.close();
server = null;
}
} catch (IOException e) {
e.printStackTrace();
}
}
private CIJob getJob(ApplicationInfo appInfo) throws PhrescoException {
Gson gson = new Gson();
try {
BufferedReader br = new BufferedReader(new FileReader(getCIJobPath(appInfo)));
CIJob job = gson.fromJson(br, CIJob.class);
br.close();
return job;
} catch (FileNotFoundException e) {
S_LOGGER.debug(e.getLocalizedMessage());
return null;
} catch (com.google.gson.JsonParseException e) {
S_LOGGER.debug("it is already adpted project !!!!! " + e.getLocalizedMessage());
return null;
} catch (IOException e) {
S_LOGGER.debug(e.getLocalizedMessage());
return null;
}
}
public static Properties getEnvironmentVariables() {
synchronized (cygstartPath) {
if (envVars != null) return envVars;
envVars = new Properties();
try (BufferedReader br =
new BufferedReader(
new InputStreamReader(RUNTIME.exec(comSpec + "env").getInputStream()))) {
for (String line = null; (line = br.readLine()) != null; ) {
// if (debug) System.out.println("getEnvironmentVariables(): line=" + line);
int idx = line.indexOf('=');
if (idx > 0) envVars.put(line.substring(0, idx), line.substring(idx + 1));
}
} catch (IOException e) {
e.printStackTrace();
}
return envVars;
}
}
public void run() {
while (Thread.currentThread() == thread) {
try {
Socket socket = server.accept();
Client client = new Client(parent, socket);
if (clientValidationMethod != null) {
try {
clientValidationMethod.invoke(parent, new Object[] {this, client});
} catch (Exception e) {
// System.err.println("Disabling serverEvent() for port " + port);
e.printStackTrace();
}
}
if (client.active()) {
synchronized (clients) {
addClient(client);
if (serverEventMethod != null) {
try {
serverEventMethod.invoke(parent, new Object[] {this, client});
} catch (Exception e) {
// System.err.println("Disabling serverEvent() for port " + port);
e.printStackTrace();
}
}
}
}
} catch (SocketException e) {
// thrown when server.close() is called and server is waiting on accept
System.err.println("Server SocketException: " + e.getMessage());
thread = null;
} catch (IOException e) {
// errorMessage("run", e);
e.printStackTrace();
thread = null;
}
try {
Thread.sleep(8);
} catch (InterruptedException ex) {
}
}
}
public DumpResource(String resource_name, String locale_name) {
// Split locale_name into language_country_variant.
String language;
String country;
String variant;
language = locale_name;
{
int i = language.indexOf('_');
if (i >= 0) {
country = language.substring(i + 1);
language = language.substring(0, i);
} else country = "";
}
{
int j = country.indexOf('_');
if (j >= 0) {
variant = country.substring(j + 1);
country = country.substring(0, j);
} else variant = "";
}
Locale locale = new Locale(language, country, variant);
// Get the resource.
ResourceBundle catalog = ResourceBundle.getBundle(resource_name, locale);
// We are only interested in the messsages belonging to the locale
// itself, not in the inherited messages. But catalog.getLocale() exists
// only in Java2 and sometimes differs from the given locale.
try {
Writer w1 = new OutputStreamWriter(System.out, "UTF8");
Writer w2 = new BufferedWriter(w1);
this.out = w2;
this.catalog = catalog;
dump();
w2.close();
w1.close();
System.out.flush();
} catch (IOException e) {
e.printStackTrace();
System.exit(1);
}
}
protected void getDimensionsFromLogFile(BufferedReader reader, PicText text) {
if (reader == null) {
return;
}
String line = ""; // il rale si j'initialise pas ...
boolean finished = false;
while (!finished) {
try {
line = reader.readLine();
} catch (IOException ioex) {
ioex.printStackTrace();
return;
}
if (line == null) {
System.out.println("Size of text not found in log file...");
return;
}
System.out.println(line);
Matcher matcher = LogFilePattern.matcher(line);
if (line != null && matcher.find()) {
System.out.println("FOUND :" + line);
finished = true;
try {
text.setDimensions(
0.3515 * Double.parseDouble(matcher.group(1)), // height, pt->mm (1pt=0.3515 mm)
0.3515 * Double.parseDouble(matcher.group(2)), // width
0.3515 * Double.parseDouble(matcher.group(3))); // depth
areDimensionsComputed = true;
} catch (NumberFormatException e) {
System.out.println("Logfile number format problem: $line" + e.getMessage());
} catch (IndexOutOfBoundsException e) {
System.out.println("Logfile regexp problem: $line" + e.getMessage());
}
}
}
return;
}
// Creates a new thread, runs the program in that thread, and reports any errors as needed.
private void run(String clazz) {
try {
// Makes sure the JVM resets if it's already running.
if (JVMrunning) kill();
// Some String constants for java path and OS-specific separators.
String separator = System.getProperty("file.separator");
String path = System.getProperty("java.home") + separator + "bin" + separator + "java";
// Tries to run compiled code.
ProcessBuilder builder = new ProcessBuilder(path, clazz);
// Should be good now! Everything past this is on you. Don't mess it up.
println(
"Build succeeded on " + java.util.Calendar.getInstance().getTime().toString(), progErr);
println("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~", progErr);
JVM = builder.start();
// Note that as of right now, there is no support for input. Only output.
Reader errorReader = new InputStreamReader(JVM.getErrorStream());
Reader outReader = new InputStreamReader(JVM.getInputStream());
// Writer inReader = new OutputStreamWriter(JVM.getOutputStream());
redirectErr = redirectIOStream(errorReader, err);
redirectOut = redirectIOStream(outReader, out);
// redirectIn = redirectIOStream(null, inReader);
} catch (IOException e) {
// JVM = builder.start() can throw this.
println("IOException when running the JVM.", progErr);
e.printStackTrace();
displayLog();
return;
}
}
private static void initialize() {
props = new Properties();
boolean loadedProps = false;
boolean overrideAll = false;
// first load the system properties file
// to determine the value of security.overridePropertiesFile
File propFile = securityPropFile("java.security");
if (propFile.exists()) {
try {
FileInputStream fis = new FileInputStream(propFile);
InputStream is = new BufferedInputStream(fis);
props.load(is);
is.close();
loadedProps = true;
if (sdebug != null) {
sdebug.println("reading security properties file: " + propFile);
}
} catch (IOException e) {
if (sdebug != null) {
sdebug.println("unable to load security properties from " + propFile);
e.printStackTrace();
}
}
}
if ("true".equalsIgnoreCase(props.getProperty("security.overridePropertiesFile"))) {
String extraPropFile = System.getProperty("java.security.properties");
if (extraPropFile != null && extraPropFile.startsWith("=")) {
overrideAll = true;
extraPropFile = extraPropFile.substring(1);
}
if (overrideAll) {
props = new Properties();
if (sdebug != null) {
sdebug.println("overriding other security properties files!");
}
}
// now load the user-specified file so its values
// will win if they conflict with the earlier values
if (extraPropFile != null) {
try {
URL propURL;
extraPropFile = PropertyExpander.expand(extraPropFile);
propFile = new File(extraPropFile);
if (propFile.exists()) {
propURL = new URL("file:" + propFile.getCanonicalPath());
} else {
propURL = new URL(extraPropFile);
}
BufferedInputStream bis = new BufferedInputStream(propURL.openStream());
props.load(bis);
bis.close();
loadedProps = true;
if (sdebug != null) {
sdebug.println("reading security properties file: " + propURL);
if (overrideAll) {
sdebug.println("overriding other security properties files!");
}
}
} catch (Exception e) {
if (sdebug != null) {
sdebug.println("unable to load security properties from " + extraPropFile);
e.printStackTrace();
}
}
}
}
if (!loadedProps) {
initializeStatic();
if (sdebug != null) {
sdebug.println("unable to load security properties " + "-- using defaults");
}
}
}
/**
* コンストラクタ ここでファイルからデータを読み込んでいる
*
* @param in_gl OpenGLコマンド群をカプセル化したクラス
* @param in_texPool テクスチャ管理クラス
* @param i_provider ファイルデータプロバイダ
* @param mqoFile 読み込みファイル
* @param scale モデルの倍率
* @param isUseVBO 頂点配列バッファを使用するかどうか
*/
protected KGLMetaseq(
GL10 gl, KGLTextures in_texPool, AssetManager am, String msqname, float scale) {
super(in_texPool, am, scale);
// targetMQO = in_moq;
material mats[] = null;
InputStream fis = null;
// InputStreamReader isr = null ;
// BufferedReader br = null;
multiInput br = null;
String chankName[] = null;
GLObject glo = null;
ArrayList<GLObject> globjs = new ArrayList<GLObject>();
try {
fis = am.open(msqname);
// isr = new InputStreamReader(fis) ;
// br = new BufferedReader(isr);
br = new multiInput(fis);
while ((chankName = Chank(br, false)) != null) {
/*
* for( int i = 0 ; i < chankName.length ; i++ ) {
* System.out.print(chankName[i]+" ") ; } System.out.println() ;
*/
if (chankName[0].trim().toUpperCase().equals("MATERIAL")) {
try {
mats = new material[Integer.parseInt(chankName[1])];
for (int m = 0; m < mats.length; m++) {
mats[m] = new material();
mats[m].set(br.readLine().trim());
// Log.i("KGLMetaseq", "Material(" + m+") :" + mats[m].toString());
}
} catch (Exception mat_e) {
Log.e("KGLMetaseq", "MQOファイル Materialチャンク読み込み例外発生 " + mat_e.getMessage());
throw new KGLException(mat_e);
}
}
try {
if (chankName[0].trim().toUpperCase().equals("OBJECT")) {
objects object = new objects();
object.set(chankName[1], br, scale);
// System.out.println(object.toString()) ;
if (object.face == null) {
continue; // 面情報のないオブジェクトは飛ばす
}
glo = makeObjs(gl, mats, object);
if (glo != null) {
globjs.add(glo);
}
}
} catch (Exception obj_e) {
Log.e(
"KGLMetaseq", "MQOファイル Object[" + chankName[1] + "]チャンク読み込み例外発生 " + obj_e.toString());
throw new KGLException(obj_e);
}
}
br.close(); // 読み込み終了
br = null;
glObj = globjs.toArray(new GLObject[0]);
} catch (Exception e) {
e.printStackTrace();
} finally {
try {
if (br != null) br.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
synchronized Result formatSummary() {
Result result = new Result();
ProxyClient proxyClient = vmPanel.getProxyClient();
if (proxyClient.isDead()) {
return null;
}
buf = new StringBuilder();
append("<table cellpadding=1>");
try {
RuntimeMXBean rmBean = proxyClient.getRuntimeMXBean();
CompilationMXBean cmpMBean = proxyClient.getCompilationMXBean();
ThreadMXBean tmBean = proxyClient.getThreadMXBean();
MemoryMXBean memoryBean = proxyClient.getMemoryMXBean();
ClassLoadingMXBean clMBean = proxyClient.getClassLoadingMXBean();
OperatingSystemMXBean osMBean = proxyClient.getOperatingSystemMXBean();
com.sun.management.OperatingSystemMXBean sunOSMBean =
proxyClient.getSunOperatingSystemMXBean();
append("<tr><td colspan=4>");
append("<center><b>" + Messages.SUMMARY_TAB_TAB_NAME + "</b></center>");
String dateTime = headerDateTimeFormat.format(System.currentTimeMillis());
append("<center>" + dateTime + "</center>");
append(newDivider);
{ // VM info
append(newLeftTable);
append(Messages.CONNECTION_NAME, vmPanel.getDisplayName());
append(
Messages.VIRTUAL_MACHINE,
Resources.format(
Messages.SUMMARY_TAB_VM_VERSION, rmBean.getVmName(), rmBean.getVmVersion()));
append(Messages.VENDOR, rmBean.getVmVendor());
append(Messages.NAME, rmBean.getName());
append(endTable);
append(newRightTable);
result.upTime = rmBean.getUptime();
append(Messages.UPTIME, formatTime(result.upTime));
if (sunOSMBean != null) {
result.processCpuTime = sunOSMBean.getProcessCpuTime();
append(Messages.PROCESS_CPU_TIME, formatNanoTime(result.processCpuTime));
}
if (cmpMBean != null) {
append(Messages.JIT_COMPILER, cmpMBean.getName());
append(
Messages.TOTAL_COMPILE_TIME,
cmpMBean.isCompilationTimeMonitoringSupported()
? formatTime(cmpMBean.getTotalCompilationTime())
: Messages.UNAVAILABLE);
} else {
append(Messages.JIT_COMPILER, Messages.UNAVAILABLE);
}
append(endTable);
}
append(newDivider);
{ // Threads and Classes
append(newLeftTable);
int tlCount = tmBean.getThreadCount();
int tdCount = tmBean.getDaemonThreadCount();
int tpCount = tmBean.getPeakThreadCount();
long ttCount = tmBean.getTotalStartedThreadCount();
String[] strings1 =
formatLongs(
tlCount, tpCount,
tdCount, ttCount);
append(Messages.LIVE_THREADS, strings1[0]);
append(Messages.PEAK, strings1[1]);
append(Messages.DAEMON_THREADS, strings1[2]);
append(Messages.TOTAL_THREADS_STARTED, strings1[3]);
append(endTable);
append(newRightTable);
long clCount = clMBean.getLoadedClassCount();
long cuCount = clMBean.getUnloadedClassCount();
long ctCount = clMBean.getTotalLoadedClassCount();
String[] strings2 = formatLongs(clCount, cuCount, ctCount);
append(Messages.CURRENT_CLASSES_LOADED, strings2[0]);
append(Messages.TOTAL_CLASSES_LOADED, strings2[2]);
append(Messages.TOTAL_CLASSES_UNLOADED, strings2[1]);
append(null, "");
append(endTable);
}
append(newDivider);
{ // Memory
MemoryUsage u = memoryBean.getHeapMemoryUsage();
append(newLeftTable);
String[] strings1 = formatKByteStrings(u.getUsed(), u.getMax());
append(Messages.CURRENT_HEAP_SIZE, strings1[0]);
append(Messages.MAXIMUM_HEAP_SIZE, strings1[1]);
append(endTable);
append(newRightTable);
String[] strings2 = formatKByteStrings(u.getCommitted());
append(Messages.COMMITTED_MEMORY, strings2[0]);
append(
Messages.SUMMARY_TAB_PENDING_FINALIZATION_LABEL,
Messages.SUMMARY_TAB_PENDING_FINALIZATION_VALUE,
memoryBean.getObjectPendingFinalizationCount());
append(endTable);
append(newTable);
Collection<GarbageCollectorMXBean> garbageCollectors =
proxyClient.getGarbageCollectorMXBeans();
for (GarbageCollectorMXBean garbageCollectorMBean : garbageCollectors) {
String gcName = garbageCollectorMBean.getName();
long gcCount = garbageCollectorMBean.getCollectionCount();
long gcTime = garbageCollectorMBean.getCollectionTime();
append(
Messages.GARBAGE_COLLECTOR,
Resources.format(
Messages.GC_INFO,
gcName,
gcCount,
(gcTime >= 0) ? formatTime(gcTime) : Messages.UNAVAILABLE),
4);
}
append(endTable);
}
append(newDivider);
{ // Operating System info
append(newLeftTable);
String osName = osMBean.getName();
String osVersion = osMBean.getVersion();
String osArch = osMBean.getArch();
result.nCPUs = osMBean.getAvailableProcessors();
append(Messages.OPERATING_SYSTEM, osName + " " + osVersion);
append(Messages.ARCHITECTURE, osArch);
append(Messages.NUMBER_OF_PROCESSORS, result.nCPUs + "");
if (pathSeparator == null) {
// Must use separator of remote OS, not File.pathSeparator
// from this local VM. In the future, consider using
// RuntimeMXBean to get the remote system property.
pathSeparator = osName.startsWith("Windows ") ? ";" : ":";
}
if (sunOSMBean != null) {
String[] kbStrings1 = formatKByteStrings(sunOSMBean.getCommittedVirtualMemorySize());
String[] kbStrings2 =
formatKByteStrings(
sunOSMBean.getTotalPhysicalMemorySize(),
sunOSMBean.getFreePhysicalMemorySize(),
sunOSMBean.getTotalSwapSpaceSize(),
sunOSMBean.getFreeSwapSpaceSize());
append(Messages.COMMITTED_VIRTUAL_MEMORY, kbStrings1[0]);
append(endTable);
append(newRightTable);
append(Messages.TOTAL_PHYSICAL_MEMORY, kbStrings2[0]);
append(Messages.FREE_PHYSICAL_MEMORY, kbStrings2[1]);
append(Messages.TOTAL_SWAP_SPACE, kbStrings2[2]);
append(Messages.FREE_SWAP_SPACE, kbStrings2[3]);
}
append(endTable);
}
append(newDivider);
{ // VM arguments and paths
append(newTable);
String args = "";
java.util.List<String> inputArguments = rmBean.getInputArguments();
for (String arg : inputArguments) {
args += arg + " ";
}
append(Messages.VM_ARGUMENTS, args, 4);
append(Messages.CLASS_PATH, rmBean.getClassPath(), 4);
append(Messages.LIBRARY_PATH, rmBean.getLibraryPath(), 4);
append(
Messages.BOOT_CLASS_PATH,
rmBean.isBootClassPathSupported() ? rmBean.getBootClassPath() : Messages.UNAVAILABLE,
4);
append(endTable);
}
} catch (IOException e) {
if (JConsole.isDebug()) {
e.printStackTrace();
}
proxyClient.markAsDead();
return null;
} catch (UndeclaredThrowableException e) {
if (JConsole.isDebug()) {
e.printStackTrace();
}
proxyClient.markAsDead();
return null;
}
append("</table>");
result.timeStamp = System.currentTimeMillis();
result.summary = buf.toString();
return result;
}
// Thread's run method aimed at creating a bitmap asynchronously
public void run() {
Drawing drawing = new Drawing();
PicText rawPicText = new PicText();
String s = ((PicText) element).getText();
rawPicText.setText(s);
drawing.add(
rawPicText); // bug fix: we must add a CLONE of the PicText, otherwise it loses it former
// parent... (then pb with the view )
drawing.setNotparsedCommands(
"\\newlength{\\jpicwidth}\\settowidth{\\jpicwidth}{"
+ s
+ "}"
+ CR_LF
+ "\\newlength{\\jpicheight}\\settoheight{\\jpicheight}{"
+ s
+ "}"
+ CR_LF
+ "\\newlength{\\jpicdepth}\\settodepth{\\jpicdepth}{"
+ s
+ "}"
+ CR_LF
+ "\\typeout{JPICEDT INFO: \\the\\jpicwidth, \\the\\jpicheight, \\the\\jpicdepth }"
+ CR_LF);
RunExternalCommand.Command commandToRun = RunExternalCommand.Command.BITMAP_CREATION;
// RunExternalCommand command = new RunExternalCommand(drawing, contentType,commandToRun);
boolean isWriteTmpTeXfile = true;
String bitmapExt = "png"; // [pending] preferences
String cmdLine =
"{i}/unix/tetex/create_bitmap.sh {p} {f} "
+ bitmapExt
+ " "
+ fileDPI; // [pending] preferences
ContentType contentType = getContainer().getContentType();
RunExternalCommand.isGUI = false; // System.out, no dialog box // [pending] debug
RunExternalCommand command =
new RunExternalCommand(drawing, contentType, cmdLine, isWriteTmpTeXfile);
command
.run(); // synchronous in an async. thread => it's ok (anyway, we must way until the LaTeX
// process has completed)
if (wantToComputeLatexDimensions) {
// load size of text:
try {
File logFile = new File(command.getTmpPath(), command.getTmpFilePrefix() + ".log");
BufferedReader reader = null;
try {
reader = new BufferedReader(new FileReader(logFile));
} catch (FileNotFoundException fnfe) {
System.out.println("Cannot find log file! " + fnfe.getMessage());
System.out.println(logFile);
} catch (IOException ioex) {
System.out.println("Log file IO exception");
ioex.printStackTrace();
} // utile ?
System.out.println("Log file created! file=" + logFile);
getDimensionsFromLogFile(reader, (PicText) element);
syncStringLocation(); // update dimensions
syncBounds();
syncFrame();
SwingUtilities.invokeLater(
new Thread() {
public void run() {
repaint(null);
}
});
// repaint(null); // now that dimensions are available, we force a repaint() [pending]
// smart-repaint ?
} catch (Exception e) {
e.printStackTrace();
}
}
if (wantToGetBitMap) {
// load image:
try {
File bitmapFile =
new File(command.getTmpPath(), command.getTmpFilePrefix() + "." + bitmapExt);
this.image = ImageIO.read(bitmapFile);
System.out.println(
"Bitmap created! file="
+ bitmapFile
+ ", width="
+ image.getWidth()
+ "pixels, height="
+ image.getHeight()
+ "pixels");
if (image == null) return;
syncStringLocation(); // sets strx, stry, and dimensions of text
syncBounds();
// update the AffineTransform that will be applied to the bitmap before displaying on screen
PicText te = (PicText) element;
text2ModelTr.setToIdentity(); // reset
PicPoint anchor = te.getCtrlPt(TextEditable.P_ANCHOR, ptBuf);
text2ModelTr.rotate(getRotation(), anchor.x, anchor.y); // rotate along P_ANCHOR !
text2ModelTr.translate(te.getLeftX(), te.getTopY());
text2ModelTr.scale(
te.getWidth() / image.getWidth(),
-(te.getHeight() + te.getDepth()) / image.getHeight());
// [pending] should do something special to avoid dividing by 0 or setting a rescaling
// factor to 0 [non invertible matrix] (java will throw an exception)
syncFrame();
SwingUtilities.invokeLater(
new Thread() {
public void run() {
repaint(null);
}
});
// repaint(null); // now that bitmap is available, we force a repaint() [pending]
// smart-repaint ?
} catch (Exception e) {
e.printStackTrace();
}
}
}
/**
* Try to determine whether this application is running under Windows or some other platform by
* examining the "os.name" property.
*/
static {
String os = System.getProperty("os.name");
// String version = System.getProperty("os.version"); // for Win7, reports "6.0" on JDK7, should
// be "6.1"; for Win8, reports "6.2" as of JDK7u17
if (SystemUtils.startsWithIgnoreCase(os, "windows 7"))
isWin7 = true; // reports "Windows Vista" on JDK7
else if (SystemUtils.startsWithIgnoreCase(os, "windows 8"))
isWin7 = true; // reports "Windows 8" as of JDK7u17
else if (SystemUtils.startsWithIgnoreCase(os, "windows vista")) isVista = true;
else if (SystemUtils.startsWithIgnoreCase(os, "windows xp")) isWinXP = true;
else if (SystemUtils.startsWithIgnoreCase(os, "windows 2000")) isWin2k = true;
else if (SystemUtils.startsWithIgnoreCase(os, "windows nt")) isWinNT = true;
else if (SystemUtils.startsWithIgnoreCase(os, "windows"))
isWin9X = true; // win95 or win98 (what about WinME?)
else if (SystemUtils.startsWithIgnoreCase(os, "mac")) isMac = true;
else if (SystemUtils.startsWithIgnoreCase(os, "so")) isSolaris = true; // sunos or solaris
else if (os.equalsIgnoreCase("linux")) isLinux = true;
else isUnix = true; // assume UNIX, e.g. AIX, HP-UX, IRIX
String osarch = System.getProperty("os.arch");
String arch = (osarch != null && osarch.contains("64")) ? "_x64" /* eg. 'amd64' */ : "_x32";
String syslib = SYSLIB + arch;
try { // loading a native lib in a static initializer ensures that it is available before any
// method in this class is called:
System.loadLibrary(syslib);
System.out.println(
"Done loading '" + System.mapLibraryName(syslib) + "', PID=" + getProcessID());
} catch (Error e) {
System.err.println(
"Native library '"
+ System.mapLibraryName(syslib)
+ "' not found in 'java.library.path': "
+ System.getProperty("java.library.path"));
throw e; // re-throw
}
if (isWinPlatform()) {
System.setProperty(
"line.separator", "\n"); // so we won't have to mess with DOS line endings ever again
comSpec =
getEnv(
"comSpec"); // use native method here since getEnvironmentVariable() needs to know
// comSpec
comSpec = (comSpec != null) ? comSpec + " /c " : "";
try (BufferedReader br =
new BufferedReader(
new InputStreamReader(
RUNTIME.exec(comSpec + "ver").getInputStream()))) { // fix for Win7,8
for (String line = null; (line = br.readLine()) != null; ) {
if (isVista && (line.contains("6.1" /*Win7*/) || line.contains("6.2" /*Win8*/))) {
isVista = false;
isWin7 = true;
}
}
} catch (IOException e) {
e.printStackTrace();
}
String cygdir = getEnv("cygdir"); // this is set during CygWin install to "?:/cygwin/bin"
isCygWin = (cygdir != null && !cygdir.equals("%cygdir%"));
cygstartPath = cygdir + "/cygstart.exe"; // path to CygWin's cygutils' "cygstart" binary
if (getDebug() && Desktop.isDesktopSupported()) {
Desktop desktop = Desktop.getDesktop();
for (Desktop.Action action : Desktop.Action.values())
System.out.println(
"Desktop action " + action + " supported? " + desktop.isSupported(action));
}
}
}
/**
* A static convience method for decoding an object from the given file.
*
* <p>All exceptions are logged using LogMgr internally and then rethrown as GlueException with
* the same message as written to the log.
*
* @param title The name to be given to the object when decoded.
* @param file The Glue format file to be decoded.
* @throws GlueException If unable to decode the string.
*/
public static Object decodeFile(String title, File file) throws GlueException {
LogMgr.getInstance()
.log(LogMgr.Kind.Glu, LogMgr.Level.Finest, "Reading " + title + ": " + file);
try {
InputStream in = null;
try {
in = new BufferedInputStream(new FileInputStream(file));
} catch (IOException ex) {
String msg =
("I/O ERROR: \n"
+ " Unable to open file ("
+ file
+ ") to decode: "
+ title
+ "\n"
+ " "
+ ex.getMessage());
LogMgr.getInstance().log(LogMgr.Kind.Glu, LogMgr.Level.Severe, msg);
throw new GlueException(msg);
}
try {
GlueDecoderImpl gd = new GlueDecoderImpl();
GlueParser parser = new GlueParser(in, "UTF-8");
return parser.Decode(gd, gd.getState());
} catch (ParseException ex) {
throw new GlueException(ex);
} catch (TokenMgrError ex) {
throw new GlueException(ex);
} finally {
in.close();
}
} catch (IOException ex) {
String msg =
("I/O ERROR: \n"
+ " While reading from file ("
+ file
+ ") during Glue decoding of: "
+ title
+ "\n"
+ " "
+ ex.getMessage());
LogMgr.getInstance().log(LogMgr.Kind.Glu, LogMgr.Level.Severe, msg);
throw new GlueException(msg);
} catch (GlueException ex) {
String msg =
("While reading from file ("
+ file
+ "), unable to Glue decode: "
+ title
+ "\n"
+ " "
+ ex.getMessage());
LogMgr.getInstance().log(LogMgr.Kind.Glu, LogMgr.Level.Severe, msg);
throw new GlueException(msg);
} catch (Exception ex) {
String msg = Exceptions.getFullMessage("INTERNAL ERROR:", ex, true, true);
LogMgr.getInstance().log(LogMgr.Kind.Glu, LogMgr.Level.Severe, msg);
throw new GlueException(msg);
}
}
/** Submits POST command to the server, and reads the reply. */
public boolean post(
String url,
String fileName,
String cryptToken,
String type,
String path,
String content,
String comment)
throws IOException {
String sep = "89692781418184";
while (content.indexOf(sep) != -1) sep += "x";
String message = makeMimeForm(fileName, cryptToken, type, path, content, comment, sep);
// for test
// URL server = new URL("http", "localhost", 80, savePath);
URL server =
new URL(getCodeBase().getProtocol(), getCodeBase().getHost(), getCodeBase().getPort(), url);
URLConnection connection = server.openConnection();
connection.setAllowUserInteraction(false);
connection.setDoOutput(true);
// connection.setDoInput(true);
connection.setUseCaches(false);
connection.setRequestProperty("Content-type", "multipart/form-data; boundary=" + sep);
connection.setRequestProperty("Content-length", Integer.toString(message.length()));
// System.out.println(url);
String replyString = null;
try {
DataOutputStream out = new DataOutputStream(connection.getOutputStream());
out.writeBytes(message);
out.close();
// System.out.println("Wrote " + message.length() +
// " bytes to\n" + connection);
try {
BufferedReader in = new BufferedReader(new InputStreamReader(connection.getInputStream()));
String reply = null;
while ((reply = in.readLine()) != null) {
if (reply.startsWith("ERROR ")) {
replyString = reply.substring("ERROR ".length());
}
}
in.close();
} catch (IOException ioe) {
replyString = ioe.toString();
}
} catch (UnknownServiceException use) {
replyString = use.getMessage();
System.out.println(message);
}
if (replyString != null) {
// System.out.println("---- Reply " + replyString);
if (replyString.startsWith("URL ")) {
URL eurl = getURL(replyString.substring("URL ".length()));
getAppletContext().showDocument(eurl);
} else if (replyString.startsWith("java.io.FileNotFoundException")) {
// debug; when run from appletviewer, the http connection
// is not available so write the file content
if (path.endsWith(".draw") || path.endsWith(".map")) System.out.println(content);
} else showStatus(replyString);
return false;
} else {
showStatus(url + " saved");
return true;
}
}
/**
* Given class of the interface for a fluid engine, build a concrete instance of that interface
* that calls back into a Basic Engine for all methods in the interface.
*/
private static BasicEngine buildCallbackEngine(String engineInterface, Class cEngine) {
// build up list of callbacks for <engineInterface>
StringBuffer decls = new StringBuffer();
Method[] engineMethods = cEngine.getMethods();
for (int i = 0; i < engineMethods.length; i++) {
Method meth = engineMethods[i];
// skip methods that aren't declared in the interface
if (meth.getDeclaringClass() != cEngine) {
continue;
}
decls.append(
" public " + Utils.asTypeDecl(meth.getReturnType()) + " " + meth.getName() + "(");
Class[] params = meth.getParameterTypes();
for (int j = 0; j < params.length; j++) {
decls.append(Utils.asTypeDecl(params[j]) + " p" + j);
if (j != params.length - 1) {
decls.append(", ");
}
}
decls.append(") {\n");
decls.append(
" return ("
+ Utils.asTypeDecl(meth.getReturnType())
+ ")super.callNative(\""
+ meth.getName()
+ "\", new Object[] {");
for (int j = 0; j < params.length; j++) {
decls.append("p" + j);
if (j != params.length - 1) {
decls.append(", ");
}
}
decls.append("} );\n");
decls.append(" }\n\n");
}
// write template file
String engineName = "BasicEngine_" + engineInterface;
String fileName = engineName + ".java";
try {
String contents = Utils.readFile("lava/engine/basic/BasicEngineTemplate.java").toString();
// remove package name
contents = Utils.replaceAll(contents, "package lava.engine.basic;", "");
// for class decl
contents =
Utils.replaceAll(
contents, "extends BasicEngine", "extends BasicEngine implements " + engineInterface);
// for constructor
contents = Utils.replaceAll(contents, "BasicEngineTemplate", engineName);
// for methods
contents = Utils.replaceAll(contents, "// INSERT METHODS HERE", decls.toString());
Utils.writeFile(fileName, contents);
} catch (IOException e) {
e.printStackTrace();
System.exit(1);
}
// compile the file
try {
Process jProcess = Runtime.getRuntime().exec("jikes " + fileName, null, null);
jProcess.waitFor();
} catch (Exception e) {
System.err.println("Error compiling auto-generated file " + fileName);
e.printStackTrace();
System.exit(1);
}
// instantiate the class
BasicEngine result = null;
try {
result = (BasicEngine) Class.forName(engineName).newInstance();
// cleanup the files we made
new File(engineName + ".java").delete();
new File(engineName + ".class").delete();
} catch (Exception e) {
e.printStackTrace();
System.exit(1);
}
return result;
}
private CIJobStatus configureJob(CIJob job, String jobType) throws PhrescoException {
if (debugEnabled) {
S_LOGGER.debug("Entering Method CIManagerImpl.createJob(CIJob job)");
}
try {
cli = getCLI(job);
List<String> argList = new ArrayList<String>();
argList.add(jobType);
argList.add(job.getName());
String jenkinsTemplateDir = Utility.getJenkinsTemplateDir();
String configFilePath = jenkinsTemplateDir + job.getRepoType() + HYPHEN + CONFIG_XML;
if (debugEnabled) {
S_LOGGER.debug("configFilePath ... " + configFilePath);
}
File configFile = new File(configFilePath);
ConfigProcessor processor = new ConfigProcessor(configFile);
customizeNodes(processor, job);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
if (debugEnabled) {
S_LOGGER.debug("argList " + argList.toString());
}
int result = cli.execute(argList, processor.getConfigAsStream(), System.out, baos);
String message = "Job created successfully";
if (result == -1) {
byte[] byteArray = baos.toByteArray();
message = new String(byteArray);
}
if (debugEnabled) {
S_LOGGER.debug("message " + message);
}
// when svn is selected credential value has to set
if (SVN.equals(job.getRepoType())) {
setSvnCredential(job);
}
setMailCredential(job);
return new CIJobStatus(result, message);
} catch (IOException e) {
throw new PhrescoException(e);
} catch (JDOMException e) {
throw new PhrescoException(e);
} finally {
if (cli != null) {
try {
cli.close();
} catch (IOException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
} catch (InterruptedException e) {
if (debugEnabled) {
S_LOGGER.error(e.getLocalizedMessage());
}
}
}
}
}