Example #1
0
  /** Read an Entry from the given EntrySource and make a new EntryEdit component for the Entry. */
  private void getEntryEditFromEntrySource(final EntrySource entry_source) {
    SwingWorker entryWorker =
        new SwingWorker() {
          EntryEdit entry_edit;

          public Object construct() {
            try {
              final Entry entry = entry_source.getEntry(true);
              if (entry == null) return null;

              final EntryGroup entry_group = new SimpleEntryGroup(entry.getBases());

              entry_group.add(entry);
              entry_edit = new EntryEdit(entry_group);
            } catch (OutOfRangeException e) {
              new MessageDialog(
                  ArtemisMain.this,
                  "read failed: one of the features in "
                      + " the entry has an out of range "
                      + "location: "
                      + e.getMessage());
            } catch (NoSequenceException e) {
              new MessageDialog(ArtemisMain.this, "read failed: entry contains no sequence");
            } catch (IOException e) {
              new MessageDialog(ArtemisMain.this, "read failed due to IO error: " + e);
            }
            return null;
          }

          public void finished() {
            if (entry_edit != null) entry_edit.setVisible(true);
          }
        };
    entryWorker.start();
  }
Example #2
0
  /** Launch database manager window */
  private void launchDatabaseJFrame() {
    SwingWorker entryWorker =
        new SwingWorker() {
          public Object construct() {
            getStatusLabel().setText("Connecting ...");
            DatabaseEntrySource entry_source = new DatabaseEntrySource();
            boolean promptUser = true;
            if (System.getProperty("read_only") != null) promptUser = false;

            if (!entry_source.setLocation(promptUser)) return null;

            JFrame frame = new JFrame("Organism List");
            final DatabaseJPanel pane = new DatabaseJPanel(entry_source, ArtemisMain.this);
            frame.getContentPane().add(pane);
            frame.pack();
            Utilities.rightJustifyFrame(frame);
            frame.setVisible(true);
            // frame.setJMenuBar(pane.makeMenuBar(entry_source, ArtemisMain.this));
            getStatusLabel().setText("");
            return null;
          }
        };
    entryWorker.start();
  }