/** @param args */
public static void main(String[] args) throws Exception {
File file = new File("input.txt");
if (file.exists()) {
System.setIn(new BufferedInputStream(new FileInputStream("input.txt")));
}
out = System.out;
bw = new BufferedWriter(new PrintWriter(out));
// sc = new Scanner(System.in);
br = new BufferedReader(new InputStreamReader(System.in));
C231 t = new C231();
t.solve();
bw.close();
}
@Override
public boolean accept(File file) {
if (file.isDirectory()) {
return true;
}
String name = file.getName().toLowerCase();
for (int i = 0; i < extensions.length; ++i) {
if (name.endsWith(extensions[i])) {
return true;
}
}
return false;
}
public void saveAs() {
Vector<RopeFileFilter> filters = new Vector<RopeFileFilter>();
if (fileExt.equals("m") || fileExt.equals("mac")) {
filters.add(new RopeFileFilter(new String[] {".m", ".mac"}, "Macro files (*.m *.mac)"));
filters.add(
new RopeFileFilter(
new String[] {".a", ".asm", ".aut", ".s"}, "Assembly files (*.a *.asm *.aut *.s)"));
} else {
filters.add(
new RopeFileFilter(
new String[] {".a", ".asm", ".aut", ".s"}, "Assembly files (*.a *.asm *.aut *.s)"));
filters.add(new RopeFileFilter(new String[] {".m", ".mac"}, "Macro files (*.m *.mac)"));
}
filters.add(new RopeFileFilter(new String[] {".txt"}, "Text files (*.txt)"));
RopeFileChooser chooser = new RopeFileChooser(selectedPath, null, filters);
chooser.setDialogTitle("Save Source File");
String fileName = String.format("%s.%s", baseName, fileExt);
chooser.setSelectedFile(new File(selectedPath, fileName));
JTextField field = chooser.getTextField();
field.setSelectionStart(0);
field.setSelectionEnd(baseName.length());
File file = chooser.save(ROPE.mainFrame);
if (file != null) {
selectedPath = file.getParent();
BufferedWriter writer = null;
try {
writer = new BufferedWriter(new FileWriter(file));
writer.write(sourceArea.getText());
} catch (IOException ex) {
ex.printStackTrace();
} finally {
try {
if (writer != null) {
writer.close();
}
} catch (IOException ex) {
ex.printStackTrace();
}
}
}
}
public static void main(String[] args) {
double[] sigma = {3E-4, 1E-6, 2.4E-2, 6.67E-5, 1E-6, 6E-3, 4.4E-4, 1E-2, 1E-6};
double[] mu = {0.42E9, 2.27};
double alpha = 0.0;
Sampler sampler = new Sampler(mu, sigma, alpha);
double[][] M = sampler.getCovMat();
System.out.println("The Covirance Matrix is:");
sampler.printMatrix(M);
double[][] A = sampler.getCholDecompA();
System.out.println("The decomposed Matrix A is");
sampler.printMatrix(A);
try {
File file = new File("/Users/Weizheng/Documents/JavaWorkPlace/CLS_MCIntegrator/output.txt");
// if file doesnt exists, then create it
if (!file.exists()) {
file.createNewFile();
} else {
file.delete();
file.createNewFile();
}
PrintWriter fw = new PrintWriter(file);
long startTime = System.currentTimeMillis();
for (int i = 0; i < 1E3; i++) {
double[] MultiNormalVector = sampler.nextMultiNormalVector();
// for(double a:MultiNormalVector ){
// fw.printf("%4.2e ", a);
// }
// fw.println("");
}
fw.close();
long endTime = System.currentTimeMillis();
System.out.println("That took " + (endTime - startTime) + " milliseconds");
} catch (IOException e) {
e.printStackTrace();
}
}
private void browseAction() {
if (selectedPath == null) {
selectedPath = System.getenv("ROPE_SOURCES_DIR");
if (selectedPath != null) {
File dir = new File(selectedPath);
if (!dir.exists() || !dir.isDirectory()) {
String message =
String.format(
"The sources path set in environment variable ROPE_SOURCES_DIR is not avaliable.\n%s",
selectedPath);
JOptionPane.showMessageDialog(null, message, "ROPE", JOptionPane.WARNING_MESSAGE);
selectedPath = null;
} else {
System.out.println("Source folder path set from ROPE_SOURCES_DIR: " + selectedPath);
}
}
if (selectedPath == null) {
selectedPath = System.getProperty("user.dir");
System.out.println("Source folder path set to current directory: " + selectedPath);
}
}
Vector<RopeFileFilter> filters = new Vector<RopeFileFilter>();
filters.add(
new RopeFileFilter(
new String[] {".a", ".asm", ".aut", ".s"}, "Assembly files (*.a *.asm *.aut *.s)"));
filters.add(new RopeFileFilter(new String[] {".m", ".mac"}, "Macro files (*.m *.mac)"));
filters.add(new RopeFileFilter(new String[] {".lst"}, "List files (*.lst)"));
filters.add(new RopeFileFilter(new String[] {".txt"}, "Text files (*.txt)"));
RopeFileChooser chooser = new RopeFileChooser(selectedPath, null, filters);
chooser.setDialogTitle("Source document selection");
chooser.setFileFilter(filters.firstElement());
chooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
File file = chooser.open(this, fileText);
if (file != null) {
if (loadSourceFile(file)) {
mainFrame.showExecWindow(baseName);
}
}
}
/** @param args */
public static void main(String[] args) throws Exception {
File file = new File("B-small-practice.in");
if (file.exists()) {
System.setIn(new BufferedInputStream(new FileInputStream(file)));
}
sc = new Scanner(System.in);
FileWriter fw = new FileWriter(new File("output.txt"));
out = new PrintWriter(fw);
Bsmall b = new Bsmall();
int T = sc.nextInt();
int t = 1;
while (t <= T) {
out.print("Case #" + t + ": ");
b.solve();
t++;
}
out.close();
fw.close();
}
/** @param args */
public static void main(String[] args) throws Exception {
out = System.out;
File file = new File("input.txt");
if (file.exists()) {
System.setIn(new BufferedInputStream(new FileInputStream("input.txt")));
}
sc = new Scanner(System.in);
POJ3109 p = new POJ3109();
while (true) {
try {
N = sc.nextInt();
if (N == 0) {
break;
}
} catch (Exception ex) {
break;
}
p.solve();
}
}
public boolean loadSourceFile(File file) {
boolean result = false;
selectedPath = file.getParent();
BufferedReader sourceFile = null;
String directoryPath = file.getParent();
String sourceName = file.getName();
int idx = sourceName.lastIndexOf(".");
fileExt = idx == -1 ? "" : sourceName.substring(idx + 1);
baseName = idx == -1 ? sourceName.substring(0) : sourceName.substring(0, idx);
String basePath = directoryPath + File.separator + baseName;
DataOptions.directoryPath = directoryPath;
sourcePath = file.getPath();
AssemblerOptions.sourcePath = sourcePath;
AssemblerOptions.listingPath = basePath + ".lst";
AssemblerOptions.objectPath = basePath + ".cd";
String var = System.getenv("ROPE_MACROS_DIR");
if (var != null && !var.isEmpty()) {
File dir = new File(var);
if (dir.exists() && dir.isDirectory()) {
AssemblerOptions.macroPath = var;
} else {
AssemblerOptions.macroPath = directoryPath;
}
} else {
AssemblerOptions.macroPath = directoryPath;
}
DataOptions.inputPath = AssemblerOptions.objectPath;
DataOptions.outputPath = basePath + ".out";
DataOptions.readerPath = null;
DataOptions.punchPath = basePath + ".pch";
DataOptions.tape1Path = basePath + ".mt1";
DataOptions.tape2Path = basePath + ".mt2";
DataOptions.tape3Path = basePath + ".mt3";
DataOptions.tape4Path = basePath + ".mt4";
DataOptions.tape5Path = basePath + ".mt5";
DataOptions.tape6Path = basePath + ".mt6";
this.setTitle("EDIT: " + sourceName);
fileText.setText(sourcePath);
if (dialog == null) {
dialog = new AssemblerDialog(mainFrame, "Assembler options");
Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
Dimension dialogSize = dialog.getSize();
dialog.setLocation(
(screenSize.width - dialogSize.width) / 2, (screenSize.height - dialogSize.height) / 2);
}
dialog.initialize();
AssemblerOptions.command = dialog.buildCommand();
sourceArea.setText(null);
try {
sourceFile = new BufferedReader(new FileReader(file));
String line;
while ((line = sourceFile.readLine()) != null) {
sourceArea.append(line + "\n");
}
sourceArea.setCaretPosition(0);
optionsButton.setEnabled(true);
assembleButton.setEnabled(true);
saveButton.setEnabled(true);
setSourceChanged(false);
undoMgr.discardAllEdits();
result = true;
} catch (IOException ex) {
ex.printStackTrace();
} finally {
try {
if (sourceFile != null) {
sourceFile.close();
}
} catch (IOException ignore) {
}
}
return result;
}
public void nextTimeStep() {
births = 0;
deaths = 0;
// for (int i=0;i<o2perTS;i++) iterateOxygen(); // oh dear
iterateCells();
radiotherapy = false;
stem_cells_this_TS = 0; // counter to track population dynamics
non_stem_cells_this_TS = 0; // counter to track population dynamics
// NEW
int totalCells = 0;
int totalHealthy = 0;
int totalStem = 0;
int totalProgenitor = 0;
int totalMature = 0;
for (int i = 0; i < size; i++)
for (int j = 0; j < size; j++)
if (Cells[i][j] < 4) {
totalCells++;
if (Cells[i][j] == 0) totalHealthy++;
else if (Cells[i][j] == 1) totalStem++;
else if (Cells[i][j] == 2) totalProgenitor++;
else if (Cells[i][j] == 3) totalMature++;
else System.err.println("wrong cell type");
}
// Not so new
if (timestep == 0)
System.out.println(
+size
+ ", "
+ mutfreq
+ ", "
+ lengthGenome
+ ", "
+ asymmetricRatio); // print (parent,child) pair
// System.out.println ("% Timestep\t Cells\t Stem Cells \t Progenitor\t Mature");
if (timestep % dataReportStep == 0) {
// System.out.println(timestep+"\t"+totalCells+"\t"+totalStem+"\t"+totalProgenitor+"\t"+totalMature+"\t"+births+"\t"+deaths+"\t"+((float)births/deaths));
// System.err.println(asymmetricRatio+" "+maxProDivisions+" "+totalCells+" "+totalStem);}
// System.err.println(mutationNum+" "+totalStem);
}
timestep++;
// Finally let's write down the data
if ((timestep % dataWriteStep == 0) && (timestep > dataWriteStartTime)) {
try {
File dir = new File("./text");
dir.mkdir();
// cell matrix
FileWriter outFile1 = new FileWriter("./text/cells" + timestep);
PrintWriter outCells = new PrintWriter(outFile1);
// attempt at hashtable
// FileWriter outFileHm = new FileWriter("./text/pairs"+timestep); // new
// PrintWriter outTable = new PrintWriter(outFileHm); // new
// carriedGenome
// FileWriter outFilecG = new FileWriter("./text/genomes"+timestep); // new
// PrintWriter outcG = new PrintWriter(outFilecG); // new
// attempt at hashtable
// FileWriter outFileHm2 = new FileWriter("./text/timepairs"+timestep); // new
// PrintWriter outTable2 = new PrintWriter(outFileHm2); // new
// oxygen matrix
// FileWriter outFile2 = new FileWriter("./text/oxygen"+timestep);
// PrintWriter outO2 = new PrintWriter(outFile2);
// stem age matrix
// FileWriter outFile3 = new FileWriter("./text/stemBirthCounter"+timestep);
// PrintWriter outSBC = new PrintWriter(outFile3);
// carried mutation matrix
FileWriter outFile2 = new FileWriter("./text/carriedmutation" + timestep);
PrintWriter outCM = new PrintWriter(outFile2);
/*
// stem total birth matrix
//FileWriter outFile4 = new FileWriter("./text/stemBirthsTotal"+timestep);
//PrintWriter outSBM = new PrintWriter(outFile4);
// stem death matrix
//FileWriter outFile5 = new FileWriter("./text/stemDeathCounter"+timestep);
//PrintWriter outSD = new PrintWriter(outFile5);
// TAC birth matrix
//FileWriter outFile6 = new FileWriter("./text/TACBirthCounter"+timestep);
//PrintWriter outTB = new PrintWriter(outFile6);
// TAC death matrix
//FileWriter outFile7 = new FileWriter("./text/TACDeathCounter"+timestep);
//PrintWriter outTD = new PrintWriter(outFile7);
//write hashtable
for (Integer key : tree.keySet()) {
outTable.print(+key+", "+tree.get(key)+"\r\n");
} //new
outTable.println(""); //new
outTable.close(); //new
//write hashtable
for (Integer value : tree.valueSet()) {
outTableNew.print(+tree.get(value)+", "+value+"\r\n");
} //new
outTableNew.println(""); //new
outTableNew.close(); //new
//write hashtable
for (Integer key : timeTree.keySet()) {
outTable2.print(+key+", "+timeTree.get(key)+"\r\n");
} //new
outTable2.println(""); //new
outTable2.close(); //new
*/
for (int i = 0; i < size; i++) {
for (int j = 0; j < size; j++) {
outCells.print(Cells[i][j] + ", ");
// outcG.print(carriedGenome[i][j]+", ");
// outO2.print(Oxygen[i][j]+", ");
// outSBC.print(stemBirthCounter[i][j]+", ");
outCM.print(carriedmutation[i][j] + ", ");
// outSBM.print(stemBirthsTotal[i][j]+", ");
// outSD.print(stemDeathCounter[i][j]+", ");
// outTB.print(TACBirthCounter[i][j]+", ");
// outTD.print(TACDeathCounter[i][j]+", ");
}
outCells.println("");
// outcG.println("");
outCM.println("");
// outO2.println("");
// outSBC.println("");
// outSBM.println("");
// outSD.println("");
// outTB.println("");
// outTD.println("");
}
outCells.close();
// outcG.close();
outCM.close();
// outO2.close();
// outSBC.close();
// outSBM.close();
// outSD.close();
// outTB.close();
// outTD.close();
} catch (IOException e) {
e.printStackTrace();
System.exit(-1);
}
}
}
